Wall clock time and date at job start Tue Mar 31 2020 05:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46924 * 2 1 4 4 H 1.08997 * 109.47041 * 54.99651 * 3 2 1 5 5 N 1.46498 * 109.46994 * 294.99881 * 3 2 1 6 6 C 1.34774 * 120.00109 * 84.99843 * 5 3 2 7 7 O 1.21588 * 120.00325 * 359.97438 * 6 5 3 8 8 N 1.34779 * 120.00239 * 179.97438 * 6 5 3 9 9 C 1.46496 * 120.00447 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47294 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48510 * 109.46866 * 90.00390 * 16 14 12 18 18 H 1.48502 * 109.47245 * 210.00175 * 16 14 12 19 19 H 1.48494 * 109.47271 * 330.00312 * 16 14 12 20 20 C 1.52994 * 109.46925 * 174.99881 * 3 2 1 21 21 H 1.08993 * 115.55550 * 34.32911 * 20 3 2 22 22 C 1.53007 * 117.49659 * 248.61571 * 20 3 2 23 23 C 1.53001 * 60.00163 * 252.51163 * 22 20 3 24 24 C 1.52993 * 117.50330 * 252.51009 * 23 22 20 25 25 C 1.52996 * 117.51338 * 107.47925 * 23 22 20 26 26 H 1.09006 * 109.46847 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47513 * 299.99812 * 1 2 3 28 28 H 1.08998 * 109.47294 * 60.00205 * 1 2 3 29 29 H 1.08995 * 109.47372 * 239.99685 * 2 1 3 30 30 H 1.09002 * 109.47347 * 119.99288 * 2 1 3 31 31 H 0.97006 * 119.99928 * 265.00240 * 5 3 2 32 32 H 0.97006 * 119.99798 * 0.02562 * 8 6 5 33 33 H 1.09001 * 109.47054 * 59.99647 * 9 8 6 34 34 H 1.09004 * 109.47074 * 300.00161 * 9 8 6 35 35 H 1.09001 * 109.46832 * 60.00150 * 10 9 8 36 36 H 1.08993 * 109.47194 * 299.99671 * 10 9 8 37 37 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 38 38 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 39 39 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 40 40 H 1.08997 * 117.50069 * 0.02562 * 22 20 3 41 41 H 1.09006 * 117.49322 * 145.02511 * 22 20 3 42 42 H 1.09000 * 109.47293 * 128.62271 * 24 23 22 43 43 H 1.09002 * 109.47213 * 248.62749 * 24 23 22 44 44 H 1.09001 * 109.46969 * 8.62084 * 24 23 22 45 45 H 1.09003 * 109.47405 * 351.37628 * 25 23 22 46 46 H 1.09005 * 109.47330 * 111.37421 * 25 23 22 47 47 H 1.08999 * 109.47358 * 231.36916 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6643 -1.3670 7 8 -0.3417 2.6318 -0.4322 8 7 0.0787 3.2673 -2.5185 9 6 -1.2443 3.8839 -2.6436 10 6 -1.3929 4.4938 -4.0389 11 6 -2.7749 5.1372 -4.1697 12 6 -2.9210 5.7385 -5.5438 13 1 -2.1095 5.6683 -6.2530 14 6 -4.0911 6.3772 -5.8959 15 7 -5.0794 6.4622 -5.0324 16 14 -4.2725 7.1219 -7.5994 17 1 -4.8391 6.1081 -8.5250 18 1 -5.1814 8.2943 -7.5330 19 1 -2.9413 7.5550 -8.0947 20 6 3.5647 1.4444 0.1257 21 1 4.0779 0.6172 -0.3644 22 6 4.1655 1.9766 1.4284 23 6 4.2704 2.8019 0.1443 24 6 5.6425 2.8940 -0.5261 25 6 3.3972 4.0535 0.0352 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 2.2719 2.1231 -1.9978 32 1 0.6982 3.2930 -3.2645 33 1 -1.3531 4.6660 -1.8921 34 1 -2.0138 3.1266 -2.4938 35 1 -1.2839 3.7120 -4.7906 36 1 -0.6235 5.2512 -4.1882 37 1 -3.5440 4.3794 -4.0205 38 1 -2.8843 5.9189 -3.4180 39 1 -5.9024 6.9120 -5.2800 40 1 3.4744 2.3250 2.1959 41 1 5.0741 1.4993 1.7955 42 1 5.5503 2.6318 -1.5801 43 1 6.0230 3.9116 -0.4368 44 1 6.3320 2.2044 -0.0391 45 1 2.6966 4.0817 0.8698 46 1 4.0295 4.9411 0.0615 47 1 2.8436 4.0295 -0.9034 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416677857.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:35 Heat of formation + Delta-G solvation = -37.794330 kcal Electronic energy + Delta-G solvation = -22568.533468 eV Core-core repulsion = 19365.060468 eV Total energy + Delta-G solvation = -3203.473000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.38072 -38.75005 -35.77525 -34.73055 -33.36168 -32.30518 -30.81535 -29.74825 -27.78898 -26.98522 -25.91910 -23.07421 -22.18135 -20.98343 -20.68760 -20.26234 -19.14140 -17.82703 -16.66383 -16.23611 -15.72446 -15.14961 -14.75457 -14.62716 -14.40683 -14.23238 -13.92293 -13.77369 -13.21623 -13.04835 -12.93574 -12.50722 -12.26551 -12.19969 -12.04416 -11.79249 -11.64905 -11.51315 -11.47423 -11.05232 -10.89999 -10.81370 -10.69213 -10.57415 -10.42892 -9.95349 -9.83671 -9.79774 -9.40371 -9.10714 -8.93433 -8.51403 -8.35868 -6.00561 -4.03574 2.78914 3.31450 3.37787 3.40539 3.44947 3.50937 4.19263 4.39904 4.45368 4.47814 4.65255 4.81334 4.91390 5.04509 5.12242 5.33191 5.35192 5.37821 5.41829 5.51862 5.63892 5.66198 5.70696 5.72707 5.77312 5.81171 5.84983 5.91661 5.98504 6.00389 6.13727 6.19724 6.22383 6.48990 6.60383 6.62833 6.65672 6.86760 7.05954 7.17122 7.65545 7.78755 7.98635 8.24726 8.39676 8.85848 9.03247 9.60508 11.10771 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025200 B = 0.002877 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.854539 B = 9730.221391 C =10408.602099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.197 3.803 4 H 0.087 0.913 5 N -0.741 5.741 6 C 0.700 3.300 7 O -0.588 6.588 8 N -0.744 5.744 9 C 0.137 3.863 10 C -0.120 4.120 11 C 0.024 3.976 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.161 4.161 21 H 0.107 0.893 22 C -0.162 4.162 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.116 4.116 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.393 0.607 32 H 0.392 0.608 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.261 0.739 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.451 -11.246 10.537 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.092 3.908 4 H 0.105 0.895 5 N -0.397 5.397 6 C 0.400 3.600 7 O -0.466 6.466 8 N -0.398 5.398 9 C 0.013 3.987 10 C -0.158 4.158 11 C -0.013 4.013 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.180 4.180 21 H 0.125 0.875 22 C -0.199 4.199 23 C -0.118 4.118 24 C -0.172 4.172 25 C -0.173 4.173 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.226 0.774 32 H 0.225 0.775 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 20.502 -11.185 11.434 26.003 hybrid contribution 0.394 0.366 -1.655 1.740 sum 20.896 -10.819 9.779 25.482 Atomic orbital electron populations 1.21783 0.94562 1.00179 1.03577 1.21940 0.97271 0.96001 1.01666 1.20304 0.90566 0.92940 0.86984 0.89485 1.45212 1.15942 1.61617 1.16927 1.15977 0.81977 0.78440 0.83576 1.90923 1.51778 1.64986 1.38954 1.45412 1.19241 1.60778 1.14414 1.21466 0.81456 0.96613 0.99128 1.21882 1.01840 0.99227 0.92862 1.19023 0.89573 0.95628 0.97115 1.21210 1.00146 1.35770 0.98898 0.92680 1.25030 0.95973 0.96273 0.97205 1.69969 1.05108 1.43498 1.34716 0.86587 0.77970 0.78808 0.84577 1.20674 1.21212 1.19902 1.22744 0.94480 0.97890 1.02861 0.87466 1.23276 1.02618 1.03203 0.90835 1.21558 0.97103 0.92409 1.00755 1.21363 0.93662 1.02054 1.00120 1.21408 0.98435 0.94666 1.02780 0.94026 0.92231 0.92006 0.92196 0.91501 0.77392 0.77502 0.92086 0.92092 0.92854 0.92837 0.96287 0.96278 0.92936 0.88582 0.88670 0.92197 0.92041 0.92600 0.92489 0.92533 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.51 37.16 0.32 -1.49 16 2 C -0.13 -1.27 5.59 -26.73 -0.15 -1.42 16 3 C 0.20 1.96 1.79 -67.93 -0.12 1.83 16 4 H 0.09 1.07 7.21 -51.93 -0.37 0.70 16 5 N -0.74 -7.81 3.09 -58.68 -0.18 -7.99 16 6 C 0.70 10.22 7.04 -86.92 -0.61 9.61 16 7 O -0.59 -10.85 13.48 5.29 0.07 -10.78 16 8 N -0.74 -10.64 5.56 -65.23 -0.36 -11.00 16 9 C 0.14 2.43 5.67 -4.05 -0.02 2.41 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 12 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 13 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 16 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.16 -1.23 4.94 -90.62 -0.45 -1.68 16 21 H 0.11 0.73 8.11 -51.93 -0.42 0.31 16 22 C -0.16 -1.18 9.47 -26.73 -0.25 -1.44 16 23 C -0.12 -0.91 2.67 -154.51 -0.41 -1.32 16 24 C -0.11 -0.74 9.85 37.15 0.37 -0.37 16 25 C -0.12 -1.07 8.69 37.16 0.32 -0.75 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.83 7.84 -51.93 -0.41 0.42 16 28 H 0.06 0.93 5.64 -51.93 -0.29 0.63 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.39 3.28 8.55 -40.82 -0.35 2.93 16 32 H 0.39 4.53 8.49 -40.82 -0.35 4.19 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.10 0.75 7.96 -51.93 -0.41 0.34 16 41 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 44 H 0.05 0.32 7.90 -51.93 -0.41 -0.09 16 45 H 0.06 0.60 7.78 -51.93 -0.40 0.20 16 46 H 0.06 0.49 7.92 -51.93 -0.41 0.07 16 47 H 0.07 0.67 6.48 -51.93 -0.34 0.33 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -31.66 372.63 -9.61 -41.27 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -8.76 Total: 2.63 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.70 Total: -10.05 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.19 Total: -45.22 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.66 -9.61 -41.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416677857.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.473 kcal (2) G-P(sol) polarization free energy of solvation -31.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds