Wall clock time and date at job start Tue Mar 31 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47080 * 2 1 4 4 H 1.08995 * 109.47020 * 304.99293 * 3 2 1 5 5 N 1.46494 * 109.47220 * 64.99714 * 3 2 1 6 6 C 1.34776 * 119.99867 * 248.95397 * 5 3 2 7 7 O 1.21587 * 119.99899 * 0.02562 * 6 5 3 8 8 N 1.34779 * 119.99991 * 179.97438 * 6 5 3 9 9 C 1.46498 * 119.99954 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47161 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.47158 * 180.02562 * 10 9 8 12 12 C 1.50704 * 109.47075 * 180.02562 * 11 10 9 13 13 H 1.08004 * 120.00004 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00137 * 179.97438 * 12 11 10 15 15 N 1.31504 * 120.00213 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99749 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.46951 * 90.00112 * 16 14 12 18 18 H 1.48492 * 109.47112 * 209.99936 * 16 14 12 19 19 H 1.48504 * 109.47303 * 330.00309 * 16 14 12 20 20 C 1.53001 * 109.47055 * 184.99868 * 3 2 1 21 21 H 1.09002 * 115.54950 * 320.34505 * 20 3 2 22 22 C 1.52996 * 117.49832 * 174.68074 * 20 3 2 23 23 C 1.52995 * 117.50073 * 106.05433 * 20 3 2 24 24 C 1.53003 * 117.50206 * 214.97843 * 23 20 3 25 25 C 1.53004 * 117.49939 * 0.02562 * 23 20 3 26 26 H 1.08996 * 109.47440 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47216 * 60.00303 * 1 2 3 28 28 H 1.08997 * 109.47768 * 300.00647 * 1 2 3 29 29 H 1.09000 * 109.46829 * 119.99354 * 2 1 3 30 30 H 1.08997 * 109.47768 * 239.99353 * 2 1 3 31 31 H 0.97004 * 120.00169 * 68.95286 * 5 3 2 32 32 H 0.96995 * 120.00066 * 0.02562 * 8 6 5 33 33 H 1.09007 * 109.47509 * 300.00433 * 9 8 6 34 34 H 1.08999 * 109.47515 * 60.00445 * 9 8 6 35 35 H 1.08994 * 109.47299 * 299.99940 * 10 9 8 36 36 H 1.09003 * 109.47104 * 60.00378 * 10 9 8 37 37 H 1.09001 * 109.47317 * 299.99654 * 11 10 9 38 38 H 1.08995 * 109.47209 * 59.99907 * 11 10 9 39 39 H 0.96995 * 120.00255 * 180.02562 * 15 14 12 40 40 H 1.09002 * 117.49911 * 359.97438 * 22 20 3 41 41 H 1.09000 * 117.49946 * 145.01863 * 22 20 3 42 42 H 1.09005 * 109.46751 * 59.99635 * 24 23 20 43 43 H 1.08997 * 109.47564 * 180.02562 * 24 23 20 44 44 H 1.09001 * 109.46929 * 300.00144 * 24 23 20 45 45 H 1.09000 * 109.46990 * 59.99670 * 25 23 20 46 46 H 1.09000 * 109.47165 * 180.02562 * 25 23 20 47 47 H 1.08997 * 109.47039 * 300.00109 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6523 2.0975 1.2517 6 6 0.7307 3.0808 1.2404 7 8 0.2206 3.4239 0.1914 8 7 0.3737 3.6831 2.3921 9 6 -0.6278 4.7523 2.3798 10 6 -0.8478 5.2614 3.8056 11 6 -1.8942 6.3776 3.7928 12 6 -2.1105 6.8796 5.1973 13 1 -1.5573 6.4455 6.0170 14 6 -3.0146 7.8929 5.4357 15 7 -3.2030 8.3313 6.6611 16 14 -3.9709 8.6441 4.0177 17 1 -5.2386 7.8953 3.8239 18 1 -4.2768 10.0644 4.3243 19 1 -3.1575 8.5695 2.7775 20 6 3.5648 1.4444 -0.1257 21 1 4.0840 0.6699 0.4389 22 6 4.2601 2.7996 -0.2698 23 6 4.1622 1.8582 -1.4720 24 6 5.4429 1.1532 -1.9234 25 6 3.1890 2.2392 -2.5895 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8899 29 1 1.8932 -0.5137 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 2.0590 1.8236 2.0887 32 1 0.7803 3.4092 3.2290 33 1 -0.2771 5.5714 1.7519 34 1 -1.5666 4.3663 1.9825 35 1 -1.1984 4.4426 4.4338 36 1 0.0910 5.6476 4.2025 37 1 -1.5441 7.1967 3.1646 38 1 -2.8329 5.9911 3.3961 39 1 -3.8393 9.0439 6.8289 40 1 3.6312 3.6898 -0.2755 41 1 5.2369 2.9165 0.1996 42 1 5.2577 0.0822 -2.0074 43 1 5.7519 1.5459 -2.8920 44 1 6.2316 1.3292 -1.1920 45 1 2.5832 3.0872 -2.2703 46 1 3.7506 2.5094 -3.4838 47 1 2.5400 1.3919 -2.8107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416677856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:31 Heat of formation + Delta-G solvation = -40.290150 kcal Electronic energy + Delta-G solvation = -22345.294677 eV Core-core repulsion = 19141.713450 eV Total energy + Delta-G solvation = -3203.581227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.30060 -38.81057 -35.87820 -35.00598 -33.33983 -32.31116 -31.15605 -29.66341 -27.99607 -27.28912 -26.21526 -22.93314 -21.95238 -21.14719 -20.75210 -20.28392 -19.14229 -17.92558 -16.80593 -16.42000 -15.75028 -15.16674 -14.95966 -14.68812 -14.32952 -14.15642 -13.97390 -13.77464 -13.59478 -13.32737 -12.88370 -12.67949 -12.44062 -12.34972 -12.12055 -11.97678 -11.88773 -11.55985 -11.53680 -11.20578 -11.04357 -10.89360 -10.87569 -10.29452 -10.16543 -10.01207 -9.89727 -9.77441 -9.63110 -9.21424 -9.13149 -8.63173 -8.54433 -6.05355 -4.03913 2.73924 3.32429 3.35714 3.39891 3.44640 3.52398 4.20698 4.36029 4.45599 4.53114 4.58746 4.79571 4.90907 4.95465 5.02753 5.25578 5.28912 5.33146 5.37151 5.54964 5.58733 5.61500 5.62190 5.65636 5.68040 5.71651 5.72810 5.79758 5.85514 5.89334 6.03120 6.06711 6.11380 6.18665 6.42689 6.49370 6.55179 6.73227 6.85657 7.08181 7.25356 7.38562 7.77076 8.16589 8.51347 8.76531 8.98549 9.57042 11.07918 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027916 B = 0.002770 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.764795 B =10106.550056 C =10317.033799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.182 3.818 4 H 0.107 0.893 5 N -0.740 5.740 6 C 0.702 3.298 7 O -0.595 6.595 8 N -0.743 5.743 9 C 0.134 3.866 10 C -0.113 4.113 11 C -0.011 4.011 12 C -0.521 4.521 13 H 0.071 0.929 14 C 0.066 3.934 15 N -0.904 5.904 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.264 1.264 20 C -0.161 4.161 21 H 0.104 0.896 22 C -0.162 4.162 23 C -0.119 4.119 24 C -0.114 4.114 25 C -0.120 4.120 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.393 0.607 32 H 0.394 0.606 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.019 0.981 38 H 0.014 0.986 39 H 0.263 0.737 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.249 -18.150 -15.732 28.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.076 3.924 4 H 0.125 0.875 5 N -0.395 5.395 6 C 0.402 3.598 7 O -0.474 6.474 8 N -0.397 5.397 9 C 0.010 3.990 10 C -0.151 4.151 11 C -0.049 4.049 12 C -0.559 4.559 13 H 0.090 0.910 14 C -0.135 4.135 15 N -0.543 5.543 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.189 1.189 20 C -0.180 4.180 21 H 0.122 0.878 22 C -0.199 4.199 23 C -0.119 4.119 24 C -0.171 4.171 25 C -0.177 4.177 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.226 0.774 32 H 0.228 0.772 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.636 -17.668 -16.604 28.850 hybrid contribution -0.150 0.209 0.388 0.466 sum 15.487 -17.459 -16.215 28.418 Atomic orbital electron populations 1.21691 0.95219 1.01025 1.02579 1.21870 0.96659 0.96072 1.02117 1.20509 0.90969 0.93069 0.87834 0.87508 1.45093 1.44659 1.39384 1.10330 1.16009 0.79861 0.79433 0.84499 1.90893 1.58454 1.67637 1.30398 1.45336 1.45957 1.40441 1.07964 1.21485 0.90149 0.88032 0.99298 1.21699 1.00895 0.99666 0.92800 1.19500 0.93733 0.93481 0.98177 1.21103 1.23650 1.18899 0.92284 0.91037 1.25029 0.96589 0.96376 0.95514 1.69907 1.36007 1.28676 1.19665 0.86775 0.80684 0.78442 0.83406 1.20245 1.21393 1.18851 1.22806 0.95061 0.99293 1.00862 0.87775 1.23177 1.01708 0.93882 1.01099 1.21571 0.98041 1.02732 0.89587 1.21355 0.94641 0.99867 1.01252 1.21410 0.98010 1.01623 0.96675 0.93061 0.92537 0.92666 0.91958 0.91070 0.77378 0.77237 0.92093 0.92071 0.92208 0.92180 0.96306 0.96735 0.92712 0.88668 0.88934 0.92239 0.92060 0.92546 0.91800 0.92133 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.80 37.15 0.36 -1.12 16 2 C -0.13 -1.08 5.61 -26.73 -0.15 -1.23 16 3 C 0.18 1.76 2.27 -67.93 -0.15 1.61 16 4 H 0.11 1.31 4.88 -51.93 -0.25 1.06 16 5 N -0.74 -7.72 4.37 -58.68 -0.26 -7.97 16 6 C 0.70 10.17 8.24 -86.92 -0.72 9.45 16 7 O -0.60 -10.99 15.69 5.29 0.08 -10.91 16 8 N -0.74 -10.33 5.56 -65.23 -0.36 -10.70 16 9 C 0.13 2.26 5.67 -4.04 -0.02 2.24 16 10 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 11 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 12 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 13 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 16 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 20 C -0.16 -1.30 5.03 -90.62 -0.46 -1.76 16 21 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 22 C -0.16 -1.43 9.50 -26.73 -0.25 -1.69 16 23 C -0.12 -0.95 2.70 -154.51 -0.42 -1.36 16 24 C -0.11 -0.72 9.85 37.16 0.37 -0.36 16 25 C -0.12 -1.02 8.37 37.16 0.31 -0.71 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.65 7.45 -51.93 -0.39 0.26 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.39 3.14 8.84 -40.82 -0.36 2.78 16 32 H 0.39 4.42 8.49 -40.82 -0.35 4.07 16 33 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 38 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 41 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.36 7.92 -51.93 -0.41 -0.05 16 44 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 45 H 0.06 0.66 7.33 -51.93 -0.38 0.28 16 46 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 47 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -32.58 376.69 -9.37 -41.95 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -8.80 Total: 2.66 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -1.81 Total: -10.81 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.15 Total: -45.77 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.58 -9.37 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416677856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.656 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds