Wall clock time and date at job start Tue Mar 31 2020 05:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47393 * 2 1 4 4 H 1.09001 * 109.46794 * 305.00136 * 3 2 1 5 5 N 1.46493 * 109.47022 * 64.99639 * 3 2 1 6 6 C 1.34773 * 120.00480 * 275.00267 * 5 3 2 7 7 O 1.21591 * 120.00058 * 359.97438 * 6 5 3 8 8 N 1.34776 * 120.00282 * 180.02562 * 6 5 3 9 9 C 1.46506 * 120.00027 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47033 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46988 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.46843 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00516 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99783 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99707 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99956 * 180.27458 * 14 12 11 17 17 H 1.48497 * 109.47172 * 179.72730 * 16 14 12 18 18 H 1.48506 * 109.47132 * 299.72429 * 16 14 12 19 19 H 1.48501 * 109.47173 * 59.72550 * 16 14 12 20 20 C 1.53000 * 109.47097 * 185.00093 * 3 2 1 21 21 H 1.09002 * 115.54846 * 325.72071 * 20 3 2 22 22 C 1.53000 * 117.49839 * 111.39109 * 20 3 2 23 23 C 1.53002 * 117.49501 * 180.02562 * 20 3 2 24 24 C 1.52999 * 117.50129 * 359.97438 * 23 20 3 25 25 C 1.53000 * 117.49791 * 145.02148 * 23 20 3 26 26 H 1.09001 * 109.46876 * 300.00130 * 1 2 3 27 27 H 1.08994 * 109.46947 * 59.99875 * 1 2 3 28 28 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47345 * 239.99658 * 2 1 3 30 30 H 1.09002 * 109.47220 * 119.99977 * 2 1 3 31 31 H 0.97005 * 119.99968 * 95.00516 * 5 3 2 32 32 H 0.96996 * 120.00282 * 0.02562 * 8 6 5 33 33 H 1.08998 * 109.47293 * 59.99931 * 9 8 6 34 34 H 1.08997 * 109.46855 * 300.00178 * 9 8 6 35 35 H 1.09006 * 109.46826 * 60.00209 * 10 9 8 36 36 H 1.08997 * 109.47123 * 300.00144 * 10 9 8 37 37 H 1.09001 * 109.46361 * 60.00532 * 11 10 9 38 38 H 1.08997 * 109.46991 * 300.00423 * 11 10 9 39 39 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 40 40 H 1.08999 * 117.49848 * 214.97943 * 22 20 3 41 41 H 1.09002 * 117.49954 * 359.97438 * 22 20 3 42 42 H 1.08998 * 109.46765 * 60.00472 * 24 23 20 43 43 H 1.08997 * 109.47166 * 179.97438 * 24 23 20 44 44 H 1.08998 * 109.47445 * 300.00479 * 24 23 20 45 45 H 1.08999 * 109.47019 * 59.99716 * 25 23 20 46 46 H 1.08997 * 109.47239 * 180.02562 * 25 23 20 47 47 H 1.08999 * 109.47296 * 299.99788 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6525 2.0975 1.2517 6 6 0.4353 2.6644 1.3669 7 8 -0.3411 2.6327 0.4317 8 7 0.0789 3.2674 2.5183 9 6 -1.2441 3.8842 2.6433 10 6 -1.3932 4.4930 4.0390 11 6 -2.7747 5.1376 4.1693 12 6 -2.9213 5.7378 5.5438 13 1 -2.1105 5.6663 6.2537 14 6 -4.0910 6.3774 5.8956 15 7 -5.0789 6.4632 5.0317 16 14 -4.2699 7.1281 7.5967 17 1 -5.6089 7.7579 7.7216 18 1 -4.1248 6.0658 8.6243 19 1 -3.2182 8.1573 7.7967 20 6 3.5649 1.4443 -0.1257 21 1 4.0780 0.6164 0.3638 22 6 4.1658 1.9766 -1.4283 23 6 4.2707 2.8017 -0.1438 24 6 3.3975 4.0534 -0.0353 25 6 5.6428 2.8934 0.5268 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.2720 2.1232 1.9977 32 1 0.6986 3.2938 3.2641 33 1 -2.0137 3.1269 2.4935 34 1 -1.3528 4.6662 1.8918 35 1 -0.6237 5.2502 4.1892 36 1 -1.2846 3.7106 4.7901 37 1 -3.5444 4.3806 4.0190 38 1 -2.8828 5.9200 3.4181 39 1 -5.9020 6.9129 5.2793 40 1 5.0743 1.4992 -1.7955 41 1 3.4747 2.3251 -2.1958 42 1 2.8432 4.0294 0.9030 43 1 4.0299 4.9408 -0.0606 44 1 2.6975 4.0816 -0.8702 45 1 6.3322 2.2039 0.0395 46 1 6.0231 3.9111 0.4383 47 1 5.5506 2.6308 1.5806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416677859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:38 Heat of formation + Delta-G solvation = -37.735554 kcal Electronic energy + Delta-G solvation = -22568.413889 eV Core-core repulsion = 19364.943438 eV Total energy + Delta-G solvation = -3203.470452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.38037 -38.74889 -35.77463 -34.72999 -33.36076 -32.30481 -30.81526 -29.74783 -27.78978 -26.98469 -25.91819 -23.07251 -22.18091 -20.98343 -20.68748 -20.26135 -19.14166 -17.82710 -16.66323 -16.23388 -15.72382 -15.14905 -14.75458 -14.62666 -14.40953 -14.23361 -13.92181 -13.77293 -13.21639 -13.04856 -12.93596 -12.50686 -12.25663 -12.19981 -12.04414 -11.79622 -11.64793 -11.51379 -11.47444 -11.05303 -10.88168 -10.81103 -10.68908 -10.60212 -10.42837 -9.95268 -9.83338 -9.79703 -9.40094 -9.11795 -8.93437 -8.51417 -8.35517 -6.00330 -4.03417 2.78937 3.32763 3.37527 3.39347 3.44996 3.50875 4.19266 4.39902 4.45402 4.47870 4.65280 4.81295 4.91366 5.04507 5.12255 5.33208 5.35287 5.37764 5.41865 5.51894 5.63920 5.66218 5.70675 5.72734 5.77330 5.81150 5.85024 5.91671 5.98498 6.00415 6.13740 6.19718 6.22410 6.48968 6.60408 6.62849 6.65698 6.86761 7.05981 7.17133 7.65403 7.78886 7.98728 8.24759 8.39763 8.85862 9.03169 9.60543 11.10950 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025194 B = 0.002877 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.092325 B = 9729.530919 C =10408.492573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 C 0.197 3.803 4 H 0.087 0.913 5 N -0.741 5.741 6 C 0.700 3.300 7 O -0.588 6.588 8 N -0.744 5.744 9 C 0.137 3.863 10 C -0.120 4.120 11 C 0.025 3.975 12 C -0.523 4.523 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.893 3.107 17 H -0.287 1.287 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.161 4.161 21 H 0.107 0.893 22 C -0.162 4.162 23 C -0.118 4.118 24 C -0.116 4.116 25 C -0.115 4.115 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.393 0.607 32 H 0.392 0.608 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.430 -11.245 -10.534 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C 0.092 3.908 4 H 0.105 0.895 5 N -0.397 5.397 6 C 0.400 3.600 7 O -0.466 6.466 8 N -0.398 5.398 9 C 0.013 3.987 10 C -0.158 4.158 11 C -0.013 4.013 12 C -0.561 4.561 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.213 1.213 18 H -0.203 1.203 19 H -0.202 1.202 20 C -0.180 4.180 21 H 0.125 0.875 22 C -0.199 4.199 23 C -0.118 4.118 24 C -0.173 4.173 25 C -0.172 4.172 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.226 0.774 32 H 0.225 0.775 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.476 -11.184 -11.432 25.981 hybrid contribution 0.411 0.373 1.658 1.748 sum 20.887 -10.811 -9.775 25.469 Atomic orbital electron populations 1.21782 0.94563 1.00181 1.03575 1.21941 0.97271 0.96002 1.01666 1.20304 0.90567 0.92938 0.86988 0.89484 1.45210 1.15940 1.61616 1.16929 1.15976 0.81975 0.78442 0.83577 1.90924 1.51805 1.64998 1.38920 1.45412 1.19232 1.60765 1.14435 1.21467 0.81453 0.96619 0.99123 1.21884 1.01844 0.99228 0.92859 1.19016 0.89578 0.95612 0.97092 1.21176 1.00188 1.35883 0.98877 0.92730 1.25030 0.95957 0.96258 0.97207 1.69959 1.05137 1.43413 1.34778 0.86646 0.77185 0.79467 0.84611 1.21274 1.20266 1.20249 1.22744 0.94479 0.97882 1.02861 0.87467 1.23280 1.02619 1.03214 0.90833 1.21564 0.97103 0.92408 1.00749 1.21407 0.98436 0.94663 1.02782 1.21363 0.93662 1.02052 1.00119 0.92009 0.92230 0.94022 0.91501 0.92198 0.77393 0.77503 0.92094 0.92079 0.92847 0.92847 0.96287 0.96287 0.92876 0.88671 0.88583 0.91551 0.92531 0.92484 0.92595 0.92042 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.51 37.16 0.32 -1.49 16 2 C -0.13 -1.27 5.59 -26.73 -0.15 -1.42 16 3 C 0.20 1.96 1.79 -67.93 -0.12 1.83 16 4 H 0.09 1.07 7.21 -51.93 -0.37 0.70 16 5 N -0.74 -7.81 3.09 -58.68 -0.18 -8.00 16 6 C 0.70 10.22 7.04 -86.92 -0.61 9.61 16 7 O -0.59 -10.85 13.48 5.29 0.07 -10.78 16 8 N -0.74 -10.64 5.56 -65.22 -0.36 -11.00 16 9 C 0.14 2.43 5.67 -4.04 -0.02 2.41 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 12 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 16 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C -0.16 -1.23 4.94 -90.62 -0.45 -1.68 16 21 H 0.11 0.73 8.11 -51.93 -0.42 0.31 16 22 C -0.16 -1.18 9.47 -26.72 -0.25 -1.44 16 23 C -0.12 -0.91 2.67 -154.49 -0.41 -1.32 16 24 C -0.12 -1.07 8.69 37.16 0.32 -0.75 16 25 C -0.11 -0.74 9.85 37.16 0.37 -0.37 16 26 H 0.06 0.93 5.65 -51.93 -0.29 0.63 16 27 H 0.06 0.83 7.84 -51.93 -0.41 0.42 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.39 3.28 8.55 -40.82 -0.35 2.93 16 32 H 0.39 4.53 8.49 -40.82 -0.35 4.19 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 40 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 41 H 0.10 0.75 7.96 -51.93 -0.41 0.34 16 42 H 0.07 0.67 6.48 -51.93 -0.34 0.33 16 43 H 0.06 0.49 7.92 -51.93 -0.41 0.07 16 44 H 0.06 0.60 7.78 -51.93 -0.40 0.20 16 45 H 0.05 0.32 7.90 -51.93 -0.41 -0.09 16 46 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -31.64 372.63 -9.61 -41.25 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -8.76 Total: 2.67 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -1.70 Total: -10.06 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.19 Total: -45.23 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.64 -9.61 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416677859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.511 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds