Wall clock time and date at job start Tue Mar 31 2020 06:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47435 * 2 1 4 4 N 1.46494 * 109.47382 * 179.97438 * 3 2 1 5 5 C 1.37103 * 120.00121 * 89.11417 * 4 3 2 6 6 H 1.07994 * 119.99765 * 353.69935 * 5 4 3 7 7 C 1.38953 * 119.99930 * 173.97726 * 5 4 3 8 8 N 1.31408 * 120.00105 * 111.51952 * 7 5 4 9 9 Si 1.86796 * 119.99717 * 291.51910 * 7 5 4 10 10 H 1.48503 * 109.47470 * 90.00147 * 9 7 5 11 11 H 1.48503 * 109.47014 * 210.00148 * 9 7 5 12 12 H 1.48496 * 109.47576 * 329.99968 * 9 7 5 13 13 C 1.34775 * 120.00060 * 269.11371 * 4 3 2 14 14 O 1.21295 * 120.00142 * 184.39997 * 13 4 3 15 15 C 1.50704 * 120.00021 * 4.40168 * 13 4 3 16 16 H 1.09008 * 109.46913 * 4.34803 * 15 13 4 17 17 C 1.52998 * 109.47467 * 244.34607 * 15 13 4 18 18 N 1.46897 * 109.47064 * 124.34244 * 15 13 4 19 19 C 1.47446 * 111.00098 * 198.43008 * 18 15 13 20 20 H 1.09004 * 109.89027 * 242.66681 * 19 18 15 21 21 C 1.52996 * 109.88937 * 3.85291 * 19 18 15 22 22 C 1.54315 * 107.23397 * 123.26151 * 19 18 15 23 23 C 1.55138 * 103.02205 * 22.28129 * 22 19 18 24 24 C 1.47847 * 111.00467 * 319.27157 * 18 15 13 25 25 H 1.09001 * 110.36881 * 332.46613 * 24 18 15 26 26 C 1.53008 * 110.37172 * 94.69295 * 24 18 15 27 27 H 1.08993 * 109.46959 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47166 * 300.00214 * 1 2 3 29 29 H 1.09007 * 109.46720 * 60.00159 * 1 2 3 30 30 H 1.08999 * 109.47503 * 239.99370 * 2 1 3 31 31 H 1.09007 * 109.46720 * 119.99841 * 2 1 3 32 32 H 1.08999 * 109.47290 * 59.99239 * 3 2 1 33 33 H 1.09004 * 109.46694 * 300.00025 * 3 2 1 34 34 H 0.96998 * 120.00342 * 184.35602 * 8 7 5 35 35 H 1.08998 * 109.46733 * 307.88599 * 17 15 13 36 36 H 1.08997 * 109.46614 * 67.88491 * 17 15 13 37 37 H 1.08998 * 109.47316 * 187.88816 * 17 15 13 38 38 H 1.08999 * 109.47041 * 65.43138 * 21 19 18 39 39 H 1.08999 * 109.47425 * 185.43194 * 21 19 18 40 40 H 1.09003 * 109.46944 * 305.43904 * 21 19 18 41 41 H 1.09004 * 110.70575 * 263.89769 * 22 19 18 42 42 H 1.09003 * 110.85723 * 140.74002 * 22 19 18 43 43 H 1.08993 * 110.99407 * 206.25777 * 23 22 19 44 44 H 1.09001 * 111.01964 * 82.45242 * 23 22 19 45 45 H 1.08999 * 109.46566 * 69.83068 * 26 24 18 46 46 H 1.09000 * 109.46933 * 189.82867 * 26 24 18 47 47 H 1.08995 * 109.46970 * 309.83096 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1911 1.4239 -1.1863 6 1 3.6564 1.3067 -2.1172 7 6 5.5748 1.5501 -1.1909 8 7 6.3265 0.5295 -1.5376 9 14 6.3665 3.1705 -0.7044 10 1 6.6193 3.1784 0.7589 11 1 7.6524 3.3307 -1.4297 12 1 5.4573 4.2909 -1.0556 13 6 4.1784 1.4607 1.1679 14 8 5.3887 1.5413 1.1688 15 6 3.4277 1.3809 2.4723 16 1 2.3659 1.2366 2.2721 17 6 3.6271 2.6798 3.2558 18 7 3.9353 0.2503 3.2610 19 6 2.9740 -0.1359 4.3102 20 1 3.4212 0.0076 5.2939 21 6 1.7020 0.7051 4.1858 22 6 2.6401 -1.6274 4.0978 23 6 3.8596 -2.1473 3.2920 24 6 4.1897 -0.9245 2.4002 25 1 3.5369 -0.9040 1.5276 26 6 5.6565 -0.9592 1.9662 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 7.2925 0.5970 -1.4804 35 1 4.6924 2.8965 3.3347 36 1 3.1273 3.4975 2.7367 37 1 3.2037 2.5704 4.2542 38 1 1.2000 0.4681 3.2478 39 1 1.0366 0.4832 5.0201 40 1 1.9632 1.7633 4.2008 41 1 1.7216 -1.7385 3.5214 42 1 2.5593 -2.1468 5.0527 43 1 3.5873 -3.0109 2.6853 44 1 4.6929 -2.3845 3.9535 45 1 6.2842 -1.1941 2.8258 46 1 5.7905 -1.7219 1.1992 47 1 5.9396 0.0137 1.5646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413199261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:21 Heat of formation + Delta-G solvation = 18.162578 kcal Electronic energy + Delta-G solvation = -25762.728065 eV Core-core repulsion = 22561.681538 eV Total energy + Delta-G solvation = -3201.046527 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.14290 -37.83101 -35.15711 -33.58899 -32.79200 -31.58289 -31.48055 -28.47437 -27.53875 -26.13911 -24.87469 -23.50524 -22.54479 -21.22659 -20.16997 -19.78881 -18.22956 -17.34269 -16.02832 -15.67322 -15.02713 -14.91977 -14.38761 -14.04951 -13.83420 -13.53748 -13.23383 -13.00875 -12.69171 -12.67540 -12.29048 -12.16859 -12.10651 -11.72276 -11.66279 -11.46401 -11.43434 -11.11421 -11.01829 -10.78752 -10.74235 -10.58170 -10.46470 -10.34670 -10.21827 -10.06109 -10.01060 -9.83013 -9.56805 -8.30807 -7.95982 -7.63424 -7.43316 -6.46530 -3.33839 3.52458 3.69402 3.79652 3.97247 4.35609 4.60348 4.83243 4.93895 5.01686 5.08631 5.13467 5.32509 5.39902 5.50046 5.55417 5.60447 5.62352 5.74457 5.79088 5.83471 5.88638 5.92805 5.98977 6.03142 6.06933 6.16898 6.19442 6.22179 6.26038 6.29238 6.37350 6.44200 6.52379 6.57878 6.59979 6.79701 6.85573 6.87686 7.00334 7.55593 7.62827 7.67462 7.98161 8.06537 8.87223 9.27491 9.62312 10.27688 10.43093 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016255 B = 0.008589 C = 0.007611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.184117 B = 3259.377374 C = 3678.176722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.108 3.892 4 N -0.412 5.412 5 C -0.478 4.478 6 H 0.094 0.906 7 C 0.195 3.805 8 N -0.752 5.752 9 Si 0.860 3.140 10 H -0.243 1.243 11 H -0.313 1.313 12 H -0.288 1.288 13 C 0.392 3.608 14 O -0.544 6.544 15 C 0.063 3.937 16 H 0.059 0.941 17 C -0.137 4.137 18 N -0.500 5.500 19 C 0.069 3.931 20 H 0.079 0.921 21 C -0.185 4.185 22 C -0.137 4.137 23 C -0.127 4.127 24 C 0.078 3.922 25 H 0.059 0.941 26 C -0.173 4.173 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.276 0.724 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.031 0.969 46 H 0.038 0.962 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 -2.347 8.682 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.179 4.179 3 C -0.017 4.017 4 N -0.128 5.128 5 C -0.595 4.595 6 H 0.112 0.888 7 C -0.032 4.032 8 N -0.376 5.376 9 Si 0.687 3.313 10 H -0.168 1.168 11 H -0.243 1.243 12 H -0.214 1.214 13 C 0.186 3.814 14 O -0.431 6.431 15 C -0.048 4.048 16 H 0.077 0.923 17 C -0.194 4.194 18 N -0.225 5.225 19 C -0.039 4.039 20 H 0.097 0.903 21 C -0.243 4.243 22 C -0.176 4.176 23 C -0.165 4.165 24 C -0.029 4.029 25 H 0.076 0.924 26 C -0.230 4.230 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.918 -2.286 8.758 12.707 hybrid contribution -0.541 0.351 -0.179 0.669 sum -9.459 -1.935 8.579 12.916 Atomic orbital electron populations 1.21720 0.96266 1.01156 1.01348 1.22011 0.94641 0.98401 1.02884 1.21479 0.83142 0.95861 1.01208 1.43631 1.03191 1.60592 1.05372 1.18143 0.89507 1.66966 0.84924 0.88844 1.24894 0.95511 0.96466 0.86283 1.70512 1.07071 1.29621 1.30427 0.87808 0.76172 0.86245 0.81119 1.16834 1.24267 1.21435 1.19383 0.88286 0.90126 0.83653 1.90140 1.13645 1.55171 1.84166 1.21888 0.97479 0.92342 0.93115 0.92334 1.21875 1.03293 0.95450 0.98827 1.63673 1.41026 1.05611 1.12231 1.22393 0.91189 0.93323 0.97026 0.90318 1.22697 0.97837 1.02439 1.01301 1.22867 0.98415 0.96093 1.00212 1.22806 0.97461 0.97926 0.98354 1.22511 0.99057 0.87426 0.93933 0.92351 1.22600 0.93181 1.08055 0.99125 0.93089 0.93244 0.92751 0.90977 0.92363 0.92322 0.91137 0.91349 0.91284 0.93121 0.92124 0.92527 0.92835 0.90163 0.91817 0.91535 0.91605 0.91135 0.94948 0.94286 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.91 37.16 0.37 -1.50 16 2 C -0.14 -2.34 6.05 -26.73 -0.16 -2.51 16 3 C 0.11 2.01 4.95 -4.05 -0.02 1.99 16 4 N -0.41 -9.76 2.62 -114.81 -0.30 -10.06 16 5 C -0.48 -12.97 9.60 -14.93 -0.14 -13.11 16 6 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 7 C 0.20 5.45 3.72 -17.47 -0.06 5.39 16 8 N -0.75 -21.18 13.95 55.50 0.77 -20.40 16 9 Si 0.86 22.79 26.75 -169.99 -4.55 18.25 16 10 H -0.24 -6.78 6.05 56.52 0.34 -6.44 16 11 H -0.31 -8.21 7.11 56.52 0.40 -7.81 16 12 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 13 C 0.39 9.28 4.12 -10.98 -0.05 9.23 16 14 O -0.54 -14.67 7.30 5.54 0.04 -14.63 16 15 C 0.06 1.21 1.57 -68.86 -0.11 1.10 16 16 H 0.06 1.02 2.47 -51.92 -0.13 0.89 16 17 C -0.14 -2.40 8.63 37.16 0.32 -2.08 16 18 N -0.50 -9.24 4.66 -209.04 -0.97 -10.22 16 19 C 0.07 1.01 3.76 -66.73 -0.25 0.76 16 20 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 21 C -0.19 -2.36 7.66 37.16 0.28 -2.07 16 22 C -0.14 -1.84 6.47 -24.91 -0.16 -2.00 16 23 C -0.13 -1.98 6.50 -24.60 -0.16 -2.14 16 24 C 0.08 1.52 2.45 -66.18 -0.16 1.36 16 25 H 0.06 1.24 4.98 -51.93 -0.26 0.99 16 26 C -0.17 -3.85 9.34 37.16 0.35 -3.51 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.06 1.01 5.62 -51.93 -0.29 0.72 16 32 H 0.06 0.98 6.18 -51.93 -0.32 0.65 16 33 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 34 H 0.28 7.36 8.31 -40.82 -0.34 7.03 16 35 H 0.07 1.38 7.99 -51.93 -0.42 0.96 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.89 5.65 -51.93 -0.29 0.60 16 38 H 0.06 0.74 6.76 -51.93 -0.35 0.39 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 1.04 4.12 -51.93 -0.21 0.82 16 41 H 0.06 0.83 7.76 -51.93 -0.40 0.42 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 1.08 7.90 -51.93 -0.41 0.67 16 45 H 0.03 0.66 7.93 -51.93 -0.41 0.25 16 46 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.13 3.52 3.76 -54.80 -0.21 3.32 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -29.91 337.25 -7.85 -37.76 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.97 Total: 3.29 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 0.04 Total: -9.08 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: -0.50 Total: -40.68 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.04 Total: -14.63 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.55 Total: 18.25 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.91 -7.85 -37.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413199261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.922 kcal (2) G-P(sol) polarization free energy of solvation -29.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds