Wall clock time and date at job start Tue Mar 31 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46840 * 2 1 4 4 N 1.46494 * 109.47436 * 119.99949 * 2 1 3 5 5 C 1.34779 * 120.00067 * 119.99858 * 4 2 1 6 6 O 1.21288 * 119.99913 * 180.02562 * 5 4 2 7 7 C 1.50697 * 120.00165 * 0.02562 * 5 4 2 8 8 H 1.08999 * 109.46735 * 39.99477 * 7 5 4 9 9 N 1.46898 * 109.47308 * 160.00009 * 7 5 4 10 10 C 1.53001 * 109.46679 * 280.00070 * 7 5 4 11 11 C 1.53006 * 109.46971 * 175.00011 * 10 7 5 12 12 C 1.50700 * 109.47138 * 179.97438 * 11 10 7 13 13 H 1.08001 * 120.00082 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99687 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99663 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 120.00241 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.46811 * 90.00077 * 16 14 12 18 18 H 1.48506 * 109.47044 * 209.99686 * 16 14 12 19 19 H 1.48493 * 109.46880 * 329.99863 * 16 14 12 20 20 C 1.46500 * 120.00026 * 300.00391 * 4 2 1 21 21 C 1.54961 * 110.92632 * 126.53830 * 20 4 2 22 22 C 1.54270 * 104.16191 * 156.29508 * 21 20 4 23 23 C 1.53869 * 106.63967 * 336.44607 * 22 21 20 24 24 C 1.54268 * 106.60115 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.47141 * 299.99936 * 1 2 3 26 26 H 1.08998 * 109.47321 * 60.00120 * 1 2 3 27 27 H 1.09002 * 109.46841 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47141 * 240.00064 * 2 1 3 29 29 H 1.09001 * 109.46818 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47066 * 300.00037 * 3 2 1 31 31 H 1.09000 * 109.47202 * 60.00101 * 3 2 1 32 32 H 1.00897 * 111.00198 * 59.99322 * 9 7 5 33 33 H 1.00902 * 110.99736 * 183.95570 * 9 7 5 34 34 H 1.09004 * 109.46768 * 294.99397 * 10 7 5 35 35 H 1.08993 * 109.47771 * 55.00139 * 10 7 5 36 36 H 1.08995 * 109.46897 * 299.99516 * 11 10 7 37 37 H 1.09001 * 109.47055 * 59.99329 * 11 10 7 38 38 H 0.97000 * 119.99907 * 179.97438 * 15 14 12 39 39 H 1.09001 * 110.67461 * 3.22943 * 20 4 2 40 40 H 1.08997 * 110.47708 * 37.64106 * 21 20 4 41 41 H 1.09002 * 110.53308 * 274.97498 * 21 20 4 42 42 H 1.09002 * 110.03399 * 217.13605 * 22 21 20 43 43 H 1.08995 * 110.02943 * 95.75505 * 22 21 20 44 44 H 1.08999 * 110.03405 * 119.26051 * 23 22 21 45 45 H 1.09001 * 110.03705 * 240.64196 * 23 22 21 46 46 H 1.08997 * 110.48788 * 142.28685 * 24 23 22 47 47 H 1.09000 * 110.48806 * 264.79985 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.7933 -1.7864 1.0724 6 8 3.1972 -2.3584 2.0627 7 6 3.1578 -2.3010 -0.2963 8 1 3.3722 -1.4597 -0.9554 9 7 4.3452 -3.1600 -0.1963 10 6 1.9898 -3.1094 -0.8647 11 6 2.3098 -3.5265 -2.3016 12 6 1.1597 -4.3234 -2.8614 13 1 0.2875 -4.5130 -2.2533 14 6 1.2205 -4.8094 -4.1502 15 7 0.2166 -5.5044 -4.6389 16 14 2.7288 -4.4809 -5.2022 17 1 3.7151 -5.5738 -5.0082 18 1 2.3315 -4.4206 -6.6319 19 1 3.3384 -3.1871 -4.8029 20 6 1.6645 -0.1901 2.5267 21 6 1.0332 -1.3115 3.3900 22 6 1.2843 -0.8563 4.8424 23 6 2.4931 0.0949 4.8034 24 6 2.9358 0.1847 3.3283 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 4.1717 -3.9476 0.4099 33 1 4.6482 -3.4657 -1.1089 34 1 1.8327 -3.9990 -0.2547 35 1 1.0870 -2.4989 -0.8563 36 1 2.4669 -2.6371 -2.9117 37 1 3.2127 -4.1371 -2.3102 38 1 0.2592 -5.8461 -5.5457 39 1 0.9906 0.6632 2.4502 40 1 1.5270 -2.2641 3.1980 41 1 -0.0362 -1.3888 3.1939 42 1 1.5078 -1.7186 5.4707 43 1 0.4089 -0.3322 5.2259 44 1 2.2043 1.0809 5.1672 45 1 3.3030 -0.3053 5.4133 46 1 3.2541 1.1987 3.0866 47 1 3.7389 -0.5244 3.1272 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424089589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:46 Heat of formation + Delta-G solvation = -57.220292 kcal Electronic energy + Delta-G solvation = -23997.882766 eV Core-core repulsion = 20793.567392 eV Total energy + Delta-G solvation = -3204.315373 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53802 -37.53512 -36.26526 -35.39251 -32.79598 -31.41717 -30.32072 -28.70792 -28.39101 -27.20778 -26.33258 -23.71935 -21.72299 -21.31393 -20.34427 -20.17185 -18.32579 -17.38966 -16.72685 -16.36766 -15.46460 -14.84838 -14.72351 -14.60250 -14.22662 -14.04581 -13.69455 -13.57571 -13.35831 -13.17201 -12.79562 -12.67136 -12.60811 -12.27338 -11.98915 -11.66921 -11.51298 -11.37293 -11.24203 -11.13152 -11.07231 -11.01089 -10.89901 -10.72060 -10.33813 -10.21750 -10.08548 -9.87135 -9.31961 -9.11233 -8.62629 -8.50438 -8.27182 -6.12288 -4.11720 2.90167 3.03417 3.24395 3.32723 3.33790 4.37022 4.53639 4.60402 4.68696 4.80859 4.90143 5.01171 5.09154 5.20244 5.20967 5.28779 5.43501 5.47351 5.47940 5.53878 5.57399 5.62053 5.65016 5.68246 5.75718 5.85231 5.89427 5.91306 6.02821 6.04914 6.10367 6.23076 6.26586 6.29015 6.34725 6.42448 6.66432 6.84774 7.09171 7.21408 7.35016 7.62035 7.66784 7.79246 8.43833 8.46733 8.91801 9.49123 11.00961 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023746 B = 0.004407 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.865566 B = 6352.656001 C = 6555.557016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 C -0.161 4.161 4 N -0.602 5.602 5 C 0.529 3.471 6 O -0.529 6.529 7 C 0.068 3.932 8 H 0.095 0.905 9 N -0.830 5.830 10 C -0.131 4.131 11 C -0.010 4.010 12 C -0.522 4.522 13 H 0.071 0.929 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.265 1.265 20 C 0.147 3.853 21 C -0.143 4.143 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.136 4.136 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.347 0.653 33 H 0.349 0.651 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.017 0.983 37 H 0.011 0.989 38 H 0.264 0.736 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 14.685 13.312 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 C -0.220 4.220 4 N -0.335 5.335 5 C 0.317 3.683 6 O -0.405 6.405 7 C -0.047 4.047 8 H 0.113 0.887 9 N -0.362 5.362 10 C -0.171 4.171 11 C -0.047 4.047 12 C -0.560 4.560 13 H 0.089 0.911 14 C -0.134 4.134 15 N -0.539 5.539 16 Si 0.707 3.293 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.190 1.190 20 C 0.044 3.956 21 C -0.181 4.181 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.174 4.174 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.035 0.965 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.455 14.921 13.988 20.743 hybrid contribution -0.071 -0.576 -1.212 1.343 sum 3.384 14.346 12.777 19.506 Atomic orbital electron populations 1.22183 0.94607 1.03160 1.02142 1.21334 0.94889 0.93493 0.88498 1.22179 1.01690 0.95793 1.02296 1.48000 1.51134 1.28349 1.06066 1.20679 0.76846 0.79185 0.91547 1.90576 1.52907 1.57464 1.39515 1.21585 0.92291 0.97771 0.93044 0.88728 1.58745 1.33416 1.26145 1.17891 1.22246 0.96482 0.99197 0.99174 1.19568 0.97393 0.96446 0.91311 1.21055 1.03003 1.33121 0.98853 0.91090 1.25033 0.96066 0.94495 0.97776 1.69911 1.31294 1.36279 1.16452 0.86786 0.83517 0.79336 0.79686 1.20221 1.21327 1.18977 1.21925 0.95975 0.96293 0.81439 1.22819 1.00186 1.01036 0.94045 1.21997 0.97623 0.99035 0.96897 1.22004 0.97970 0.99034 0.96586 1.22721 0.98926 1.01343 0.94444 0.92588 0.91208 0.91555 0.87991 0.92221 0.91324 0.92431 0.83901 0.83661 0.92130 0.91698 0.96465 0.97099 0.92642 0.89297 0.88742 0.92172 0.91887 0.92311 0.92298 0.91916 0.92296 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.10 37.16 0.34 -1.43 16 2 C 0.12 1.40 2.44 -67.93 -0.17 1.24 16 3 C -0.16 -1.51 9.19 37.16 0.34 -1.17 16 4 N -0.60 -7.90 2.43 -156.30 -0.38 -8.28 16 5 C 0.53 8.46 6.22 -10.99 -0.07 8.39 16 6 O -0.53 -9.60 12.32 5.55 0.07 -9.53 16 7 C 0.07 1.10 2.34 -68.87 -0.16 0.94 16 8 H 0.09 1.45 6.62 -51.93 -0.34 1.11 16 9 N -0.83 -13.47 8.94 -5.66 -0.05 -13.53 16 10 C -0.13 -2.47 4.47 -26.73 -0.12 -2.59 16 11 C -0.01 -0.22 3.81 -27.88 -0.11 -0.32 16 12 C -0.52 -14.34 9.66 -34.44 -0.33 -14.68 16 13 H 0.07 2.12 7.99 -52.49 -0.42 1.71 16 14 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 16 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 20 C 0.15 1.74 2.43 -65.89 -0.16 1.58 16 21 C -0.14 -1.79 6.18 -25.03 -0.15 -1.95 16 22 C -0.12 -1.24 6.80 -25.61 -0.17 -1.42 16 23 C -0.12 -1.21 6.80 -25.62 -0.17 -1.38 16 24 C -0.14 -1.60 6.21 -25.07 -0.16 -1.76 16 25 H 0.06 0.54 7.01 -51.93 -0.36 0.17 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.84 7.55 -51.93 -0.39 0.45 16 28 H 0.10 1.30 4.85 -51.93 -0.25 1.05 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.49 7.15 -51.93 -0.37 0.12 16 32 H 0.35 5.75 8.58 -39.29 -0.34 5.41 16 33 H 0.35 5.48 7.55 -39.29 -0.30 5.18 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.19 6.38 -51.93 -0.33 0.86 16 36 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 37 H 0.01 0.24 6.30 -51.93 -0.33 -0.09 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 39 H 0.09 0.91 6.21 -51.93 -0.32 0.59 16 40 H 0.09 1.48 5.64 -51.93 -0.29 1.19 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 1.26 6.19 -51.93 -0.32 0.94 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -30.43 351.94 -8.28 -38.72 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -8.14 Total: 10.19 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -1.19 Total: -12.72 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.34 Total: -48.25 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.43 -8.28 -38.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424089589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.504 kcal (2) G-P(sol) polarization free energy of solvation -30.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds