Wall clock time and date at job start Tue Mar 31 2020 06:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47281 * 2 1 4 4 N 1.46499 * 109.47527 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00325 * 179.72591 * 4 3 2 6 6 O 1.21280 * 119.99892 * 0.27736 * 5 4 3 7 7 C 1.50703 * 120.00110 * 180.27451 * 5 4 3 8 8 H 1.08997 * 109.50467 * 299.92452 * 7 5 4 9 9 C 1.53117 * 109.50119 * 60.00280 * 7 5 4 10 10 C 1.53118 * 109.16211 * 177.59612 * 9 7 5 11 11 C 1.53035 * 109.27421 * 302.34473 * 10 9 7 12 12 N 1.46847 * 109.52460 * 59.18011 * 11 10 9 13 13 C 1.46899 * 110.99653 * 174.16075 * 12 11 10 14 14 H 1.08998 * 109.47558 * 310.82316 * 13 12 11 15 15 C 1.52998 * 109.47546 * 70.82598 * 13 12 11 16 16 C 1.53005 * 109.46536 * 190.82752 * 13 12 11 17 17 C 1.50698 * 109.47408 * 62.55524 * 16 13 12 18 18 H 1.08003 * 119.99806 * 5.26505 * 17 16 13 19 19 C 1.37879 * 119.99983 * 185.26138 * 17 16 13 20 20 N 1.31509 * 119.99954 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99827 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47277 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47046 * 119.99890 * 21 19 17 24 24 H 1.48499 * 109.47084 * 240.00369 * 21 19 17 25 25 C 1.46841 * 111.19513 * 298.25399 * 12 11 10 26 26 H 1.08996 * 109.47340 * 300.00041 * 1 2 3 27 27 H 1.08996 * 109.46784 * 60.00085 * 1 2 3 28 28 H 1.08999 * 109.47120 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47112 * 240.00300 * 2 1 3 30 30 H 1.09000 * 109.46932 * 120.00405 * 2 1 3 31 31 H 1.09003 * 109.46802 * 60.00110 * 3 2 1 32 32 H 1.09000 * 109.47469 * 300.00077 * 3 2 1 33 33 H 0.96999 * 119.99622 * 0.02562 * 4 3 2 34 34 H 1.09009 * 109.52458 * 297.50187 * 9 7 5 35 35 H 1.09005 * 109.52615 * 57.62024 * 9 7 5 36 36 H 1.08995 * 109.50287 * 62.28625 * 10 9 7 37 37 H 1.09004 * 109.50244 * 182.36429 * 10 9 7 38 38 H 1.09000 * 109.45993 * 179.19580 * 11 10 9 39 39 H 1.08999 * 109.46324 * 299.15998 * 11 10 9 40 40 H 1.09002 * 109.46689 * 60.00049 * 15 13 12 41 41 H 1.09000 * 109.47289 * 179.97438 * 15 13 12 42 42 H 1.08995 * 109.47327 * 299.99812 * 15 13 12 43 43 H 1.09002 * 109.46946 * 182.55513 * 16 13 12 44 44 H 1.08997 * 109.46975 * 302.55092 * 16 13 12 45 45 H 0.96999 * 120.00259 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.46935 * 301.72587 * 25 12 11 47 47 H 1.09000 * 109.46343 * 181.75903 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 -0.0049 6 8 3.5725 3.6600 -0.0052 7 6 5.6859 2.6096 -0.0105 8 1 6.0531 2.0994 0.8799 9 6 6.1924 1.8849 -1.2605 10 6 7.7223 1.9416 -1.2892 11 6 8.1741 3.4035 -1.2626 12 7 7.6650 4.0526 -0.0477 13 6 8.1935 5.4171 0.0810 14 1 9.2743 5.4030 -0.0592 15 6 7.5533 6.3143 -0.9802 16 6 7.8670 5.9612 1.4733 17 6 8.5492 5.1141 2.5163 18 1 9.2226 4.3252 2.2154 19 6 8.3139 5.3464 3.8549 20 7 7.4936 6.3068 4.2213 21 14 9.1590 4.2960 5.1478 22 1 10.0252 3.2912 4.4805 23 1 9.9898 5.1615 6.0231 24 1 8.1346 3.6006 5.9677 25 6 6.1968 4.0521 -0.0210 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9562 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9900 0.6024 0.0006 34 1 5.8669 0.8448 -1.2356 35 1 5.7921 2.3705 -2.1506 36 1 8.1221 1.4213 -0.4190 37 1 8.0872 1.4638 -2.1984 38 1 9.2632 3.4472 -1.2686 39 1 7.7853 3.9198 -2.1404 40 1 6.4725 6.3285 -0.8399 41 1 7.9452 7.3269 -0.8844 42 1 7.7859 5.9267 -1.9721 43 1 8.2191 6.9896 1.5532 44 1 6.7888 5.9330 1.6306 45 1 7.3277 6.4700 5.1630 46 1 5.8172 4.5654 -0.9046 47 1 5.8497 4.5669 0.8749 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411220146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:55 Heat of formation + Delta-G solvation = -82.777227 kcal Electronic energy + Delta-G solvation = -23396.775955 eV Core-core repulsion = 20191.352350 eV Total energy + Delta-G solvation = -3205.423605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.35457 -39.70246 -36.80127 -36.30633 -34.53367 -33.52085 -32.00198 -31.07009 -29.16601 -27.41128 -25.64698 -24.70842 -24.55016 -22.57054 -21.76769 -20.98268 -20.07192 -18.34546 -18.08369 -17.35991 -16.83083 -16.52865 -16.43041 -15.73292 -15.70221 -15.21666 -15.04139 -14.77822 -14.51902 -14.08521 -13.84605 -13.72505 -13.68430 -13.46442 -13.29142 -13.00310 -12.94592 -12.82447 -12.57019 -12.36371 -12.24908 -12.04374 -11.94571 -11.75659 -11.71723 -11.59388 -11.41455 -11.07023 -10.86615 -10.71253 -10.47566 -10.12239 -8.90645 -8.07668 -6.13194 1.42232 1.42476 1.56393 1.60327 2.15048 2.48774 3.14707 3.30066 3.66258 3.84885 3.91625 3.98011 4.07249 4.17097 4.27383 4.33463 4.36706 4.40003 4.43391 4.52663 4.65160 4.69202 4.74455 4.78623 4.86364 4.87616 4.91089 5.05375 5.10649 5.12790 5.13993 5.21189 5.21684 5.24253 5.27033 5.33940 5.48115 5.50170 5.51950 5.70778 5.90638 6.30750 6.44991 6.52571 6.57897 7.01168 7.24427 7.52502 9.05158 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.004755 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.684865 B = 5887.464951 C = 6815.397029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.114 3.886 4 N -0.715 5.715 5 C 0.517 3.483 6 O -0.589 6.589 7 C -0.099 4.099 8 H 0.104 0.896 9 C -0.097 4.097 10 C -0.107 4.107 11 C 0.045 3.955 12 N -0.525 5.525 13 C 0.096 3.904 14 H 0.074 0.926 15 C -0.174 4.174 16 C 0.034 3.966 17 C -0.492 4.492 18 H 0.064 0.936 19 C -0.010 4.010 20 N -0.945 5.945 21 Si 0.960 3.040 22 H -0.258 1.258 23 H -0.283 1.283 24 H -0.286 1.286 25 C 0.091 3.909 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.417 0.583 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.038 0.962 41 H 0.058 0.942 42 H 0.068 0.932 43 H -0.013 1.013 44 H -0.012 1.012 45 H 0.257 0.743 46 H 0.025 0.975 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.873 -17.329 -13.982 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.010 4.010 4 N -0.368 5.368 5 C 0.304 3.696 6 O -0.469 6.469 7 C -0.121 4.121 8 H 0.122 0.878 9 C -0.135 4.135 10 C -0.145 4.145 11 C -0.083 4.083 12 N -0.249 5.249 13 C -0.012 4.012 14 H 0.092 0.908 15 C -0.233 4.233 16 C -0.004 4.004 17 C -0.531 4.531 18 H 0.082 0.918 19 C -0.205 4.205 20 N -0.587 5.587 21 Si 0.786 3.214 22 H -0.182 1.182 23 H -0.209 1.209 24 H -0.212 1.212 25 C -0.038 4.038 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.254 0.746 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.005 0.995 44 H 0.007 0.993 45 H 0.065 0.935 46 H 0.043 0.957 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.206 -16.807 -13.443 22.696 hybrid contribution -0.055 0.654 0.626 0.908 sum -7.261 -16.153 -12.817 21.861 Atomic orbital electron populations 1.21698 0.94191 1.02898 1.02066 1.21682 0.97192 0.93441 1.03889 1.21478 0.79219 0.99171 1.01082 1.45879 1.07591 1.08419 1.74884 1.20960 0.90600 0.83584 0.74478 1.90686 1.71429 1.33453 1.51303 1.21308 0.89765 0.98097 1.02895 0.87768 1.21552 0.96701 1.00939 0.94330 1.21567 0.94436 0.94902 1.03570 1.22278 1.00181 0.95780 0.90019 1.61910 1.06705 1.18393 1.37880 1.21603 0.98158 0.86753 0.94719 0.90805 1.22388 1.00450 1.00843 0.99596 1.19072 0.95035 0.94100 0.92146 1.21486 1.25001 1.15640 0.90927 0.91827 1.25935 0.96447 0.96874 1.01280 1.70138 1.38602 1.33642 1.16352 0.85460 0.78278 0.78864 0.78799 1.18184 1.20939 1.21183 1.21505 0.88129 0.94970 0.99185 0.93016 0.92442 0.90731 0.89625 0.90474 0.93595 0.92490 0.74558 0.88103 0.92034 0.91079 0.88311 0.90544 0.95043 0.94297 0.92338 0.91295 0.99458 0.99347 0.93457 0.95737 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.91 71.98 0.71 -1.00 16 2 C -0.12 -1.50 6.05 30.59 0.19 -1.32 16 3 C 0.11 2.32 5.67 86.38 0.49 2.81 16 4 N -0.71 -15.52 5.46 -463.07 -2.53 -18.05 16 5 C 0.52 16.41 7.16 87.66 0.63 17.04 16 6 O -0.59 -24.87 15.98 -3.03 -0.05 -24.92 16 7 C -0.10 -3.00 2.69 -11.49 -0.03 -3.03 16 8 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 9 C -0.10 -2.02 5.16 30.67 0.16 -1.86 16 10 C -0.11 -2.25 6.09 30.65 0.19 -2.06 16 11 C 0.04 1.27 5.14 86.33 0.44 1.71 16 12 N -0.53 -20.19 4.25 -871.13 -3.70 -23.89 16 13 C 0.10 4.10 2.28 44.92 0.10 4.20 16 14 H 0.07 3.06 7.97 -2.39 -0.02 3.04 16 15 C -0.17 -6.46 8.44 71.98 0.61 -5.85 16 16 C 0.03 1.86 4.35 29.85 0.13 1.99 16 17 C -0.49 -28.63 8.77 25.60 0.22 -28.40 16 18 H 0.06 3.58 7.75 -2.91 -0.02 3.56 16 19 C -0.01 -0.60 5.46 84.66 0.46 -0.14 16 20 N -0.94 -60.51 13.29 21.45 0.28 -60.22 16 21 Si 0.96 46.20 29.54 68.60 2.03 48.23 16 22 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 C 0.09 3.61 3.10 86.33 0.27 3.88 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.42 5.93 7.94 -92.71 -0.74 5.20 16 34 H 0.10 1.35 7.65 -2.38 -0.02 1.33 16 35 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 2.07 8.01 -2.39 -0.02 2.05 16 39 H 0.03 0.85 6.90 -2.39 -0.02 0.84 16 40 H 0.04 1.56 6.45 -2.39 -0.02 1.54 16 41 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.07 2.13 6.84 -2.39 -0.02 2.12 16 43 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 44 H -0.01 -0.73 6.35 -2.39 -0.02 -0.75 16 45 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.02 0.99 6.51 -2.38 -0.02 0.98 16 47 H 0.04 1.89 6.17 -2.39 -0.01 1.87 16 Total: -1.00 -76.92 362.81 0.79 -76.13 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.19 Total: 14.75 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 4.57 Total: -12.03 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -5.94 Total: -102.16 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -76.92 0.79 -76.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411220146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.644 kcal (2) G-P(sol) polarization free energy of solvation -76.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds