Wall clock time and date at job start Tue Mar 31 2020 06:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46945 * 2 1 4 4 N 1.46498 * 109.47153 * 179.97438 * 3 2 1 5 5 C 1.37094 * 120.00101 * 269.01506 * 4 3 2 6 6 H 1.08000 * 120.00167 * 142.19498 * 5 4 3 7 7 C 1.38949 * 119.99736 * 322.18774 * 5 4 3 8 8 N 1.31410 * 119.99723 * 161.52986 * 7 5 4 9 9 Si 1.86802 * 120.00347 * 341.52744 * 7 5 4 10 10 H 1.48495 * 109.47025 * 92.73959 * 9 7 5 11 11 H 1.48496 * 109.47089 * 212.73658 * 9 7 5 12 12 H 1.48496 * 109.46965 * 332.73729 * 9 7 5 13 13 C 1.34782 * 119.99817 * 89.01199 * 4 3 2 14 14 O 1.21296 * 119.99938 * 5.30231 * 13 4 3 15 15 C 1.50697 * 119.99783 * 185.30198 * 13 4 3 16 16 H 1.09000 * 109.47734 * 38.38351 * 15 13 4 17 17 C 1.53006 * 109.47177 * 278.37927 * 15 13 4 18 18 N 1.46901 * 109.47035 * 158.38585 * 15 13 4 19 19 C 1.47848 * 111.00126 * 168.17495 * 18 15 13 20 20 H 1.09000 * 110.37073 * 27.53501 * 19 18 15 21 21 C 1.52996 * 110.37231 * 265.19113 * 19 18 15 22 22 C 1.54909 * 104.79704 * 146.36112 * 19 18 15 23 23 C 1.55138 * 101.65273 * 322.93283 * 22 19 18 24 24 C 1.47440 * 111.00023 * 289.01774 * 18 15 13 25 25 H 1.08998 * 109.88920 * 117.17285 * 24 18 15 26 26 C 1.53003 * 109.88529 * 356.14693 * 24 18 15 27 27 H 1.08999 * 109.47368 * 60.00240 * 1 2 3 28 28 H 1.09002 * 109.47127 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47417 * 299.99595 * 1 2 3 30 30 H 1.09005 * 109.46994 * 240.00059 * 2 1 3 31 31 H 1.08999 * 109.46911 * 120.00036 * 2 1 3 32 32 H 1.09008 * 109.47399 * 299.99866 * 3 2 1 33 33 H 1.09005 * 109.47226 * 60.00201 * 3 2 1 34 34 H 0.97008 * 120.00340 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47457 * 296.76847 * 17 15 13 36 36 H 1.09002 * 109.46435 * 56.76482 * 17 15 13 37 37 H 1.08998 * 109.47460 * 176.75957 * 17 15 13 38 38 H 1.09001 * 109.47249 * 66.27083 * 21 19 18 39 39 H 1.08997 * 109.47241 * 186.26791 * 21 19 18 40 40 H 1.09002 * 109.47204 * 306.26688 * 21 19 18 41 41 H 1.08994 * 110.98868 * 204.84233 * 22 19 18 42 42 H 1.09000 * 110.98924 * 81.02263 * 22 19 18 43 43 H 1.09010 * 110.70345 * 277.27237 * 23 22 19 44 44 H 1.08999 * 110.71048 * 154.03563 * 23 22 19 45 45 H 1.09002 * 109.47109 * 61.12787 * 26 24 18 46 46 H 1.09000 * 109.47134 * 181.12212 * 26 24 18 47 47 H 1.08995 * 109.47728 * 301.12684 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.4631 1.1880 6 1 5.0999 0.8917 1.2965 7 6 3.7135 2.2194 2.2518 8 7 4.1332 1.9737 3.4726 9 14 2.4765 3.5855 1.9467 10 1 1.1001 3.0521 2.1084 11 1 2.7000 4.6826 2.9222 12 1 2.6461 4.1077 0.5670 13 6 4.1793 1.4223 -1.1662 14 8 3.5771 1.5011 -2.2162 15 6 5.6815 1.3017 -1.1662 16 1 5.9909 0.6136 -0.3795 17 6 6.3035 2.6768 -0.9149 18 7 6.1317 0.7913 -2.4681 19 6 7.5973 0.9235 -2.6110 20 1 8.0779 0.8962 -1.6330 21 6 7.9462 2.2218 -3.3414 22 6 8.0246 -0.3024 -3.4562 23 6 7.0750 -1.4030 -2.9142 24 6 5.7701 -0.6286 -2.6327 25 1 5.0813 -0.7412 -3.4698 26 6 5.1205 -1.1522 -1.3502 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.8004 2.5014 4.2154 35 1 6.0412 3.3491 -1.7317 36 1 5.9247 3.0807 0.0240 37 1 7.3877 2.5802 -0.8576 38 1 7.6663 3.0738 -2.7218 39 1 9.0180 2.2517 -3.5373 40 1 7.4030 2.2649 -4.2854 41 1 9.0672 -0.5602 -3.2706 42 1 7.8508 -0.1246 -4.5174 43 1 7.4717 -1.8364 -1.9960 44 1 6.9105 -2.1747 -3.6662 45 1 4.2104 -0.5878 -1.1473 46 1 4.8742 -2.2070 -1.4722 47 1 5.8140 -1.0350 -0.5175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413199271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:28 Heat of formation + Delta-G solvation = -14.852700 kcal Electronic energy + Delta-G solvation = -24947.459442 eV Core-core repulsion = 21744.981265 eV Total energy + Delta-G solvation = -3202.478177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.17129 -38.19524 -35.21231 -33.34366 -32.66720 -32.46801 -31.50410 -28.44385 -27.72833 -26.06708 -24.98821 -23.89839 -22.60305 -21.12654 -20.60997 -19.31336 -18.48797 -16.80315 -16.47539 -15.74589 -15.67124 -14.91281 -14.58253 -14.16485 -13.98779 -13.44160 -13.34189 -13.07222 -12.87825 -12.69208 -12.40279 -12.37256 -11.94878 -11.74187 -11.68552 -11.53145 -11.43217 -11.34308 -11.02287 -10.90900 -10.89179 -10.78694 -10.58493 -10.45623 -10.36122 -10.25252 -10.17260 -10.02670 -9.70788 -9.10460 -8.46710 -7.79049 -7.60022 -6.45815 -4.06636 3.04954 3.22032 3.30448 3.77473 4.05674 4.13981 4.59734 4.86169 4.90651 4.97064 5.14384 5.43925 5.55474 5.59225 5.61678 5.65501 5.72896 5.75142 5.81184 5.87581 5.89979 5.94081 5.97965 6.02873 6.04690 6.08558 6.14567 6.23226 6.31141 6.34033 6.38164 6.42527 6.44310 6.48026 6.57529 6.63679 6.72842 6.78691 6.90102 6.91582 7.41086 7.52846 7.58547 8.08783 8.25858 8.99336 9.41153 9.74794 10.64811 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018741 B = 0.006747 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.657987 B = 4148.787047 C = 4813.386073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.102 3.898 4 N -0.474 5.474 5 C -0.338 4.338 6 H 0.102 0.898 7 C 0.066 3.934 8 N -0.866 5.866 9 Si 0.878 3.122 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.262 1.262 13 C 0.500 3.500 14 O -0.578 6.578 15 C 0.073 3.927 16 H 0.072 0.928 17 C -0.141 4.141 18 N -0.501 5.501 19 C 0.068 3.932 20 H 0.053 0.947 21 C -0.141 4.141 22 C -0.123 4.123 23 C -0.139 4.139 24 C 0.078 3.922 25 H 0.082 0.918 26 C -0.177 4.177 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.274 0.726 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.053 0.947 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 -3.673 -7.825 9.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.021 4.021 4 N -0.196 5.196 5 C -0.465 4.465 6 H 0.120 0.880 7 C -0.140 4.140 8 N -0.502 5.502 9 Si 0.706 3.294 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.186 1.186 13 C 0.289 3.711 14 O -0.461 6.461 15 C -0.038 4.038 16 H 0.090 0.910 17 C -0.199 4.199 18 N -0.226 5.226 19 C -0.040 4.040 20 H 0.071 0.929 21 C -0.198 4.198 22 C -0.161 4.161 23 C -0.178 4.178 24 C -0.030 4.030 25 H 0.100 0.900 26 C -0.235 4.235 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.072 0.928 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.650 -3.270 -8.502 9.813 hybrid contribution -0.303 0.179 0.942 1.005 sum 3.347 -3.090 -7.560 8.827 Atomic orbital electron populations 1.21707 0.96392 1.01035 1.01387 1.21774 0.94808 0.98085 1.02290 1.21637 0.82899 0.96532 1.01058 1.43772 1.03653 1.66500 1.05723 1.19004 1.10621 1.29102 0.87776 0.88018 1.25289 0.97118 0.96834 0.94784 1.69726 1.43549 1.38409 0.98501 0.86960 0.80995 0.82356 0.79057 1.20183 1.21813 1.18615 1.20012 0.88825 0.78803 0.83488 1.90550 1.69945 1.53884 1.31730 1.21591 0.93936 0.97862 0.90380 0.91050 1.21903 0.99417 0.95560 1.02974 1.63481 1.11232 1.16617 1.31308 1.22519 0.88375 0.95368 0.97714 0.92899 1.21914 0.99646 0.97067 1.01206 1.22718 0.98596 0.94701 1.00133 1.22904 0.96000 0.97942 1.00909 1.22293 0.95711 0.86813 0.98222 0.89989 1.22546 1.02408 1.01026 0.97553 0.93026 0.93044 0.93019 0.92246 0.91278 0.91442 0.91875 0.91595 0.92283 0.90281 0.92662 0.91772 0.93178 0.92100 0.91381 0.90845 0.91569 0.91272 0.90355 0.92832 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.91 37.16 0.37 -1.99 16 2 C -0.13 -2.54 6.26 -26.73 -0.17 -2.71 16 3 C 0.10 2.27 4.18 -4.04 -0.02 2.25 16 4 N -0.47 -11.20 2.03 -114.81 -0.23 -11.43 16 5 C -0.34 -8.48 8.18 -14.94 -0.12 -8.60 16 6 H 0.10 2.68 6.68 -52.49 -0.35 2.32 16 7 C 0.07 1.71 5.36 -17.47 -0.09 1.62 16 8 N -0.87 -23.45 13.96 55.50 0.77 -22.68 16 9 Si 0.88 20.59 24.88 -169.99 -4.23 16.36 16 10 H -0.27 -6.21 6.61 56.52 0.37 -5.84 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.50 11.53 3.79 -10.98 -0.04 11.48 16 14 O -0.58 -14.65 15.92 5.54 0.09 -14.56 16 15 C 0.07 1.46 1.21 -68.86 -0.08 1.38 16 16 H 0.07 1.48 4.30 -51.93 -0.22 1.25 16 17 C -0.14 -2.64 7.53 37.16 0.28 -2.36 16 18 N -0.50 -8.98 4.32 -209.04 -0.90 -9.89 16 19 C 0.07 1.00 2.38 -66.19 -0.16 0.85 16 20 H 0.05 0.79 6.95 -51.93 -0.36 0.43 16 21 C -0.14 -1.88 9.12 37.16 0.34 -1.54 16 22 C -0.12 -1.53 6.50 -24.59 -0.16 -1.69 16 23 C -0.14 -1.82 6.47 -24.91 -0.16 -1.98 16 24 C 0.08 1.29 3.64 -66.72 -0.24 1.05 16 25 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 26 C -0.18 -3.11 7.74 37.16 0.29 -2.82 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.17 7.89 -51.93 -0.41 0.76 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.07 1.52 7.39 -51.92 -0.38 1.14 16 33 H 0.06 1.45 2.97 -51.93 -0.15 1.29 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.06 1.11 7.26 -51.93 -0.38 0.73 16 36 H 0.08 1.62 7.18 -51.93 -0.37 1.25 16 37 H 0.05 0.89 5.86 -51.93 -0.30 0.58 16 38 H 0.06 0.90 5.23 -51.93 -0.27 0.63 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 43 H 0.07 0.85 7.85 -51.92 -0.41 0.44 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.08 1.61 4.59 -51.93 -0.24 1.37 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.06 1.05 6.49 -51.93 -0.34 0.71 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -28.21 342.60 -7.31 -35.52 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -8.00 Total: 6.57 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 0.03 Total: -5.06 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.36 Total: -44.00 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.09 Total: -14.56 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.23 Total: 16.36 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.21 -7.31 -35.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413199271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.672 kcal (2) G-P(sol) polarization free energy of solvation -28.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds