Wall clock time and date at job start Tue Mar 31 2020 06:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47262 * 2 1 4 4 N 1.46498 * 109.47077 * 185.42235 * 3 2 1 5 5 C 1.37098 * 119.99964 * 84.43232 * 4 3 2 6 6 H 1.08001 * 119.99711 * 169.30866 * 5 4 3 7 7 C 1.38948 * 120.00256 * 349.30739 * 5 4 3 8 8 N 1.31411 * 119.99844 * 1.92069 * 7 5 4 9 9 Si 1.86797 * 119.99918 * 181.91719 * 7 5 4 10 10 H 1.48497 * 109.47485 * 60.00265 * 9 7 5 11 11 H 1.48501 * 109.47168 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47520 * 299.99761 * 9 7 5 13 13 C 1.34773 * 119.99654 * 264.43585 * 4 3 2 14 14 O 1.21301 * 119.99850 * 185.27695 * 13 4 3 15 15 C 1.50699 * 120.00396 * 5.27535 * 13 4 3 16 16 H 1.08998 * 109.46678 * 30.72352 * 15 13 4 17 17 C 1.52994 * 109.47397 * 270.72219 * 15 13 4 18 18 N 1.46904 * 109.46916 * 150.72091 * 15 13 4 19 19 C 1.48811 * 111.18359 * 309.16436 * 18 15 13 20 20 H 1.08997 * 110.52110 * 41.08269 * 19 18 15 21 21 C 1.53002 * 110.84466 * 278.09244 * 19 18 15 22 22 C 1.54942 * 103.34635 * 159.51070 * 19 18 15 23 23 C 1.54602 * 102.92085 * 322.69270 * 22 19 18 24 24 C 1.47891 * 111.00162 * 66.50629 * 18 15 13 25 25 H 1.09000 * 109.91823 * 333.70105 * 24 18 15 26 26 C 1.52997 * 109.91806 * 94.79820 * 24 18 15 27 27 H 1.08997 * 109.47450 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47267 * 300.00554 * 1 2 3 29 29 H 1.08997 * 109.46984 * 59.99791 * 1 2 3 30 30 H 1.09003 * 109.46543 * 239.99481 * 2 1 3 31 31 H 1.09003 * 109.46615 * 120.00078 * 2 1 3 32 32 H 1.08996 * 109.47238 * 65.41936 * 3 2 1 33 33 H 1.08997 * 109.46955 * 305.42037 * 3 2 1 34 34 H 0.96999 * 119.99697 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47393 * 65.36574 * 17 15 13 36 36 H 1.08998 * 109.47420 * 185.37027 * 17 15 13 37 37 H 1.09001 * 109.47055 * 305.37473 * 17 15 13 38 38 H 1.08998 * 109.46973 * 300.34048 * 21 19 18 39 39 H 1.08998 * 109.47151 * 60.34104 * 21 19 18 40 40 H 1.08994 * 109.47209 * 180.34063 * 21 19 18 41 41 H 1.08996 * 110.72487 * 204.33850 * 22 19 18 42 42 H 1.09001 * 110.87878 * 81.11855 * 22 19 18 43 43 H 1.09005 * 110.30729 * 263.04811 * 23 22 19 44 44 H 1.08991 * 110.31117 * 140.87466 * 23 22 19 45 45 H 1.09008 * 109.47153 * 179.59542 * 26 24 18 46 46 H 1.09007 * 109.47333 * 59.60116 * 26 24 18 47 47 H 1.08998 * 109.47689 * 299.60083 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.4992 1.4445 -0.1305 5 6 4.0765 1.3675 -1.3716 6 1 5.1363 1.5416 -1.4859 7 6 3.2983 1.0655 -2.4824 8 7 2.0027 0.8909 -2.3491 9 14 4.0937 0.9079 -4.1652 10 1 5.1090 -0.1754 -4.1334 11 1 3.0547 0.5836 -5.1754 12 1 4.7497 2.1907 -4.5249 13 6 4.2740 1.5219 0.9695 14 8 5.4778 1.6201 0.8578 15 6 3.6448 1.4865 2.3384 16 1 2.7370 0.8842 2.3055 17 6 3.2965 2.9104 2.7767 18 7 4.5894 0.8966 3.2964 19 6 5.1237 -0.3992 2.7962 20 1 5.3429 -0.3362 1.7304 21 6 4.1414 -1.5380 3.0774 22 6 6.4272 -0.5875 3.6123 23 6 6.9839 0.8514 3.7116 24 6 5.7685 1.7694 3.4841 25 1 5.9249 2.3787 2.5940 26 6 5.5609 2.6709 4.7027 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7582 1.9275 0.9345 33 1 1.5996 1.9835 -0.8375 34 1 1.4595 0.6797 -3.1244 35 1 2.5247 3.3139 2.1211 36 1 2.9300 2.8953 3.8031 37 1 4.1868 3.5366 2.7179 38 1 3.9711 -1.6141 4.1513 39 1 3.1965 -1.3356 2.5731 40 1 4.5567 -2.4756 2.7081 41 1 7.1247 -1.2350 3.0811 42 1 6.2109 -0.9865 4.6033 43 1 7.7352 1.0205 2.9401 44 1 7.4095 1.0251 4.6998 45 1 6.4367 3.3056 4.8385 46 1 5.4178 2.0547 5.5904 47 1 4.6806 3.2946 4.5476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413199275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:31 Heat of formation + Delta-G solvation = -16.833276 kcal Electronic energy + Delta-G solvation = -25095.476543 eV Core-core repulsion = 21892.912482 eV Total energy + Delta-G solvation = -3202.564061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.02783 -37.65536 -35.28033 -33.21250 -32.27311 -31.85325 -31.30776 -28.38205 -27.86643 -25.89330 -24.66965 -23.51729 -22.58628 -20.54733 -20.20009 -19.78168 -18.26691 -16.95623 -16.41810 -15.67538 -14.69697 -14.48916 -14.23216 -13.98829 -13.74781 -13.63282 -13.16228 -13.00358 -12.77978 -12.43038 -12.25867 -11.90272 -11.87476 -11.72614 -11.53178 -11.47814 -11.14334 -11.03634 -10.99349 -10.75111 -10.65662 -10.48825 -10.29677 -10.27976 -10.19940 -10.11973 -9.98798 -9.85530 -9.73525 -8.99524 -8.74255 -7.68613 -7.38840 -6.17760 -3.83616 3.15563 3.22192 3.26256 3.83805 4.10547 4.45742 4.88737 5.08425 5.09992 5.21063 5.42462 5.62802 5.65471 5.72136 5.78648 5.88151 5.93063 5.96875 6.01257 6.05826 6.09805 6.11574 6.12399 6.16591 6.29129 6.30114 6.38651 6.40577 6.45934 6.47431 6.48792 6.55198 6.68248 6.78718 6.79431 6.93858 6.96900 7.05184 7.41534 7.49586 7.60297 7.63075 7.77954 8.09670 8.53455 9.17863 9.46003 9.97872 10.67037 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.006417 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.062738 B = 4362.484300 C = 4780.671770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C 0.124 3.876 4 N -0.440 5.440 5 C -0.295 4.295 6 H 0.099 0.901 7 C 0.024 3.976 8 N -0.877 5.877 9 Si 0.928 3.072 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.276 1.276 13 C 0.420 3.580 14 O -0.593 6.593 15 C 0.060 3.940 16 H 0.092 0.908 17 C -0.139 4.139 18 N -0.486 5.486 19 C 0.052 3.948 20 H 0.078 0.922 21 C -0.133 4.133 22 C -0.113 4.113 23 C -0.117 4.117 24 C 0.049 3.951 25 H 0.093 0.907 26 C -0.141 4.141 27 H 0.035 0.965 28 H 0.033 0.967 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.019 0.981 32 H 0.028 0.972 33 H 0.116 0.884 34 H 0.264 0.736 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.051 0.949 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 -0.768 9.265 9.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.151 4.151 3 C 0.001 3.999 4 N -0.157 5.157 5 C -0.423 4.423 6 H 0.117 0.883 7 C -0.177 4.177 8 N -0.519 5.519 9 Si 0.756 3.244 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.201 1.201 13 C 0.208 3.792 14 O -0.479 6.479 15 C -0.053 4.053 16 H 0.110 0.890 17 C -0.197 4.197 18 N -0.210 5.210 19 C -0.056 4.056 20 H 0.095 0.905 21 C -0.191 4.191 22 C -0.151 4.151 23 C -0.156 4.156 24 C -0.059 4.059 25 H 0.110 0.890 26 C -0.199 4.199 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.134 0.866 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.121 -0.817 9.526 9.562 hybrid contribution 0.503 -0.076 -1.693 1.768 sum 0.382 -0.893 7.833 7.893 Atomic orbital electron populations 1.21557 0.97373 0.99615 1.00584 1.21892 0.94111 0.98175 1.00896 1.21811 0.80746 0.97449 0.99879 1.43972 1.05528 1.61011 1.05215 1.19731 0.95384 1.44288 0.82875 0.88276 1.25246 0.95601 0.97003 0.99850 1.70151 1.04099 1.47724 1.29878 0.85958 0.78447 0.78873 0.81161 1.20134 1.20942 1.20129 1.20897 0.87606 0.84412 0.86333 1.90443 1.14659 1.56505 1.86330 1.21775 0.96787 0.96984 0.89714 0.89031 1.21924 1.01636 0.94979 1.01181 1.65142 1.13060 1.02718 1.40061 1.22913 0.93437 0.89660 0.99575 0.90462 1.21663 0.99187 0.96903 1.01299 1.22423 0.96405 0.96694 0.99606 1.22315 0.97689 0.94868 1.00684 1.22540 0.89192 0.95184 0.98999 0.88964 1.22021 1.00976 0.98910 0.97954 0.94597 0.94785 0.92286 0.88617 0.96235 0.95425 0.86628 0.92475 0.92190 0.91693 0.92117 0.92619 0.92761 0.92901 0.91972 0.91695 0.91833 0.92206 0.93430 0.93008 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.91 37.16 0.37 -1.97 16 2 C -0.11 -2.33 5.27 -26.73 -0.14 -2.47 16 3 C 0.12 2.73 4.26 -4.04 -0.02 2.71 16 4 N -0.44 -10.86 2.63 -114.82 -0.30 -11.17 16 5 C -0.29 -7.92 9.51 -14.93 -0.14 -8.06 16 6 H 0.10 2.84 7.20 -52.49 -0.38 2.46 16 7 C 0.02 0.60 5.24 -17.47 -0.09 0.51 16 8 N -0.88 -21.36 7.29 55.50 0.40 -20.96 16 9 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.42 9.86 5.35 -10.99 -0.06 9.80 16 14 O -0.59 -15.45 12.10 5.54 0.07 -15.39 16 15 C 0.06 1.15 2.02 -68.87 -0.14 1.01 16 16 H 0.09 1.77 5.56 -51.93 -0.29 1.48 16 17 C -0.14 -2.34 7.47 37.15 0.28 -2.06 16 18 N -0.49 -8.72 4.74 -208.10 -0.99 -9.71 16 19 C 0.05 0.95 2.56 -65.63 -0.17 0.78 16 20 H 0.08 1.73 5.59 -51.93 -0.29 1.44 16 21 C -0.13 -2.12 9.52 37.16 0.35 -1.76 16 22 C -0.11 -1.77 6.50 -24.86 -0.16 -1.93 16 23 C -0.12 -1.87 6.57 -25.37 -0.17 -2.04 16 24 C 0.05 0.85 1.83 -66.65 -0.12 0.73 16 25 H 0.09 1.93 4.81 -51.93 -0.25 1.68 16 26 C -0.14 -2.03 8.89 37.16 0.33 -1.70 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 2.29 6.06 -51.93 -0.31 1.97 16 31 H 0.02 0.39 6.93 -51.93 -0.36 0.03 16 32 H 0.03 0.55 5.14 -51.93 -0.27 0.28 16 33 H 0.12 2.77 5.93 -51.93 -0.31 2.46 16 34 H 0.26 6.22 8.31 -40.82 -0.34 5.88 16 35 H 0.06 0.99 6.91 -51.93 -0.36 0.63 16 36 H 0.06 0.95 7.37 -51.93 -0.38 0.57 16 37 H 0.06 1.05 6.05 -51.93 -0.31 0.74 16 38 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 39 H 0.05 0.92 7.23 -51.93 -0.38 0.54 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.92 8.04 -51.93 -0.42 0.50 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16 45 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.83 5.10 -51.93 -0.26 0.57 16 LS Contribution 339.67 15.07 5.12 5.12 Total: -1.00 -26.91 339.67 -8.51 -35.41 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.91 Total: 7.74 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 0.12 Total: -6.44 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.88 Total: -41.83 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.07 Total: -15.39 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.91 -8.51 -35.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413199275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.578 kcal (2) G-P(sol) polarization free energy of solvation -26.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds