Wall clock time and date at job start Tue Mar 31 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46853 * 2 1 4 4 H 1.08998 * 109.47021 * 55.00698 * 3 2 1 5 5 C 1.52998 * 109.47653 * 295.00206 * 3 2 1 6 6 C 1.52995 * 109.47653 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.47083 * 60.00009 * 6 5 3 8 8 C 1.52999 * 109.46886 * 300.00076 * 7 6 5 9 9 C 1.53003 * 109.47179 * 60.00252 * 8 7 6 10 10 H 1.09001 * 109.47504 * 179.97438 * 9 8 7 11 11 N 1.46497 * 109.47199 * 59.99261 * 9 8 7 12 12 C 1.34781 * 119.99716 * 85.00629 * 11 9 8 13 13 O 1.21286 * 119.99983 * 359.97438 * 12 11 9 14 14 C 1.50699 * 120.00160 * 179.97438 * 12 11 9 15 15 H 1.09002 * 109.46753 * 39.99710 * 14 12 11 16 16 N 1.46898 * 109.47192 * 159.99754 * 14 12 11 17 17 C 1.52992 * 109.47482 * 279.99980 * 14 12 11 18 18 C 1.52997 * 109.47482 * 174.99860 * 17 14 12 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19 27 27 H 1.08995 * 109.47084 * 59.99643 * 1 2 3 28 28 H 1.09006 * 109.46879 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46681 * 299.99363 * 1 2 3 30 30 H 1.09000 * 109.46681 * 240.00637 * 2 1 3 31 31 H 1.08999 * 109.47562 * 120.00375 * 2 1 3 32 32 H 1.08998 * 109.47057 * 59.99952 * 5 3 2 33 33 H 1.09006 * 109.47207 * 300.00615 * 5 3 2 34 34 H 1.08998 * 109.47021 * 300.00492 * 6 5 3 35 35 H 1.09001 * 109.47647 * 179.97438 * 6 5 3 36 36 H 1.09000 * 109.47191 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.46798 * 60.00346 * 7 6 5 38 38 H 1.08998 * 109.47622 * 299.99765 * 8 7 6 39 39 H 1.08998 * 109.47075 * 179.97438 * 8 7 6 40 40 H 0.96994 * 120.00502 * 264.99762 * 11 9 8 41 41 H 1.00899 * 111.00057 * 59.99855 * 16 14 12 42 42 H 1.00898 * 110.99947 * 183.96241 * 16 14 12 43 43 H 1.09002 * 109.47103 * 54.99613 * 17 14 12 44 44 H 1.08998 * 109.46862 * 295.00425 * 17 14 12 45 45 H 1.09002 * 109.47153 * 59.99783 * 18 17 14 46 46 H 1.09001 * 109.46832 * 299.99974 * 18 17 14 47 47 H 0.97002 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1446 3.5693 -1.3070 7 6 3.6694 3.5717 -1.1810 8 6 4.0742 2.8877 0.1263 9 6 3.5648 1.4449 0.1260 10 1 3.8536 0.9574 1.0571 11 7 4.1494 0.7209 -1.0055 12 6 5.3666 0.1545 -0.8867 13 8 5.9782 0.2447 0.1568 14 6 5.9678 -0.5908 -2.0504 15 1 5.7538 -0.0544 -2.9749 16 7 7.4219 -0.6921 -1.8684 17 6 5.3640 -1.9946 -2.1238 18 6 5.8799 -2.7069 -3.3756 19 6 5.2856 -4.0899 -3.4475 20 1 4.6074 -4.4270 -2.6776 21 6 5.6069 -4.9246 -4.4969 22 7 5.0878 -6.1313 -4.5599 23 14 6.7794 -4.3414 -5.8290 24 1 8.1722 -4.6906 -5.4501 25 1 6.4360 -5.0013 -7.1142 26 1 6.6622 -2.8690 -5.9817 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8935 -0.5139 0.8899 32 1 0.5489 2.1253 -1.3968 33 1 2.0697 1.5876 -2.1492 34 1 1.7096 4.1080 -0.4651 35 1 1.8566 4.0566 -2.2385 36 1 4.0323 4.5996 -1.1804 37 1 4.1044 3.0331 -2.0229 38 1 3.6393 3.4264 0.9682 39 1 5.1605 2.8890 0.2159 40 1 3.6605 0.6490 -1.8401 41 1 7.6463 -1.1856 -1.0174 42 1 7.8565 -1.1309 -2.6663 43 1 4.2774 -1.9208 -2.1695 44 1 5.6527 -2.5610 -1.2384 45 1 6.9665 -2.7807 -3.3299 46 1 5.5911 -2.1405 -4.2610 47 1 5.3141 -6.7187 -5.2979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424098915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:10 Heat of formation + Delta-G solvation = -80.921812 kcal Electronic energy + Delta-G solvation = -23440.728204 eV Core-core repulsion = 20235.385056 eV Total energy + Delta-G solvation = -3205.343148 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43642 -38.48725 -35.56768 -34.10065 -33.61527 -32.79711 -30.31050 -30.17380 -29.01673 -26.70598 -24.06157 -23.90882 -22.44985 -21.02858 -20.64081 -19.96303 -19.09511 -17.52705 -16.66899 -15.96897 -15.66053 -15.18011 -14.73885 -14.60462 -14.25906 -14.17493 -14.00835 -13.75821 -13.39407 -13.27687 -12.91828 -12.70968 -12.66672 -12.32961 -12.24420 -11.90205 -11.66167 -11.60271 -11.33397 -11.21288 -10.98081 -10.87723 -10.70351 -10.36984 -10.31562 -10.10887 -10.08096 -9.86949 -9.34925 -9.31590 -8.88195 -8.62310 -8.29191 -6.11995 -4.11393 2.94745 3.24791 3.31464 3.33098 3.34340 4.37426 4.40915 4.50566 4.57443 4.86677 4.97648 5.00656 5.07728 5.10691 5.19007 5.21209 5.27890 5.31658 5.42388 5.46813 5.48353 5.53960 5.57040 5.63447 5.74970 5.85919 5.86060 5.93840 5.98611 6.06179 6.10319 6.13669 6.16761 6.23136 6.28882 6.34621 6.64784 6.67318 7.09187 7.22336 7.36277 7.66745 7.71713 7.79530 8.44301 8.49905 8.92134 9.49433 11.01275 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018068 B = 0.004248 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.326080 B = 6589.088909 C = 7266.107464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.093 4.093 4 H 0.081 0.919 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.130 4.130 9 C 0.152 3.848 10 H 0.085 0.915 11 N -0.724 5.724 12 C 0.527 3.473 13 O -0.539 6.539 14 C 0.071 3.929 15 H 0.094 0.906 16 N -0.830 5.830 17 C -0.128 4.128 18 C -0.010 4.010 19 C -0.523 4.523 20 H 0.071 0.929 21 C 0.068 3.932 22 N -0.901 5.901 23 Si 0.880 3.120 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.265 1.265 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.399 0.601 41 H 0.348 0.652 42 H 0.349 0.651 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.011 0.989 46 H 0.018 0.982 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.369 19.080 6.819 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.112 4.112 4 H 0.099 0.901 5 C -0.155 4.155 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.168 4.168 9 C 0.048 3.952 10 H 0.103 0.897 11 N -0.377 5.377 12 C 0.313 3.687 13 O -0.414 6.414 14 C -0.044 4.044 15 H 0.112 0.888 16 N -0.362 5.362 17 C -0.168 4.168 18 C -0.048 4.048 19 C -0.561 4.561 20 H 0.089 0.911 21 C -0.134 4.134 22 N -0.540 5.540 23 Si 0.708 3.292 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.190 1.190 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.234 0.766 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.029 0.971 46 H 0.036 0.964 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.929 19.777 7.499 22.258 hybrid contribution 0.149 -0.992 -1.256 1.608 sum -6.781 18.785 6.243 20.924 Atomic orbital electron populations 1.21811 0.95839 1.01759 1.01538 1.21572 0.95790 0.95716 1.02855 1.21466 0.94083 0.96756 0.98856 0.90053 1.21653 1.00987 0.95619 0.97277 1.21550 0.95872 0.96624 1.01611 1.21498 0.95622 1.00250 0.98217 1.21910 1.01699 0.95398 0.97820 1.20889 0.91859 0.91888 0.90610 0.89690 1.46079 1.19235 1.55899 1.16530 1.20737 0.80614 0.77727 0.89608 1.90632 1.60786 1.59948 1.30077 1.21511 0.90032 0.96829 0.96069 0.88793 1.58728 1.07160 1.61562 1.08775 1.22183 1.00677 0.92796 1.01160 1.19573 0.95913 0.96589 0.92714 1.21068 1.28495 0.96755 1.09798 0.91086 1.25038 0.95832 0.94686 0.97848 1.69912 1.44302 1.07603 1.32138 0.86774 0.81547 0.79433 0.81490 1.20209 1.21336 1.18993 0.92544 0.92671 0.93036 0.91391 0.91845 0.91367 0.91908 0.92093 0.92090 0.92282 0.91781 0.91453 0.91315 0.76589 0.83876 0.83624 0.91970 0.92120 0.97078 0.96410 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.67 37.16 0.36 -0.94 16 2 C -0.12 -1.19 5.17 -26.73 -0.14 -1.33 16 3 C -0.09 -0.81 1.98 -90.62 -0.18 -0.99 16 4 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.12 -0.93 4.79 -26.73 -0.13 -1.06 16 6 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 7 C -0.12 -1.06 5.77 -26.73 -0.15 -1.21 16 8 C -0.13 -1.33 5.60 -26.73 -0.15 -1.47 16 9 C 0.15 1.67 2.23 -67.93 -0.15 1.52 16 10 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 11 N -0.72 -8.83 3.62 -53.80 -0.19 -9.02 16 12 C 0.53 8.28 7.04 -10.98 -0.08 8.20 16 13 O -0.54 -10.13 15.91 5.55 0.09 -10.04 16 14 C 0.07 1.13 3.21 -68.87 -0.22 0.91 16 15 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 16 N -0.83 -13.48 8.94 -5.66 -0.05 -13.53 16 17 C -0.13 -2.40 4.78 -26.74 -0.13 -2.53 16 18 C -0.01 -0.23 3.81 -27.88 -0.11 -0.34 16 19 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 20 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 21 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 22 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 23 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 27 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.74 7.61 -51.93 -0.40 0.35 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.50 6.56 -51.93 -0.34 0.16 16 33 H 0.06 0.52 6.51 -51.93 -0.34 0.19 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.64 7.60 -51.93 -0.39 0.24 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 4.31 6.67 -40.82 -0.27 4.04 16 41 H 0.35 5.79 8.58 -39.29 -0.34 5.45 16 42 H 0.35 5.48 7.55 -39.29 -0.30 5.18 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.01 0.24 6.30 -51.93 -0.33 -0.08 16 46 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -31.18 358.47 -8.78 -39.96 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -8.47 Total: 10.69 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -1.66 Total: -13.29 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: 0.53 Total: -49.13 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.18 -8.78 -39.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.957 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds