Wall clock time and date at job start Tue Mar 31 2020 06:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47435 * 2 1 4 4 N 1.46494 * 109.47382 * 179.97438 * 3 2 1 5 5 C 1.37103 * 120.00121 * 89.11417 * 4 3 2 6 6 H 1.07994 * 119.99765 * 353.69935 * 5 4 3 7 7 C 1.38953 * 119.99930 * 173.97726 * 5 4 3 8 8 N 1.31408 * 120.00105 * 111.51952 * 7 5 4 9 9 Si 1.86796 * 119.99717 * 291.51910 * 7 5 4 10 10 H 1.48503 * 109.47470 * 90.00147 * 9 7 5 11 11 H 1.48503 * 109.47014 * 210.00148 * 9 7 5 12 12 H 1.48496 * 109.47576 * 329.99968 * 9 7 5 13 13 C 1.34775 * 120.00060 * 269.11371 * 4 3 2 14 14 O 1.21295 * 120.00142 * 184.39997 * 13 4 3 15 15 C 1.50704 * 120.00021 * 4.40168 * 13 4 3 16 16 H 1.09008 * 109.46913 * 4.34803 * 15 13 4 17 17 C 1.52998 * 109.47467 * 244.34607 * 15 13 4 18 18 N 1.46897 * 109.47064 * 124.34244 * 15 13 4 19 19 C 1.47446 * 111.00098 * 198.43008 * 18 15 13 20 20 H 1.09004 * 109.89027 * 242.66681 * 19 18 15 21 21 C 1.52996 * 109.88937 * 3.85291 * 19 18 15 22 22 C 1.54315 * 107.23397 * 123.26151 * 19 18 15 23 23 C 1.55138 * 103.02205 * 22.28129 * 22 19 18 24 24 C 1.47847 * 111.00467 * 319.27157 * 18 15 13 25 25 H 1.09001 * 110.36881 * 332.46613 * 24 18 15 26 26 C 1.53008 * 110.37172 * 94.69295 * 24 18 15 27 27 H 1.08993 * 109.46959 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47166 * 300.00214 * 1 2 3 29 29 H 1.09007 * 109.46720 * 60.00159 * 1 2 3 30 30 H 1.08999 * 109.47503 * 239.99370 * 2 1 3 31 31 H 1.09007 * 109.46720 * 119.99841 * 2 1 3 32 32 H 1.08999 * 109.47290 * 59.99239 * 3 2 1 33 33 H 1.09004 * 109.46694 * 300.00025 * 3 2 1 34 34 H 0.96998 * 120.00342 * 184.35602 * 8 7 5 35 35 H 1.08998 * 109.46733 * 307.88599 * 17 15 13 36 36 H 1.08997 * 109.46614 * 67.88491 * 17 15 13 37 37 H 1.08998 * 109.47316 * 187.88816 * 17 15 13 38 38 H 1.08999 * 109.47041 * 65.43138 * 21 19 18 39 39 H 1.08999 * 109.47425 * 185.43194 * 21 19 18 40 40 H 1.09003 * 109.46944 * 305.43904 * 21 19 18 41 41 H 1.09004 * 110.70575 * 263.89769 * 22 19 18 42 42 H 1.09003 * 110.85723 * 140.74002 * 22 19 18 43 43 H 1.08993 * 110.99407 * 206.25777 * 23 22 19 44 44 H 1.09001 * 111.01964 * 82.45242 * 23 22 19 45 45 H 1.08999 * 109.46566 * 69.83068 * 26 24 18 46 46 H 1.09000 * 109.46933 * 189.82867 * 26 24 18 47 47 H 1.08995 * 109.46970 * 309.83096 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1911 1.4239 -1.1863 6 1 3.6564 1.3067 -2.1172 7 6 5.5748 1.5501 -1.1909 8 7 6.3265 0.5295 -1.5376 9 14 6.3665 3.1705 -0.7044 10 1 6.6193 3.1784 0.7589 11 1 7.6524 3.3307 -1.4297 12 1 5.4573 4.2909 -1.0556 13 6 4.1784 1.4607 1.1679 14 8 5.3887 1.5413 1.1688 15 6 3.4277 1.3809 2.4723 16 1 2.3659 1.2366 2.2721 17 6 3.6271 2.6798 3.2558 18 7 3.9353 0.2503 3.2610 19 6 2.9740 -0.1359 4.3102 20 1 3.4212 0.0076 5.2939 21 6 1.7020 0.7051 4.1858 22 6 2.6401 -1.6274 4.0978 23 6 3.8596 -2.1473 3.2920 24 6 4.1897 -0.9245 2.4002 25 1 3.5369 -0.9040 1.5276 26 6 5.6565 -0.9592 1.9662 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 7.2925 0.5970 -1.4804 35 1 4.6924 2.8965 3.3347 36 1 3.1273 3.4975 2.7367 37 1 3.2037 2.5704 4.2542 38 1 1.2000 0.4681 3.2478 39 1 1.0366 0.4832 5.0201 40 1 1.9632 1.7633 4.2008 41 1 1.7216 -1.7385 3.5214 42 1 2.5593 -2.1468 5.0527 43 1 3.5873 -3.0109 2.6853 44 1 4.6929 -2.3845 3.9535 45 1 6.2842 -1.1941 2.8258 46 1 5.7905 -1.7219 1.1992 47 1 5.9396 0.0137 1.5646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413199261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:20 Heat of formation + Delta-G solvation = -1.114765 kcal Electronic energy + Delta-G solvation = -25763.563993 eV Core-core repulsion = 22561.681538 eV Total energy + Delta-G solvation = -3201.882455 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.67313 -39.43629 -36.83786 -35.19182 -34.51724 -33.19230 -32.92797 -29.81593 -28.94469 -27.79918 -26.49297 -24.81347 -24.13611 -22.59948 -21.49966 -21.42948 -19.87099 -18.98561 -17.70290 -17.13764 -16.88743 -16.35636 -15.96413 -15.64507 -15.33568 -15.23790 -14.59269 -14.50730 -14.25760 -14.02764 -13.93434 -13.69708 -13.50132 -13.19798 -13.05601 -12.98109 -12.81994 -12.64069 -12.55900 -12.28442 -12.11723 -12.09823 -12.01196 -11.91289 -11.73281 -11.64798 -11.40302 -11.32585 -11.19551 -10.41259 -9.89859 -9.43576 -9.01242 -8.60003 -5.43465 1.37580 1.52914 1.63432 2.15871 2.42519 2.69554 3.12169 3.23762 3.76603 3.79658 3.96458 4.02655 4.06150 4.20274 4.21921 4.36454 4.47743 4.50257 4.55398 4.55902 4.57217 4.69063 4.75127 4.77789 4.79989 4.91595 4.93450 4.97110 5.01780 5.03143 5.10369 5.17885 5.20736 5.22754 5.27577 5.38284 5.42743 5.49413 5.51275 5.57584 5.92398 5.98258 6.24860 6.37329 6.85064 7.29901 7.65969 8.26723 8.41696 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016255 B = 0.008589 C = 0.007611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.184117 B = 3259.377374 C = 3678.176722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.131 4.131 3 C 0.102 3.898 4 N -0.428 5.428 5 C -0.496 4.496 6 H 0.077 0.923 7 C 0.176 3.824 8 N -0.778 5.778 9 Si 0.898 3.102 10 H -0.267 1.267 11 H -0.310 1.310 12 H -0.288 1.288 13 C 0.394 3.606 14 O -0.577 6.577 15 C 0.071 3.929 16 H 0.082 0.918 17 C -0.134 4.134 18 N -0.516 5.516 19 C 0.064 3.936 20 H 0.088 0.912 21 C -0.182 4.182 22 C -0.126 4.126 23 C -0.122 4.122 24 C 0.079 3.921 25 H 0.037 0.963 26 C -0.169 4.169 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.278 0.722 35 H 0.037 0.963 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.039 0.961 46 H 0.021 0.979 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.103 -2.567 11.330 17.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 C -0.022 4.022 4 N -0.145 5.145 5 C -0.614 4.614 6 H 0.095 0.905 7 C -0.049 4.049 8 N -0.405 5.405 9 Si 0.726 3.274 10 H -0.193 1.193 11 H -0.240 1.240 12 H -0.214 1.214 13 C 0.187 3.813 14 O -0.466 6.466 15 C -0.040 4.040 16 H 0.100 0.900 17 C -0.191 4.191 18 N -0.243 5.243 19 C -0.044 4.044 20 H 0.106 0.894 21 C -0.239 4.239 22 C -0.164 4.164 23 C -0.160 4.160 24 C -0.029 4.029 25 H 0.055 0.945 26 C -0.226 4.226 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.040 0.960 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.982 -2.498 11.396 16.723 hybrid contribution 0.430 0.379 -0.938 1.099 sum -11.552 -2.119 10.458 15.726 Atomic orbital electron populations 1.21661 0.92612 1.02533 1.02742 1.21880 0.97627 0.96407 1.01012 1.21768 0.80283 0.97549 1.02550 1.43782 1.05316 1.61082 1.04313 1.18091 0.89541 1.67880 0.85882 0.90495 1.25255 0.96165 0.97331 0.86131 1.70552 1.07296 1.30278 1.32343 0.87172 0.75825 0.85115 0.79264 1.19337 1.24002 1.21377 1.20353 0.88254 0.87491 0.85180 1.90132 1.15669 1.55753 1.85053 1.21851 0.97780 0.93611 0.90754 0.90021 1.21898 1.01632 0.94829 1.00769 1.63591 1.43249 1.05015 1.12416 1.22569 0.91436 0.94676 0.95707 0.89384 1.22643 0.97072 1.01705 1.02479 1.22845 0.97305 0.95032 1.01237 1.22751 0.98891 0.96375 0.98030 1.22364 0.96154 0.90081 0.94334 0.94538 1.22452 0.96137 1.05218 0.98760 0.91762 0.91105 0.92097 0.94125 0.93036 0.89678 0.90965 0.91187 0.94424 0.92081 0.88638 0.92738 0.89884 0.90388 0.90900 0.88707 0.90860 0.90940 0.94185 0.95993 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.91 71.98 0.71 -2.33 16 2 C -0.13 -4.19 6.05 30.59 0.19 -4.01 16 3 C 0.10 3.68 4.95 86.38 0.43 4.11 16 4 N -0.43 -20.53 2.62 -635.54 -1.67 -22.20 16 5 C -0.50 -27.83 9.60 84.04 0.81 -27.02 16 6 H 0.08 4.46 8.06 -2.91 -0.02 4.44 16 7 C 0.18 10.17 3.72 84.93 0.32 10.48 16 8 N -0.78 -45.81 13.95 21.66 0.30 -45.50 16 9 Si 0.90 48.62 26.75 68.60 1.83 50.45 16 10 H -0.27 -15.37 6.05 99.48 0.60 -14.77 16 11 H -0.31 -16.42 7.11 99.48 0.71 -15.72 16 12 H -0.29 -15.31 7.11 99.48 0.71 -14.61 16 13 C 0.39 18.78 4.12 87.66 0.36 19.14 16 14 O -0.58 -32.12 7.30 -3.08 -0.02 -32.14 16 15 C 0.07 2.60 1.57 44.17 0.07 2.67 16 16 H 0.08 2.59 2.47 -2.38 -0.01 2.58 16 17 C -0.13 -4.40 8.63 71.98 0.62 -3.78 16 18 N -0.52 -18.14 4.66 -815.26 -3.80 -21.94 16 19 C 0.06 1.60 3.76 45.26 0.17 1.77 16 20 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 21 C -0.18 -3.67 7.66 71.98 0.55 -3.12 16 22 C -0.13 -2.81 6.47 31.77 0.21 -2.61 16 23 C -0.12 -3.52 6.50 31.98 0.21 -3.31 16 24 C 0.08 3.00 2.45 45.39 0.11 3.11 16 25 H 0.04 1.56 4.98 -2.39 -0.01 1.55 16 26 C -0.17 -7.74 9.34 71.98 0.67 -7.07 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.71 5.62 -2.38 -0.01 1.70 16 32 H 0.09 2.59 6.18 -2.39 -0.01 2.57 16 33 H 0.07 2.56 8.05 -2.39 -0.02 2.54 16 34 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.04 1.47 7.99 -2.39 -0.02 1.45 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.10 2.46 5.65 -2.39 -0.01 2.45 16 38 H 0.05 1.14 6.76 -2.39 -0.02 1.12 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.61 4.12 -2.39 -0.01 1.60 16 41 H 0.07 1.53 7.76 -2.39 -0.02 1.51 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.07 2.06 7.90 -2.39 -0.02 2.04 16 45 H 0.04 1.69 7.93 -2.39 -0.02 1.67 16 46 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.10 5.40 3.76 -47.82 -0.18 5.22 16 Total: -1.00 -68.91 337.25 2.73 -66.18 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.67 Total: 17.12 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 5.42 Total: -11.96 kcal Atomic # 7 Polarization: -84.48 SS G_CDS: -5.16 Total: -89.64 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.02 Total: -32.14 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 1.83 Total: 50.45 kcal Total: -68.91 2.73 -66.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413199261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.061 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds