Wall clock time and date at job start Tue Mar 31 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46853 * 2 1 4 4 H 1.08998 * 109.47021 * 55.00698 * 3 2 1 5 5 C 1.52998 * 109.47653 * 295.00206 * 3 2 1 6 6 C 1.52995 * 109.47653 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.47083 * 60.00009 * 6 5 3 8 8 C 1.52999 * 109.46886 * 300.00076 * 7 6 5 9 9 C 1.53003 * 109.47179 * 60.00252 * 8 7 6 10 10 H 1.09001 * 109.47504 * 179.97438 * 9 8 7 11 11 N 1.46497 * 109.47199 * 59.99261 * 9 8 7 12 12 C 1.34781 * 119.99716 * 85.00629 * 11 9 8 13 13 O 1.21286 * 119.99983 * 359.97438 * 12 11 9 14 14 C 1.50699 * 120.00160 * 179.97438 * 12 11 9 15 15 H 1.09002 * 109.46753 * 39.99710 * 14 12 11 16 16 N 1.46898 * 109.47192 * 159.99754 * 14 12 11 17 17 C 1.52992 * 109.47482 * 279.99980 * 14 12 11 18 18 C 1.52997 * 109.47482 * 174.99860 * 17 14 12 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 14 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19 27 27 H 1.08995 * 109.47084 * 59.99643 * 1 2 3 28 28 H 1.09006 * 109.46879 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46681 * 299.99363 * 1 2 3 30 30 H 1.09000 * 109.46681 * 240.00637 * 2 1 3 31 31 H 1.08999 * 109.47562 * 120.00375 * 2 1 3 32 32 H 1.08998 * 109.47057 * 59.99952 * 5 3 2 33 33 H 1.09006 * 109.47207 * 300.00615 * 5 3 2 34 34 H 1.08998 * 109.47021 * 300.00492 * 6 5 3 35 35 H 1.09001 * 109.47647 * 179.97438 * 6 5 3 36 36 H 1.09000 * 109.47191 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.46798 * 60.00346 * 7 6 5 38 38 H 1.08998 * 109.47622 * 299.99765 * 8 7 6 39 39 H 1.08998 * 109.47075 * 179.97438 * 8 7 6 40 40 H 0.96994 * 120.00502 * 264.99762 * 11 9 8 41 41 H 1.00899 * 111.00057 * 59.99855 * 16 14 12 42 42 H 1.00898 * 110.99947 * 183.96241 * 16 14 12 43 43 H 1.09002 * 109.47103 * 54.99613 * 17 14 12 44 44 H 1.08998 * 109.46862 * 295.00425 * 17 14 12 45 45 H 1.09002 * 109.47153 * 59.99783 * 18 17 14 46 46 H 1.09001 * 109.46832 * 299.99974 * 18 17 14 47 47 H 0.97002 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1446 3.5693 -1.3070 7 6 3.6694 3.5717 -1.1810 8 6 4.0742 2.8877 0.1263 9 6 3.5648 1.4449 0.1260 10 1 3.8536 0.9574 1.0571 11 7 4.1494 0.7209 -1.0055 12 6 5.3666 0.1545 -0.8867 13 8 5.9782 0.2447 0.1568 14 6 5.9678 -0.5908 -2.0504 15 1 5.7538 -0.0544 -2.9749 16 7 7.4219 -0.6921 -1.8684 17 6 5.3640 -1.9946 -2.1238 18 6 5.8799 -2.7069 -3.3756 19 6 5.2856 -4.0899 -3.4475 20 1 4.6074 -4.4270 -2.6776 21 6 5.6069 -4.9246 -4.4969 22 7 5.0878 -6.1313 -4.5599 23 14 6.7794 -4.3414 -5.8290 24 1 8.1722 -4.6906 -5.4501 25 1 6.4360 -5.0013 -7.1142 26 1 6.6622 -2.8690 -5.9817 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8935 -0.5139 0.8899 32 1 0.5489 2.1253 -1.3968 33 1 2.0697 1.5876 -2.1492 34 1 1.7096 4.1080 -0.4651 35 1 1.8566 4.0566 -2.2385 36 1 4.0323 4.5996 -1.1804 37 1 4.1044 3.0331 -2.0229 38 1 3.6393 3.4264 0.9682 39 1 5.1605 2.8890 0.2159 40 1 3.6605 0.6490 -1.8401 41 1 7.6463 -1.1856 -1.0174 42 1 7.8565 -1.1309 -2.6663 43 1 4.2774 -1.9208 -2.1695 44 1 5.6527 -2.5610 -1.2384 45 1 6.9665 -2.7807 -3.3299 46 1 5.5911 -2.1405 -4.2610 47 1 5.3141 -6.7187 -5.2979 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424098915.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:10 Heat of formation + Delta-G solvation = -101.494904 kcal Electronic energy + Delta-G solvation = -23441.620320 eV Core-core repulsion = 20235.385056 eV Total energy + Delta-G solvation = -3206.235264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.47663 -39.55225 -37.07598 -34.87641 -34.80828 -34.62534 -32.08131 -31.02151 -29.81289 -28.25861 -25.55519 -24.75034 -23.30795 -22.37605 -21.68608 -21.21760 -20.00089 -19.16475 -18.38885 -17.00675 -16.61421 -16.28247 -16.11925 -15.84288 -15.69193 -15.39477 -15.11796 -14.77895 -14.66992 -14.39935 -14.23138 -14.15143 -13.59048 -13.49106 -13.15304 -13.06924 -12.99675 -12.66272 -12.40460 -12.31526 -12.07547 -11.95580 -11.92187 -11.68306 -11.62550 -11.41392 -11.38712 -11.13941 -10.83875 -10.78175 -10.70753 -9.95526 -9.64511 -8.30252 -6.35730 1.38143 1.39275 1.50781 1.67104 2.21371 2.35821 3.05473 3.61132 3.72362 3.77431 3.82798 3.86540 4.09610 4.16137 4.19047 4.22220 4.36356 4.47328 4.52119 4.56216 4.59802 4.67099 4.72546 4.74462 4.79601 4.86664 4.94256 5.02498 5.10564 5.17791 5.21067 5.28790 5.32562 5.34514 5.36569 5.41055 5.45932 5.51674 5.56046 5.62068 5.66844 6.06588 6.24830 6.48551 6.59598 6.72638 7.29137 7.30363 8.86614 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018068 B = 0.004248 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.326080 B = 6589.088909 C = 7266.107464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.082 4.082 4 H 0.097 0.903 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.116 4.116 8 C -0.125 4.125 9 C 0.150 3.850 10 H 0.061 0.939 11 N -0.708 5.708 12 C 0.525 3.475 13 O -0.574 6.574 14 C 0.080 3.920 15 H 0.116 0.884 16 N -0.830 5.830 17 C -0.116 4.116 18 C -0.005 4.005 19 C -0.534 4.534 20 H 0.026 0.974 21 C 0.004 3.996 22 N -0.953 5.953 23 Si 0.953 3.047 24 H -0.268 1.268 25 H -0.287 1.287 26 H -0.237 1.237 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.408 0.592 41 H 0.344 0.656 42 H 0.354 0.646 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.023 0.977 46 H 0.031 0.969 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.611 21.831 5.614 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.101 4.101 4 H 0.115 0.885 5 C -0.154 4.154 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.163 4.163 9 C 0.045 3.955 10 H 0.079 0.921 11 N -0.361 5.361 12 C 0.311 3.689 13 O -0.452 6.452 14 C -0.036 4.036 15 H 0.134 0.866 16 N -0.361 5.361 17 C -0.156 4.156 18 C -0.043 4.043 19 C -0.572 4.572 20 H 0.044 0.956 21 C -0.193 4.193 22 N -0.593 5.593 23 Si 0.776 3.224 24 H -0.193 1.193 25 H -0.213 1.213 26 H -0.160 1.160 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.245 0.755 41 H 0.157 0.843 42 H 0.169 0.831 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.041 0.959 46 H 0.050 0.950 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.202 22.561 6.291 24.504 hybrid contribution 0.148 -1.901 -0.784 2.062 sum -7.054 20.660 5.507 22.515 Atomic orbital electron populations 1.21785 0.94547 1.01631 1.02630 1.21558 0.96930 0.96166 1.01365 1.21405 0.92061 0.96331 1.00288 0.88530 1.21663 1.01836 0.95725 0.96169 1.21520 0.94500 0.96394 1.02674 1.21484 0.96840 1.00277 0.96742 1.21853 1.00003 0.94978 0.99485 1.21002 0.93457 0.92009 0.88993 0.92079 1.45997 1.18040 1.54713 1.17335 1.20700 0.81360 0.77884 0.88922 1.90620 1.61943 1.61512 1.31165 1.21443 0.89786 0.95107 0.97225 0.86645 1.58746 1.07109 1.61464 1.08826 1.21997 1.00827 0.94140 0.98684 1.19497 0.96216 0.93857 0.94723 1.21429 1.27757 0.99480 1.08561 0.95584 1.26062 0.97878 0.94601 1.00766 1.70081 1.46472 1.09347 1.33420 0.85618 0.78829 0.80394 0.77557 1.19330 1.21332 1.16043 0.91467 0.93486 0.91870 0.92908 0.93399 0.90009 0.92360 0.90994 0.91033 0.91522 0.92798 0.89835 0.94015 0.75492 0.84259 0.83129 0.91853 0.94161 0.95924 0.95038 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.67 71.98 0.70 -1.61 16 2 C -0.12 -2.31 5.17 30.59 0.16 -2.15 16 3 C -0.08 -1.30 1.98 -10.79 -0.02 -1.32 16 4 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.12 -1.52 4.79 30.59 0.15 -1.38 16 6 C -0.11 -1.36 5.92 30.59 0.18 -1.18 16 7 C -0.12 -1.81 5.77 30.60 0.18 -1.64 16 8 C -0.12 -2.40 5.60 30.59 0.17 -2.22 16 9 C 0.15 3.18 2.23 45.00 0.10 3.28 16 10 H 0.06 1.61 7.58 -2.39 -0.02 1.60 16 11 N -0.71 -16.80 3.62 -442.51 -1.60 -18.40 16 12 C 0.52 16.32 7.04 87.66 0.62 16.94 16 13 O -0.57 -21.82 15.91 -3.05 -0.05 -21.87 16 14 C 0.08 2.45 3.21 44.17 0.14 2.59 16 15 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 16 N -0.83 -25.84 8.94 -171.81 -1.54 -27.37 16 17 C -0.12 -4.33 4.78 30.59 0.15 -4.18 16 18 C -0.01 -0.24 3.81 29.85 0.11 -0.12 16 19 C -0.53 -30.05 9.66 25.60 0.25 -29.80 16 20 H 0.03 1.64 7.99 -2.91 -0.02 1.62 16 21 C 0.00 0.21 5.47 84.66 0.46 0.67 16 22 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 23 Si 0.95 42.60 27.47 68.60 1.88 44.49 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.24 -9.48 6.54 99.48 0.65 -8.83 16 27 H 0.07 0.90 6.56 -2.39 -0.02 0.89 16 28 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 1.14 7.61 -2.39 -0.02 1.12 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 0.90 6.56 -2.39 -0.02 0.89 16 33 H 0.06 0.83 6.51 -2.38 -0.02 0.81 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.96 7.60 -2.39 -0.02 0.94 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.41 8.26 6.67 -92.71 -0.62 7.64 16 41 H 0.34 11.30 8.58 -89.69 -0.77 10.53 16 42 H 0.35 10.33 7.55 -89.70 -0.68 9.66 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.02 0.94 6.30 -2.39 -0.02 0.92 16 46 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 47 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -69.06 358.47 1.18 -67.89 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: -1.16 Total: 36.36 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 3.34 Total: -22.12 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -2.84 Total: -104.74 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.87 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.49 kcal Total: -69.06 1.18 -67.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098915.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.606 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds