Wall clock time and date at job start Tue Mar 31 2020 06:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 N 1.46497 * 109.47275 * 120.00344 * 2 1 3 5 5 C 1.34778 * 120.00161 * 120.00052 * 4 2 1 6 6 O 1.21282 * 119.99731 * 179.97438 * 5 4 2 7 7 C 1.50698 * 120.00055 * 359.97438 * 5 4 2 8 8 H 1.09007 * 109.47068 * 319.99891 * 7 5 4 9 9 N 1.46898 * 109.47198 * 200.00440 * 7 5 4 10 10 C 1.52996 * 109.47290 * 80.00033 * 7 5 4 11 11 C 1.53002 * 109.47298 * 184.99962 * 10 7 5 12 12 C 1.50699 * 109.47065 * 180.02562 * 11 10 7 13 13 H 1.08003 * 120.00077 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99923 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00203 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99920 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47469 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47003 * 120.00016 * 16 14 12 19 19 H 1.48501 * 109.47351 * 239.99624 * 16 14 12 20 20 C 1.46504 * 120.00065 * 299.99603 * 4 2 1 21 21 C 1.55238 * 110.46889 * 234.81118 * 20 4 2 22 22 C 1.54894 * 102.58338 * 203.39139 * 21 20 4 23 23 C 1.54266 * 104.31305 * 37.93170 * 22 21 20 24 24 C 1.53869 * 106.60031 * 336.32486 * 23 22 21 25 25 H 1.09003 * 109.46792 * 299.99737 * 1 2 3 26 26 H 1.09001 * 109.46943 * 59.99618 * 1 2 3 27 27 H 1.08997 * 109.46840 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46792 * 240.00263 * 2 1 3 29 29 H 1.08999 * 109.47211 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47478 * 300.00054 * 3 2 1 31 31 H 1.08998 * 109.47491 * 60.00457 * 3 2 1 32 32 H 1.00899 * 111.00371 * 176.04501 * 9 7 5 33 33 H 1.00901 * 110.99726 * 299.99919 * 9 7 5 34 34 H 1.08998 * 109.47301 * 305.00424 * 10 7 5 35 35 H 1.09000 * 109.46876 * 64.99917 * 10 7 5 36 36 H 1.08999 * 109.46958 * 300.00049 * 11 10 7 37 37 H 1.09004 * 109.46815 * 60.00489 * 11 10 7 38 38 H 0.97000 * 120.00264 * 180.02562 * 15 14 12 39 39 H 1.09007 * 110.42957 * 357.46245 * 20 4 2 40 40 H 1.08996 * 110.89448 * 85.10703 * 21 20 4 41 41 H 1.08993 * 110.76342 * 321.62368 * 21 20 4 42 42 H 1.09002 * 110.48891 * 279.18596 * 22 21 20 43 43 H 1.08998 * 110.48494 * 156.67683 * 22 21 20 44 44 H 1.09001 * 110.03084 * 95.60669 * 23 22 21 45 45 H 1.08996 * 110.03108 * 216.98559 * 23 22 21 46 46 H 1.08999 * 110.04012 * 119.28327 * 24 23 22 47 47 H 1.09006 * 110.02998 * 240.67078 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.7933 -1.7865 1.0724 6 8 3.1979 -2.3579 2.0627 7 6 3.1569 -2.3016 -0.2963 8 1 2.2922 -2.2235 -0.9555 9 7 3.5709 -3.7075 -0.1964 10 6 4.3083 -1.4700 -0.8650 11 6 4.5948 -1.9108 -2.3019 12 6 5.7294 -1.0921 -2.8617 13 1 6.1989 -0.3330 -2.2536 14 6 6.1673 -1.3114 -4.1505 15 7 5.5953 -2.2354 -4.8911 16 14 7.5733 -0.2961 -4.8447 17 1 8.0403 0.6699 -3.8181 18 1 8.6925 -1.1951 -5.2247 19 1 7.1044 0.4444 -6.0434 20 6 1.6646 -0.1902 2.5268 21 6 2.9435 0.0599 3.3704 22 6 2.4119 -0.0267 4.8227 23 6 1.3663 -1.1601 4.7793 24 6 0.8912 -1.2641 3.3195 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.7581 -4.0951 -1.1089 33 1 4.3715 -3.8064 0.4097 34 1 4.0336 -0.4153 -0.8564 35 1 5.1994 -1.6183 -0.2550 36 1 4.8696 -2.9656 -2.3104 37 1 3.7037 -1.7624 -2.9119 38 1 5.9036 -2.3900 -5.7977 39 1 1.0745 0.7227 2.4454 40 1 3.3554 1.0485 3.1682 41 1 3.6868 -0.7151 3.1843 42 1 1.9435 0.9134 5.1143 43 1 3.2194 -0.2787 5.5101 44 1 1.8214 -2.1000 5.0916 45 1 0.5261 -0.9181 5.4299 46 1 1.1156 -2.2544 2.9233 47 1 -0.1803 -1.0729 3.2611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424089588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:43 Heat of formation + Delta-G solvation = -60.707190 kcal Electronic energy + Delta-G solvation = -23967.148522 eV Core-core repulsion = 20762.681945 eV Total energy + Delta-G solvation = -3204.466576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.47872 -37.44742 -36.19378 -35.24250 -32.83279 -31.35261 -29.88808 -28.68623 -28.25495 -27.16359 -26.04360 -23.78743 -21.71486 -21.27230 -20.51991 -20.10965 -18.19367 -17.32127 -16.33426 -16.26229 -15.36495 -14.85393 -14.63878 -14.47893 -14.40422 -14.01896 -13.62258 -13.45672 -13.26623 -13.13853 -12.66115 -12.60490 -12.26313 -12.12759 -11.81512 -11.53554 -11.48504 -11.20545 -11.14775 -11.07588 -11.02933 -10.98118 -10.83713 -10.67218 -10.59649 -10.34298 -9.97618 -9.75500 -9.24028 -8.99788 -8.45262 -8.44544 -8.13170 -6.08947 -4.11887 2.98857 3.10727 3.25533 3.33775 3.37578 4.38918 4.58138 4.64034 4.73675 4.88693 4.95125 5.09087 5.18655 5.27052 5.28391 5.34459 5.49655 5.52763 5.55886 5.57212 5.61472 5.69047 5.70177 5.77526 5.80210 5.90893 5.93836 5.95338 6.05890 6.09394 6.20004 6.27508 6.29307 6.36424 6.45049 6.55007 6.88721 6.90024 7.46166 7.52415 7.61542 7.71844 7.88340 7.93378 8.31170 8.54586 8.94278 9.53156 11.01965 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022428 B = 0.004246 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.153093 B = 6593.335668 C = 6768.301554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.121 3.879 3 C -0.162 4.162 4 N -0.604 5.604 5 C 0.528 3.472 6 O -0.530 6.530 7 C 0.071 3.929 8 H 0.094 0.906 9 N -0.830 5.830 10 C -0.139 4.139 11 C 0.025 3.975 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.148 3.852 21 C -0.141 4.141 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.132 4.132 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.353 0.647 33 H 0.345 0.655 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.261 0.739 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.025 5.799 13.662 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 C -0.220 4.220 4 N -0.338 5.338 5 C 0.317 3.683 6 O -0.406 6.406 7 C -0.044 4.044 8 H 0.112 0.888 9 N -0.362 5.362 10 C -0.179 4.179 11 C -0.012 4.012 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C 0.044 3.956 21 C -0.179 4.179 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.170 4.170 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.534 5.268 14.322 19.128 hybrid contribution 1.604 0.997 -1.054 2.163 sum -9.929 6.265 13.268 17.717 Atomic orbital electron populations 1.22176 0.95099 1.02466 1.02194 1.21329 0.94252 0.94005 0.88650 1.22174 1.02344 0.95434 1.02043 1.48076 1.51247 1.28451 1.05980 1.20774 0.76873 0.78978 0.91709 1.90581 1.53192 1.57188 1.39640 1.21545 0.99834 0.90352 0.92640 0.88792 1.58759 1.44395 1.14860 1.18215 1.22419 0.95826 0.99101 1.00511 1.19098 0.96920 0.96729 0.88475 1.21207 1.17132 1.19442 0.98205 0.92712 1.25001 0.96835 0.95324 0.97096 1.69958 1.41629 1.32403 1.09202 0.86551 0.82305 0.80238 0.79020 1.19767 1.20957 1.20951 1.21850 0.95773 0.96287 0.81662 1.23003 0.98541 1.02226 0.94143 1.22231 0.98365 0.98200 0.96884 1.21987 0.98109 0.99119 0.96137 1.22449 0.98522 1.00857 0.95219 0.92534 0.91343 0.92182 0.87841 0.91685 0.91282 0.92661 0.83222 0.84216 0.92348 0.92786 0.96458 0.96430 0.92955 0.89476 0.92120 0.88769 0.92156 0.91810 0.91729 0.92439 0.90267 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.19 37.16 0.34 -1.26 16 2 C 0.12 1.46 2.44 -67.93 -0.17 1.30 16 3 C -0.16 -1.80 9.10 37.16 0.34 -1.46 16 4 N -0.60 -8.22 2.41 -156.50 -0.38 -8.60 16 5 C 0.53 8.79 6.05 -10.99 -0.07 8.72 16 6 O -0.53 -9.95 12.61 5.56 0.07 -9.88 16 7 C 0.07 1.23 2.34 -68.87 -0.16 1.07 16 8 H 0.09 1.57 6.62 -51.93 -0.34 1.23 16 9 N -0.83 -14.51 8.94 -5.66 -0.05 -14.56 16 10 C -0.14 -2.73 4.47 -26.73 -0.12 -2.85 16 11 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 12 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 13 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 16 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.15 1.80 2.41 -66.08 -0.16 1.64 16 21 C -0.14 -1.79 6.25 -24.55 -0.15 -1.95 16 22 C -0.12 -1.27 6.82 -25.07 -0.17 -1.44 16 23 C -0.12 -1.27 6.80 -25.62 -0.17 -1.45 16 24 C -0.13 -1.61 6.07 -25.62 -0.16 -1.76 16 25 H 0.06 0.51 7.13 -51.93 -0.37 0.14 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 1.41 4.85 -51.93 -0.25 1.16 16 29 H 0.06 0.83 7.55 -51.93 -0.39 0.44 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.54 7.01 -51.93 -0.36 0.18 16 32 H 0.35 6.19 7.55 -39.29 -0.30 5.89 16 33 H 0.34 6.10 8.58 -39.29 -0.34 5.76 16 34 H 0.06 1.11 6.38 -51.93 -0.33 0.78 16 35 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.02 0.43 6.87 -51.93 -0.36 0.08 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.09 0.91 6.18 -51.93 -0.32 0.59 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.50 5.74 -51.93 -0.30 1.20 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 1.20 6.34 -51.93 -0.33 0.87 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 355.76 15.07 5.36 5.36 Total: -1.00 -29.61 355.76 -8.65 -38.26 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -8.18 Total: 10.33 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.19 Total: -11.93 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.31 Total: -48.28 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.88 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.61 -8.65 -38.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424089588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.448 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds