Wall clock time and date at job start Tue Mar 31 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 H 1.08998 * 109.46864 * 55.00275 * 3 2 1 5 5 N 1.46501 * 109.47012 * 295.00391 * 3 2 1 6 6 C 1.34767 * 120.00226 * 108.13923 * 5 3 2 7 7 O 1.21587 * 119.99967 * 359.97438 * 6 5 3 8 8 N 1.34781 * 120.00197 * 179.97438 * 6 5 3 9 9 C 1.46500 * 119.99894 * 180.27325 * 8 6 5 10 10 C 1.52999 * 109.46932 * 179.72245 * 9 8 6 11 11 C 1.53001 * 109.46901 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.46928 * 179.97438 * 11 10 9 13 13 H 1.07997 * 119.99878 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00034 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99858 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00038 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47132 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46894 * 119.99798 * 16 14 12 19 19 H 1.48497 * 109.47046 * 239.99770 * 16 14 12 20 20 C 1.52994 * 109.46695 * 175.00317 * 3 2 1 21 21 H 1.09005 * 115.55514 * 331.45424 * 20 3 2 22 22 C 1.53003 * 117.49957 * 117.16822 * 20 3 2 23 23 C 1.52994 * 60.00089 * 107.48601 * 22 20 3 24 24 C 1.53004 * 117.49878 * 252.50917 * 23 22 20 25 25 C 1.52998 * 117.49892 * 107.49277 * 23 22 20 26 26 H 1.08996 * 109.47458 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46738 * 299.99741 * 1 2 3 28 28 H 1.08999 * 109.47572 * 59.99666 * 1 2 3 29 29 H 1.09000 * 109.46526 * 240.00031 * 2 1 3 30 30 H 1.08994 * 109.46913 * 120.00092 * 2 1 3 31 31 H 0.97006 * 119.99606 * 288.12780 * 5 3 2 32 32 H 0.96997 * 119.99620 * 359.97438 * 8 6 5 33 33 H 1.08998 * 109.47124 * 299.72597 * 9 8 6 34 34 H 1.09007 * 109.47208 * 59.72162 * 9 8 6 35 35 H 1.08997 * 109.46726 * 299.99621 * 10 9 8 36 36 H 1.08995 * 109.47102 * 60.00338 * 10 9 8 37 37 H 1.09000 * 109.47655 * 300.00076 * 11 10 9 38 38 H 1.09007 * 109.47109 * 59.99997 * 11 10 9 39 39 H 0.97000 * 119.99917 * 180.02562 * 15 14 12 40 40 H 1.09005 * 117.49544 * 214.97628 * 22 20 3 41 41 H 1.08998 * 117.49619 * 359.97438 * 22 20 3 42 42 H 1.08996 * 109.47119 * 128.62513 * 24 23 22 43 43 H 1.09001 * 109.47258 * 248.62865 * 24 23 22 44 44 H 1.09003 * 109.47045 * 8.62397 * 24 23 22 45 45 H 1.09000 * 109.47210 * 351.37479 * 25 23 22 46 46 H 1.09007 * 109.47581 * 111.37739 * 25 23 22 47 47 H 1.09005 * 109.47100 * 231.37413 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6523 2.0975 -1.2518 6 6 0.6888 3.0398 -1.2490 7 8 0.1409 3.3459 -0.2077 8 7 0.3325 3.6427 -2.4006 9 6 -0.7107 4.6712 -2.3966 10 6 -0.9163 5.1946 -3.8195 11 6 -2.0062 6.2683 -3.8154 12 6 -2.2083 6.7843 -5.2169 13 1 -1.6186 6.3860 -6.0292 14 6 -3.1460 7.7650 -5.4620 15 7 -3.8638 8.2505 -4.4726 16 14 -3.3969 8.4041 -7.1992 17 1 -2.4730 7.6997 -8.1240 18 1 -4.7998 8.1579 -7.6193 19 1 -3.1180 9.8622 -7.2354 20 6 3.5648 1.4442 0.1256 21 1 3.9937 0.5949 0.6575 22 6 4.3688 2.0294 -1.0372 23 6 4.2593 2.7987 0.2808 24 6 3.3758 4.0477 0.2984 25 6 5.5029 2.8572 1.1700 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.0894 1.8531 -2.0826 32 1 0.7699 3.3987 -3.2313 33 1 -1.6428 4.2419 -2.0291 34 1 -0.4083 5.4930 -1.7473 35 1 0.0158 5.6240 -4.1868 36 1 -1.2187 4.3730 -4.4687 37 1 -2.9382 5.8387 -3.4482 38 1 -1.7043 7.0902 -3.1660 39 1 -4.5237 8.9401 -4.6451 40 1 5.3269 1.5649 -1.2706 41 1 3.8114 2.4127 -1.8918 42 1 2.6758 3.9859 1.1315 43 1 4.0007 4.9333 0.4138 44 1 2.8214 4.1139 -0.6378 45 1 6.2651 2.1865 0.7734 46 1 5.8893 3.8764 1.1878 47 1 5.2403 2.5506 2.1826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416677854.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:28 Heat of formation + Delta-G solvation = -36.237967 kcal Electronic energy + Delta-G solvation = -22662.804169 eV Core-core repulsion = 19459.398658 eV Total energy + Delta-G solvation = -3203.405511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.49861 -38.60209 -35.70461 -34.88844 -33.34155 -32.32574 -30.88445 -29.57667 -27.69347 -27.00709 -26.15067 -23.13930 -22.26173 -21.10567 -20.55815 -20.04655 -19.16281 -17.99512 -16.50764 -16.05027 -15.92456 -15.08908 -14.80394 -14.62178 -14.41672 -14.07444 -13.96238 -13.75348 -13.55628 -13.26413 -12.63391 -12.36707 -12.27848 -12.23563 -11.98749 -11.79193 -11.74892 -11.45366 -11.41823 -11.20351 -10.99984 -10.91128 -10.70829 -10.55574 -10.25520 -9.90697 -9.84879 -9.69987 -9.42000 -9.09985 -9.07053 -8.56225 -8.36632 -6.01123 -4.04055 2.85638 3.30292 3.37785 3.41259 3.41871 3.49590 4.26150 4.40663 4.47188 4.55313 4.63877 4.89413 4.93211 5.00321 5.07244 5.34702 5.34723 5.44173 5.46209 5.58037 5.63333 5.65908 5.73964 5.75632 5.83735 5.83839 5.85045 5.88398 5.91044 6.03642 6.04481 6.20926 6.24630 6.28389 6.57340 6.60316 6.64483 6.84339 7.04624 7.13945 7.65205 7.78011 7.98089 8.20859 8.39119 8.82519 9.02944 9.60091 11.10214 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024339 B = 0.002939 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.118841 B = 9523.162550 C =10072.062705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.188 3.812 4 H 0.104 0.896 5 N -0.743 5.743 6 C 0.702 3.298 7 O -0.590 6.590 8 N -0.744 5.744 9 C 0.136 3.864 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.893 5.893 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.160 4.160 21 H 0.111 0.889 22 C -0.170 4.170 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.114 4.114 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.392 0.608 32 H 0.392 0.608 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.260 0.740 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.732 -16.605 9.041 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.082 3.918 4 H 0.122 0.878 5 N -0.400 5.400 6 C 0.402 3.598 7 O -0.468 6.468 8 N -0.399 5.399 9 C 0.013 3.987 10 C -0.158 4.158 11 C -0.014 4.014 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.179 4.179 21 H 0.129 0.871 22 C -0.208 4.208 23 C -0.118 4.118 24 C -0.171 4.171 25 C -0.172 4.172 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.227 0.773 32 H 0.225 0.775 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.044 -16.162 10.053 25.550 hybrid contribution 0.220 0.136 -1.819 1.837 sum 17.264 -16.026 8.234 24.954 Atomic orbital electron populations 1.21689 0.95162 1.00923 1.02678 1.21887 0.96749 0.96068 1.02038 1.20311 0.91060 0.92785 0.87614 0.87779 1.45315 1.41329 1.42578 1.10761 1.15985 0.80050 0.79283 0.84496 1.90909 1.57428 1.67580 1.30879 1.45418 1.42953 1.43157 1.08322 1.21478 0.89011 0.88790 0.99409 1.21882 1.01242 1.00016 0.92667 1.19029 0.92560 0.92475 0.97310 1.21245 1.20218 1.20662 0.93832 0.92630 1.25035 0.95894 0.96575 0.97001 1.69980 1.23799 1.28479 1.31006 0.86533 0.77951 0.78695 0.84789 1.19772 1.21011 1.21004 1.22936 0.93905 0.97415 1.03629 0.87120 1.23222 1.01193 1.03960 0.92375 1.21565 0.98346 0.93134 0.98799 1.21356 0.98374 0.94564 1.02829 1.21357 0.95048 1.01988 0.98760 0.93181 0.92426 0.92685 0.91918 0.91214 0.77276 0.77502 0.92054 0.92057 0.92839 0.92837 0.96270 0.96269 0.92990 0.89036 0.88659 0.91933 0.92686 0.92058 0.92684 0.92119 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.72 37.16 0.36 -1.18 16 2 C -0.13 -1.10 5.56 -26.73 -0.15 -1.25 16 3 C 0.19 1.85 1.92 -67.93 -0.13 1.72 16 4 H 0.10 1.32 6.57 -51.93 -0.34 0.98 16 5 N -0.74 -7.76 2.75 -58.68 -0.16 -7.92 16 6 C 0.70 10.19 6.41 -86.92 -0.56 9.64 16 7 O -0.59 -10.94 15.71 5.29 0.08 -10.86 16 8 N -0.74 -10.63 5.56 -65.22 -0.36 -10.99 16 9 C 0.14 2.43 5.67 -4.04 -0.02 2.40 16 10 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 11 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 12 C -0.52 -14.60 9.11 -34.44 -0.31 -14.91 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 16 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C -0.16 -1.31 5.46 -90.62 -0.49 -1.80 16 21 H 0.11 0.78 8.07 -51.93 -0.42 0.36 16 22 C -0.17 -1.34 9.01 -26.73 -0.24 -1.58 16 23 C -0.12 -1.07 2.70 -154.51 -0.42 -1.48 16 24 C -0.11 -1.29 8.64 37.16 0.32 -0.97 16 25 C -0.11 -0.86 9.85 37.16 0.37 -0.50 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.68 8.14 -51.92 -0.42 0.25 16 28 H 0.05 0.68 7.29 -51.93 -0.38 0.30 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.39 3.24 7.16 -40.82 -0.29 2.95 16 32 H 0.39 4.52 8.49 -40.82 -0.35 4.17 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16 41 H 0.10 0.76 6.07 -51.93 -0.31 0.45 16 42 H 0.06 0.80 7.81 -51.93 -0.41 0.39 16 43 H 0.05 0.58 7.92 -51.93 -0.41 0.17 16 44 H 0.06 0.78 5.55 -51.93 -0.29 0.49 16 45 H 0.05 0.36 7.90 -51.93 -0.41 -0.05 16 46 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -31.76 372.32 -9.40 -41.16 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.63 Total: 3.09 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -1.65 Total: -10.43 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.21 Total: -45.08 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.76 -9.40 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416677854.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.923 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds