Wall clock time and date at job start Tue Mar 31 2020 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46816 * 2 1 4 4 N 1.46504 * 109.46519 * 180.02562 * 3 2 1 5 5 C 1.37103 * 119.99842 * 86.49088 * 4 3 2 6 6 H 1.08001 * 119.99565 * 165.76033 * 5 4 3 7 7 C 1.38949 * 120.00122 * 345.76034 * 5 4 3 8 8 N 1.31413 * 119.99833 * 4.29614 * 7 5 4 9 9 Si 1.86795 * 119.99912 * 184.29499 * 7 5 4 10 10 H 1.48501 * 109.46857 * 90.00285 * 9 7 5 11 11 H 1.48502 * 109.47148 * 210.00034 * 9 7 5 12 12 H 1.48502 * 109.47201 * 330.00049 * 9 7 5 13 13 C 1.34775 * 120.00197 * 266.48013 * 4 3 2 14 14 O 1.21290 * 120.00459 * 185.30707 * 13 4 3 15 15 C 1.50708 * 119.99570 * 5.31414 * 13 4 3 16 16 H 1.08994 * 109.47275 * 336.18112 * 15 13 4 17 17 C 1.53003 * 109.46935 * 96.18378 * 15 13 4 18 18 N 1.46900 * 109.46879 * 216.17892 * 15 13 4 19 19 C 1.48538 * 110.99749 * 72.87106 * 18 15 13 20 20 H 1.09001 * 110.66703 * 41.28076 * 19 18 15 21 21 C 1.53005 * 110.66362 * 278.15440 * 19 18 15 22 22 C 1.54934 * 103.22776 * 159.72276 * 19 18 15 23 23 C 1.54604 * 102.91811 * 322.58260 * 22 19 18 24 24 C 1.47900 * 110.99981 * 190.26515 * 18 15 13 25 25 H 1.08995 * 109.91580 * 333.50726 * 24 18 15 26 26 C 1.53001 * 109.91742 * 94.80877 * 24 18 15 27 27 H 1.09004 * 109.47229 * 59.99912 * 1 2 3 28 28 H 1.09000 * 109.46761 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47012 * 299.99604 * 1 2 3 30 30 H 1.09004 * 109.46555 * 240.00227 * 2 1 3 31 31 H 1.08995 * 109.47273 * 120.00701 * 2 1 3 32 32 H 1.09000 * 109.47007 * 60.00392 * 3 2 1 33 33 H 1.09004 * 109.47293 * 300.00049 * 3 2 1 34 34 H 0.96995 * 119.99705 * 179.97438 * 8 7 5 35 35 H 1.09000 * 109.47015 * 305.25937 * 17 15 13 36 36 H 1.08996 * 109.47349 * 65.26893 * 17 15 13 37 37 H 1.08998 * 109.46607 * 185.26691 * 17 15 13 38 38 H 1.08998 * 109.47059 * 68.56542 * 21 19 18 39 39 H 1.09004 * 109.46594 * 188.56141 * 21 19 18 40 40 H 1.08994 * 109.47565 * 308.56049 * 21 19 18 41 41 H 1.09003 * 110.72615 * 204.23052 * 22 19 18 42 42 H 1.08998 * 110.72965 * 80.93785 * 22 19 18 43 43 H 1.08994 * 110.31000 * 263.04078 * 23 22 19 44 44 H 1.08999 * 110.30611 * 140.87564 * 23 22 19 45 45 H 1.08997 * 109.47355 * 64.59849 * 26 24 18 46 46 H 1.09001 * 109.47156 * 184.60445 * 26 24 18 47 47 H 1.09005 * 109.46745 * 304.60444 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1900 1.3699 -1.1861 6 1 5.2451 1.5986 -1.2148 7 6 3.5267 1.0022 -2.3503 8 7 2.2275 0.8060 -2.3324 9 14 4.4820 0.7866 -3.9410 10 1 4.9431 -0.6204 -4.0547 11 1 3.6048 1.1147 -5.0935 12 1 5.6574 1.6942 -3.9395 13 6 4.1794 1.5139 1.1641 14 8 5.3884 1.6109 1.1599 15 6 3.4312 1.4730 2.4717 16 1 2.4050 1.8045 2.3136 17 6 3.4273 0.0418 3.0125 18 7 4.0889 2.3606 3.4400 19 6 3.8450 3.7871 3.1057 20 1 2.8117 3.9377 2.7931 21 6 4.8136 4.2604 2.0199 22 6 4.1238 4.5174 4.4433 23 6 3.5589 3.5370 5.4967 24 6 3.5373 2.1647 4.7982 25 1 2.5132 1.7972 4.7336 26 6 4.4038 1.1711 5.5745 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.7644 0.5497 -3.1452 35 1 3.0244 -0.6314 2.2558 36 1 4.4464 -0.2564 3.2587 37 1 2.8082 -0.0064 3.9083 38 1 4.5736 3.7664 1.0784 39 1 4.7226 5.3397 1.8973 40 1 5.8344 4.0126 2.3104 41 1 3.5951 5.4699 4.4803 42 1 5.1944 4.6634 4.5873 43 1 2.5495 3.8311 5.7844 44 1 4.2085 3.5060 6.3715 45 1 5.3975 1.5938 5.7226 46 1 3.9465 0.9697 6.5433 47 1 4.4847 0.2417 5.0106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413199268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:24 Heat of formation + Delta-G solvation = -28.552308 kcal Electronic energy + Delta-G solvation = -24875.801606 eV Core-core repulsion = 21672.729370 eV Total energy + Delta-G solvation = -3203.072236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33170 -39.56013 -37.13874 -34.81127 -33.79405 -33.34049 -33.09200 -29.77064 -29.19254 -27.77110 -26.37820 -24.82722 -24.30829 -22.32435 -21.51320 -20.92211 -20.13869 -18.76403 -18.17333 -17.39328 -16.37493 -16.16393 -15.77357 -15.54311 -15.34871 -15.30083 -14.56488 -14.44698 -14.17685 -13.83202 -13.70443 -13.47207 -13.38439 -13.22542 -12.95715 -12.91318 -12.81151 -12.73428 -12.49262 -12.40784 -12.28239 -12.15779 -12.06075 -11.80506 -11.75016 -11.51818 -11.48602 -11.36864 -11.30159 -10.55579 -10.12220 -9.51889 -9.18959 -8.08489 -5.81465 1.37825 1.41907 1.52121 2.12683 2.28488 2.83234 3.14449 3.31677 3.64864 3.78722 4.00691 4.04704 4.13192 4.18989 4.27689 4.43463 4.46754 4.50224 4.60829 4.62712 4.70526 4.72697 4.78203 4.81238 4.83957 4.91426 4.96192 5.00763 5.04008 5.11122 5.16219 5.22595 5.32024 5.35260 5.39316 5.42754 5.46024 5.50796 5.53597 5.76043 6.01731 6.09003 6.16364 6.28552 6.68358 7.30068 7.62229 8.20421 8.74944 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020706 B = 0.005946 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.934872 B = 4708.203259 C = 5276.588426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.116 4.116 3 C 0.136 3.864 4 N -0.464 5.464 5 C -0.330 4.330 6 H 0.066 0.934 7 C -0.002 4.002 8 N -0.875 5.875 9 Si 0.982 3.018 10 H -0.278 1.278 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.456 3.544 14 O -0.615 6.615 15 C 0.073 3.927 16 H 0.056 0.944 17 C -0.131 4.131 18 N -0.505 5.505 19 C 0.059 3.941 20 H 0.044 0.956 21 C -0.124 4.124 22 C -0.109 4.109 23 C -0.118 4.118 24 C 0.056 3.944 25 H 0.057 0.943 26 C -0.138 4.138 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.091 0.909 34 H 0.267 0.733 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.023 0.977 39 H 0.067 0.933 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.049 0.951 46 H 0.079 0.921 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.763 2.784 12.980 14.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.154 4.154 3 C 0.013 3.987 4 N -0.183 5.183 5 C -0.458 4.458 6 H 0.084 0.916 7 C -0.203 4.203 8 N -0.516 5.516 9 Si 0.807 3.193 10 H -0.204 1.204 11 H -0.194 1.194 12 H -0.207 1.207 13 C 0.245 3.755 14 O -0.500 6.500 15 C -0.039 4.039 16 H 0.074 0.926 17 C -0.189 4.189 18 N -0.231 5.231 19 C -0.049 4.049 20 H 0.062 0.938 21 C -0.181 4.181 22 C -0.147 4.147 23 C -0.156 4.156 24 C -0.052 4.052 25 H 0.075 0.925 26 C -0.196 4.196 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.783 2.654 12.781 13.902 hybrid contribution -0.148 -0.093 -1.454 1.465 sum -4.931 2.561 11.327 12.616 Atomic orbital electron populations 1.21484 0.94755 1.01034 1.01034 1.21969 0.96191 0.96893 1.00374 1.21660 0.79074 0.98041 0.99934 1.44019 1.06494 1.63291 1.04545 1.19539 0.94522 1.45571 0.86196 0.91614 1.25802 0.96933 0.96207 1.01329 1.70223 1.06985 1.45891 1.28477 0.85099 0.77940 0.78207 0.78009 1.20421 1.19430 1.20702 1.20455 0.87721 0.81934 0.85362 1.90463 1.16192 1.55778 1.87617 1.21626 0.95099 0.96187 0.90953 0.92608 1.21940 1.02446 0.93037 1.01441 1.64522 1.54412 1.02776 1.01407 1.22800 0.96824 0.88554 0.96735 0.93756 1.21607 0.99302 0.99698 0.97524 1.22476 1.01800 0.98394 0.92023 1.22467 1.02373 0.92555 0.98191 1.22515 0.97161 0.97426 0.88087 0.92481 1.21969 0.99545 0.98552 0.99503 0.93382 0.92724 0.92736 0.91187 0.95166 0.94200 0.89107 0.92184 0.92630 0.92515 0.89062 0.95812 0.91369 0.93714 0.89193 0.91311 0.89757 0.89483 0.93179 0.90223 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.91 71.98 0.71 -3.39 16 2 C -0.12 -4.79 5.53 30.60 0.17 -4.62 16 3 C 0.14 6.13 4.47 86.38 0.39 6.51 16 4 N -0.46 -24.25 2.63 -635.51 -1.67 -25.92 16 5 C -0.33 -18.94 9.48 84.04 0.80 -18.14 16 6 H 0.07 4.12 7.23 -2.91 -0.02 4.10 16 7 C 0.00 -0.11 5.33 84.93 0.45 0.34 16 8 N -0.88 -43.77 7.23 21.66 0.16 -43.61 16 9 Si 0.98 43.25 29.55 68.60 2.03 45.28 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.46 22.97 4.41 87.66 0.39 23.36 16 14 O -0.61 -35.91 14.92 -3.06 -0.05 -35.95 16 15 C 0.07 2.85 1.86 44.17 0.08 2.93 16 16 H 0.06 2.10 5.24 -2.39 -0.01 2.09 16 17 C -0.13 -4.46 7.61 71.98 0.55 -3.91 16 18 N -0.50 -17.66 4.28 -812.96 -3.48 -21.14 16 19 C 0.06 1.94 2.88 45.26 0.13 2.07 16 20 H 0.04 1.45 7.81 -2.39 -0.02 1.43 16 21 C -0.12 -4.80 8.20 71.98 0.59 -4.20 16 22 C -0.11 -2.61 6.50 31.80 0.21 -2.40 16 23 C -0.12 -2.39 6.57 31.48 0.21 -2.18 16 24 C 0.06 1.43 2.46 45.06 0.11 1.54 16 25 H 0.06 1.37 6.95 -2.39 -0.02 1.36 16 26 C -0.14 -3.24 8.85 71.98 0.64 -2.60 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 3.38 5.87 -2.39 -0.01 3.36 16 31 H 0.03 1.20 5.79 -2.39 -0.01 1.18 16 32 H 0.04 1.63 5.71 -2.39 -0.01 1.61 16 33 H 0.09 4.51 5.97 -2.39 -0.01 4.50 16 34 H 0.27 12.67 8.31 -92.71 -0.77 11.90 16 35 H 0.05 1.99 5.80 -2.39 -0.01 1.97 16 36 H 0.06 2.07 6.95 -2.39 -0.02 2.05 16 37 H 0.09 2.41 6.14 -2.39 -0.01 2.40 16 38 H 0.02 1.11 5.72 -2.39 -0.01 1.09 16 39 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.07 1.72 8.05 -2.39 -0.02 1.71 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 1.51 7.68 -2.39 -0.02 1.50 16 45 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.05 1.38 5.06 -2.38 -0.01 1.37 16 Total: -1.00 -65.28 341.58 3.35 -61.93 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.94 Total: 24.11 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 5.42 Total: -4.70 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -4.99 Total: -90.67 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.05 Total: -35.95 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.28 3.35 -61.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413199268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.382 kcal (2) G-P(sol) polarization free energy of solvation -65.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds