Wall clock time and date at job start Tue Mar 31 2020 06:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46945 * 2 1 4 4 N 1.46498 * 109.47153 * 179.97438 * 3 2 1 5 5 C 1.37094 * 120.00101 * 269.01506 * 4 3 2 6 6 H 1.08000 * 120.00167 * 142.19498 * 5 4 3 7 7 C 1.38949 * 119.99736 * 322.18774 * 5 4 3 8 8 N 1.31410 * 119.99723 * 161.52986 * 7 5 4 9 9 Si 1.86802 * 120.00347 * 341.52744 * 7 5 4 10 10 H 1.48495 * 109.47025 * 92.73959 * 9 7 5 11 11 H 1.48496 * 109.47089 * 212.73658 * 9 7 5 12 12 H 1.48496 * 109.46965 * 332.73729 * 9 7 5 13 13 C 1.34782 * 119.99817 * 89.01199 * 4 3 2 14 14 O 1.21296 * 119.99938 * 5.30231 * 13 4 3 15 15 C 1.50697 * 119.99783 * 185.30198 * 13 4 3 16 16 H 1.09000 * 109.47734 * 38.38351 * 15 13 4 17 17 C 1.53006 * 109.47177 * 278.37927 * 15 13 4 18 18 N 1.46901 * 109.47035 * 158.38585 * 15 13 4 19 19 C 1.47848 * 111.00126 * 168.17495 * 18 15 13 20 20 H 1.09000 * 110.37073 * 27.53501 * 19 18 15 21 21 C 1.52996 * 110.37231 * 265.19113 * 19 18 15 22 22 C 1.54909 * 104.79704 * 146.36112 * 19 18 15 23 23 C 1.55138 * 101.65273 * 322.93283 * 22 19 18 24 24 C 1.47440 * 111.00023 * 289.01774 * 18 15 13 25 25 H 1.08998 * 109.88920 * 117.17285 * 24 18 15 26 26 C 1.53003 * 109.88529 * 356.14693 * 24 18 15 27 27 H 1.08999 * 109.47368 * 60.00240 * 1 2 3 28 28 H 1.09002 * 109.47127 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47417 * 299.99595 * 1 2 3 30 30 H 1.09005 * 109.46994 * 240.00059 * 2 1 3 31 31 H 1.08999 * 109.46911 * 120.00036 * 2 1 3 32 32 H 1.09008 * 109.47399 * 299.99866 * 3 2 1 33 33 H 1.09005 * 109.47226 * 60.00201 * 3 2 1 34 34 H 0.97008 * 120.00340 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47457 * 296.76847 * 17 15 13 36 36 H 1.09002 * 109.46435 * 56.76482 * 17 15 13 37 37 H 1.08998 * 109.47460 * 176.75957 * 17 15 13 38 38 H 1.09001 * 109.47249 * 66.27083 * 21 19 18 39 39 H 1.08997 * 109.47241 * 186.26791 * 21 19 18 40 40 H 1.09002 * 109.47204 * 306.26688 * 21 19 18 41 41 H 1.08994 * 110.98868 * 204.84233 * 22 19 18 42 42 H 1.09000 * 110.98924 * 81.02263 * 22 19 18 43 43 H 1.09010 * 110.70345 * 277.27237 * 23 22 19 44 44 H 1.08999 * 110.71048 * 154.03563 * 23 22 19 45 45 H 1.09002 * 109.47109 * 61.12787 * 26 24 18 46 46 H 1.09000 * 109.47134 * 181.12212 * 26 24 18 47 47 H 1.08995 * 109.47728 * 301.12684 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.4631 1.1880 6 1 5.0999 0.8917 1.2965 7 6 3.7135 2.2194 2.2518 8 7 4.1332 1.9737 3.4726 9 14 2.4765 3.5855 1.9467 10 1 1.1001 3.0521 2.1084 11 1 2.7000 4.6826 2.9222 12 1 2.6461 4.1077 0.5670 13 6 4.1793 1.4223 -1.1662 14 8 3.5771 1.5011 -2.2162 15 6 5.6815 1.3017 -1.1662 16 1 5.9909 0.6136 -0.3795 17 6 6.3035 2.6768 -0.9149 18 7 6.1317 0.7913 -2.4681 19 6 7.5973 0.9235 -2.6110 20 1 8.0779 0.8962 -1.6330 21 6 7.9462 2.2218 -3.3414 22 6 8.0246 -0.3024 -3.4562 23 6 7.0750 -1.4030 -2.9142 24 6 5.7701 -0.6286 -2.6327 25 1 5.0813 -0.7412 -3.4698 26 6 5.1205 -1.1522 -1.3502 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.8004 2.5014 4.2154 35 1 6.0412 3.3491 -1.7317 36 1 5.9247 3.0807 0.0240 37 1 7.3877 2.5802 -0.8576 38 1 7.6663 3.0738 -2.7218 39 1 9.0180 2.2517 -3.5373 40 1 7.4030 2.2649 -4.2854 41 1 9.0672 -0.5602 -3.2706 42 1 7.8508 -0.1246 -4.5174 43 1 7.4717 -1.8364 -1.9960 44 1 6.9105 -2.1747 -3.6662 45 1 4.2104 -0.5878 -1.1473 46 1 4.8742 -2.2070 -1.4722 47 1 5.8140 -1.0350 -0.5175 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413199271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:27 Heat of formation + Delta-G solvation = -31.717301 kcal Electronic energy + Delta-G solvation = -24948.190746 eV Core-core repulsion = 21744.981265 eV Total energy + Delta-G solvation = -3203.209480 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71825 -39.77407 -37.05040 -34.96915 -34.21892 -33.81061 -33.27165 -29.75438 -29.01617 -27.70109 -26.90633 -25.20123 -24.03924 -22.70529 -21.81410 -20.92538 -20.10503 -18.54184 -18.22480 -17.38842 -17.05671 -16.48101 -16.20390 -15.78254 -15.73910 -14.90841 -14.79918 -14.54214 -14.29682 -14.14716 -14.02769 -13.68557 -13.40552 -13.38445 -13.18947 -13.05238 -12.87948 -12.65646 -12.58414 -12.49385 -12.31819 -12.17437 -12.12811 -11.90843 -11.87834 -11.59459 -11.54307 -11.50226 -11.36858 -10.98861 -10.31101 -9.68874 -9.05868 -8.48099 -6.09698 1.15662 1.29450 1.39617 1.94624 2.17092 2.47100 2.94819 3.16294 3.68099 3.79868 3.92307 3.98010 4.10680 4.16209 4.19777 4.28966 4.36819 4.39077 4.43757 4.46854 4.52082 4.55903 4.63868 4.68358 4.80863 4.84229 4.89466 4.91804 4.95629 4.99400 5.03444 5.06223 5.16993 5.17953 5.19068 5.23347 5.30892 5.37454 5.44953 5.52154 5.53752 6.02949 6.16331 6.27958 6.30431 6.99781 7.47950 7.84990 8.65582 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018741 B = 0.006747 C = 0.005816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.657987 B = 4148.787047 C = 4813.386073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.095 3.905 4 N -0.483 5.483 5 C -0.325 4.325 6 H 0.084 0.916 7 C 0.033 3.967 8 N -0.899 5.899 9 Si 0.921 3.079 10 H -0.259 1.259 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.499 3.501 14 O -0.604 6.604 15 C 0.081 3.919 16 H 0.062 0.938 17 C -0.133 4.133 18 N -0.517 5.517 19 C 0.061 3.939 20 H 0.052 0.948 21 C -0.137 4.137 22 C -0.114 4.114 23 C -0.130 4.130 24 C 0.073 3.927 25 H 0.066 0.934 26 C -0.170 4.170 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.278 0.722 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.917 -4.271 -8.867 11.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.028 4.028 4 N -0.205 5.205 5 C -0.453 4.453 6 H 0.101 0.899 7 C -0.171 4.171 8 N -0.536 5.536 9 Si 0.748 3.252 10 H -0.185 1.185 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.290 3.710 14 O -0.488 6.488 15 C -0.030 4.030 16 H 0.079 0.921 17 C -0.190 4.190 18 N -0.243 5.243 19 C -0.047 4.047 20 H 0.070 0.930 21 C -0.194 4.194 22 C -0.152 4.152 23 C -0.168 4.168 24 C -0.035 4.035 25 H 0.084 0.916 26 C -0.228 4.228 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.351 -3.873 -9.543 11.180 hybrid contribution -0.499 0.330 1.202 1.343 sum 3.852 -3.543 -8.340 9.846 Atomic orbital electron populations 1.21681 0.93400 1.02899 1.01953 1.21678 0.97368 0.95773 1.01277 1.21759 0.82282 0.98352 1.00375 1.43882 1.04336 1.66765 1.05491 1.18830 1.10035 1.28303 0.88148 0.89852 1.25708 0.98640 0.98152 0.94577 1.69778 1.45182 1.39544 0.99138 0.86267 0.80382 0.80477 0.78056 1.18510 1.21348 1.19992 1.20555 0.90201 0.77478 0.82783 1.90517 1.70865 1.55021 1.32438 1.21436 0.91750 0.98351 0.91472 0.92059 1.21845 1.01042 0.94676 1.01474 1.63460 1.13680 1.17521 1.29598 1.22715 0.86226 0.97303 0.98453 0.92959 1.21885 1.01384 0.95900 1.00270 1.22716 0.99800 0.92807 0.99843 1.22850 0.93913 0.98228 1.01857 1.22317 0.97381 0.86907 0.96890 0.91608 1.22449 1.00703 1.01718 0.97951 0.92208 0.90585 0.92687 0.92975 0.92487 0.92042 0.92377 0.91232 0.92549 0.92611 0.89860 0.92857 0.90286 0.92949 0.88659 0.90304 0.91039 0.89269 0.93679 0.90951 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.91 71.98 0.71 -3.59 16 2 C -0.12 -4.74 6.26 30.59 0.19 -4.55 16 3 C 0.09 4.27 4.18 86.38 0.36 4.63 16 4 N -0.48 -23.30 2.03 -635.53 -1.29 -24.59 16 5 C -0.33 -16.74 8.18 84.04 0.69 -16.05 16 6 H 0.08 4.55 6.68 -2.91 -0.02 4.53 16 7 C 0.03 1.72 5.36 84.93 0.46 2.18 16 8 N -0.90 -49.24 13.96 21.66 0.30 -48.93 16 9 Si 0.92 42.51 24.88 68.60 1.71 44.22 16 10 H -0.26 -11.22 6.61 99.48 0.66 -10.56 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 13 C 0.50 23.55 3.79 87.66 0.33 23.89 16 14 O -0.60 -31.21 15.92 -3.08 -0.05 -31.26 16 15 C 0.08 3.28 1.21 44.17 0.05 3.33 16 16 H 0.06 2.60 4.30 -2.39 -0.01 2.59 16 17 C -0.13 -4.99 7.53 71.98 0.54 -4.45 16 18 N -0.52 -18.24 4.32 -815.27 -3.52 -21.76 16 19 C 0.06 1.65 2.38 45.38 0.11 1.76 16 20 H 0.05 1.44 6.95 -2.39 -0.02 1.43 16 21 C -0.14 -3.36 9.12 71.98 0.66 -2.70 16 22 C -0.11 -2.44 6.50 31.98 0.21 -2.23 16 23 C -0.13 -3.07 6.47 31.77 0.21 -2.86 16 24 C 0.07 2.38 3.64 45.26 0.16 2.55 16 25 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 26 C -0.17 -5.99 7.74 71.98 0.56 -5.44 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 2.07 7.89 -2.38 -0.02 2.05 16 31 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 2.80 7.39 -2.38 -0.02 2.79 16 33 H 0.06 2.65 2.97 -2.38 -0.01 2.64 16 34 H 0.28 14.29 8.31 -92.70 -0.77 13.52 16 35 H 0.06 2.12 7.26 -2.39 -0.02 2.10 16 36 H 0.05 2.33 7.18 -2.39 -0.02 2.31 16 37 H 0.08 2.61 5.86 -2.39 -0.01 2.59 16 38 H 0.05 1.41 5.23 -2.39 -0.01 1.40 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.63 8.06 -2.39 -0.02 1.61 16 43 H 0.07 1.63 7.85 -2.38 -0.02 1.61 16 44 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.04 1.89 4.59 -2.39 -0.01 1.88 16 46 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.05 1.88 6.49 -2.39 -0.02 1.86 16 Total: -1.00 -61.38 342.60 3.27 -58.10 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.89 Total: 27.76 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 5.24 Total: -3.53 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -4.51 Total: -95.29 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.05 Total: -31.26 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.71 Total: 44.22 kcal Total: -61.38 3.27 -58.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413199271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.386 kcal (2) G-P(sol) polarization free energy of solvation -61.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds