Wall clock time and date at job start Tue Mar 31 2020 05:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46733 * 2 1 4 4 H 1.08995 * 109.47549 * 54.99775 * 3 2 1 5 5 C 1.53003 * 109.46956 * 294.99853 * 3 2 1 6 6 C 1.52997 * 109.47241 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47114 * 59.99975 * 6 5 3 8 8 C 1.53003 * 109.47087 * 300.00120 * 7 6 5 9 9 C 1.52997 * 109.47241 * 59.99958 * 8 7 6 10 10 H 1.09004 * 109.46812 * 60.00212 * 9 8 7 11 11 N 1.46498 * 109.47036 * 180.02562 * 9 8 7 12 12 C 1.34777 * 119.99828 * 274.72131 * 11 9 8 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 9 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 9 15 15 H 1.09001 * 109.46694 * 39.99881 * 14 12 11 16 16 N 1.46893 * 109.47357 * 160.00092 * 14 12 11 17 17 C 1.52998 * 109.46955 * 280.00458 * 14 12 11 18 18 C 1.53001 * 109.47123 * 174.99639 * 17 14 12 19 19 C 1.50698 * 109.47412 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99778 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00112 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00120 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00086 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46978 * 59.99623 * 23 21 19 25 25 H 1.48495 * 109.47083 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46830 * 299.99850 * 23 21 19 27 27 H 1.09005 * 109.47308 * 300.00412 * 1 2 3 28 28 H 1.09000 * 109.47060 * 60.00251 * 1 2 3 29 29 H 1.09000 * 109.47026 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47041 * 240.00089 * 2 1 3 31 31 H 1.09000 * 109.47269 * 119.99238 * 2 1 3 32 32 H 1.09004 * 109.47044 * 300.00025 * 5 3 2 33 33 H 1.08997 * 109.47066 * 60.00132 * 5 3 2 34 34 H 1.09003 * 109.47189 * 180.02562 * 6 5 3 35 35 H 1.08995 * 109.47096 * 299.99819 * 6 5 3 36 36 H 1.08995 * 109.47266 * 59.99948 * 7 6 5 37 37 H 1.09000 * 109.47204 * 180.02562 * 7 6 5 38 38 H 1.09009 * 109.46941 * 299.99855 * 8 7 6 39 39 H 1.08997 * 109.47066 * 180.02562 * 8 7 6 40 40 H 0.97001 * 120.00384 * 95.00578 * 11 9 8 41 41 H 1.00897 * 111.00338 * 296.04602 * 16 14 12 42 42 H 1.00901 * 111.00090 * 60.00145 * 16 14 12 43 43 H 1.08996 * 109.47387 * 294.99310 * 17 14 12 44 44 H 1.08998 * 109.47436 * 54.99647 * 17 14 12 45 45 H 1.09002 * 109.47374 * 299.99970 * 18 17 14 46 46 H 1.08998 * 109.46958 * 59.99715 * 18 17 14 47 47 H 0.97004 * 119.99921 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6351 2.1265 -1.3074 6 6 2.1456 3.5689 -1.3077 7 6 3.6704 3.5703 -1.1823 8 6 4.0752 2.8863 0.1251 9 6 3.5648 1.4440 0.1254 10 1 3.9992 0.9047 -0.7164 11 7 3.9519 0.7893 1.3775 12 6 5.1669 0.2172 1.4912 13 8 5.9417 0.2488 0.5587 14 6 5.5628 -0.4618 2.7770 15 1 4.7108 -1.0141 3.1735 16 7 6.6715 -1.3903 2.5193 17 6 6.0057 0.5916 3.7945 18 6 6.2884 -0.0841 5.1378 19 6 6.7241 0.9534 6.1402 20 1 6.7929 1.9909 5.8482 21 6 7.0358 0.5781 7.4297 22 7 6.9524 -0.6854 7.7851 23 14 7.5765 1.8641 8.6720 24 1 6.4991 2.8717 8.8421 25 1 7.8507 1.2083 9.9758 26 1 8.8091 2.5345 8.1857 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.0698 1.5875 -2.1492 33 1 0.5489 2.1252 -1.3970 34 1 1.8568 4.0563 -2.2390 35 1 1.7112 4.1082 -0.4660 36 1 4.1047 3.0310 -2.0241 37 1 4.0340 4.5978 -1.1821 38 1 3.6409 3.4257 0.9670 39 1 5.1615 2.8877 0.2147 40 1 3.3322 0.7640 2.1234 41 1 6.3844 -2.1331 1.8998 42 1 7.4739 -0.9020 2.1509 43 1 6.9106 1.0834 3.4378 44 1 5.2151 1.3314 3.9192 45 1 5.3835 -0.5760 5.4947 46 1 7.0790 -0.8239 5.0131 47 1 7.1721 -0.9495 8.6923 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424098916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:14 Heat of formation + Delta-G solvation = -86.816181 kcal Electronic energy + Delta-G solvation = -23009.580586 eV Core-core repulsion = 19803.981839 eV Total energy + Delta-G solvation = -3205.598747 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.30111 -38.61779 -35.16887 -34.29751 -34.02942 -32.77519 -30.11321 -29.86437 -29.00787 -26.26954 -24.17630 -23.86405 -22.13788 -20.93056 -20.57638 -20.24954 -19.53646 -17.12223 -16.58285 -16.12556 -15.42511 -15.10717 -15.05182 -14.61734 -14.40917 -14.22760 -14.07372 -13.59156 -13.49155 -13.39244 -12.96537 -12.74826 -12.29446 -11.99639 -11.90097 -11.71235 -11.54232 -11.51267 -11.29792 -11.01309 -10.86887 -10.74943 -10.65693 -10.56961 -10.51859 -10.28656 -10.03339 -9.77319 -9.34740 -8.99749 -8.93130 -8.32313 -8.17220 -5.92605 -3.94801 2.83856 3.31729 3.36725 3.41250 3.43773 4.32810 4.44343 4.51032 4.59296 4.80293 4.90211 4.95176 5.02384 5.11036 5.12893 5.22030 5.24912 5.34281 5.37214 5.42808 5.48157 5.51797 5.56813 5.73402 5.76813 5.78369 5.86801 5.89326 5.90501 5.97370 6.00111 6.08246 6.17083 6.25886 6.45476 6.59401 6.68498 7.10970 7.42329 7.66853 7.77266 7.82817 7.97753 8.14674 8.39346 8.49850 9.13063 9.68233 11.18263 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019570 B = 0.003484 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.390952 B = 8034.976948 C = 8245.296193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.094 4.094 4 H 0.076 0.924 5 C -0.111 4.111 6 C -0.121 4.121 7 C -0.116 4.116 8 C -0.130 4.130 9 C 0.150 3.850 10 H 0.083 0.917 11 N -0.726 5.726 12 C 0.484 3.516 13 O -0.555 6.555 14 C 0.078 3.922 15 H 0.096 0.904 16 N -0.807 5.807 17 C -0.094 4.094 18 C 0.031 3.969 19 C -0.523 4.523 20 H 0.051 0.949 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.889 3.111 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.401 0.599 41 H 0.333 0.667 42 H 0.347 0.653 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.012 0.988 46 H 0.035 0.965 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.492 4.319 -18.705 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.149 4.149 6 C -0.159 4.159 7 C -0.154 4.154 8 C -0.169 4.169 9 C 0.045 3.955 10 H 0.101 0.899 11 N -0.377 5.377 12 C 0.270 3.730 13 O -0.433 6.433 14 C -0.038 4.038 15 H 0.114 0.886 16 N -0.335 5.335 17 C -0.133 4.133 18 C -0.006 4.006 19 C -0.561 4.561 20 H 0.069 0.931 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.717 3.283 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.203 1.203 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.235 0.765 41 H 0.145 0.855 42 H 0.161 0.839 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.031 0.969 46 H 0.053 0.947 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.900 4.053 -18.419 22.849 hybrid contribution -0.121 1.039 0.106 1.051 sum -13.020 5.093 -18.312 23.039 Atomic orbital electron populations 1.21819 0.95769 1.01607 1.01817 1.21571 0.95827 0.95957 1.02462 1.21466 0.94266 0.96595 0.99009 0.90559 1.21586 1.00820 0.95612 0.96882 1.21572 0.95883 0.96663 1.01761 1.21490 0.95676 1.00554 0.97712 1.21926 1.01741 0.95361 0.97873 1.20935 0.93763 0.93062 0.87735 0.89876 1.46244 1.17375 1.57766 1.16307 1.22707 0.80952 0.77897 0.91459 1.90635 1.51026 1.60293 1.41327 1.21828 0.95650 0.95076 0.91247 0.88594 1.58996 1.07114 1.13421 1.53959 1.21641 0.99873 0.95258 0.96500 1.19010 0.97566 0.95813 0.88174 1.21246 1.45270 0.94082 0.95522 0.93069 1.24987 0.95778 0.95132 0.98400 1.69967 1.49074 1.15404 1.18768 0.86715 0.79158 0.81765 0.80663 1.20383 1.21329 1.20319 0.92671 0.92622 0.92828 0.92060 0.91567 0.91851 0.91361 0.92011 0.91887 0.91939 0.91846 0.91709 0.91349 0.76456 0.85536 0.83877 0.92929 0.92892 0.96919 0.94692 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -1.01 5.32 -26.73 -0.14 -1.15 16 3 C -0.09 -0.80 1.77 -90.62 -0.16 -0.96 16 4 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.11 -0.83 4.96 -26.73 -0.13 -0.96 16 6 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 7 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 8 C -0.13 -1.46 5.50 -26.73 -0.15 -1.61 16 9 C 0.15 1.66 1.90 -67.93 -0.13 1.53 16 10 H 0.08 1.08 7.57 -51.93 -0.39 0.69 16 11 N -0.73 -8.94 4.30 -53.81 -0.23 -9.18 16 12 C 0.48 7.56 7.04 -10.98 -0.08 7.48 16 13 O -0.55 -10.18 15.91 5.55 0.09 -10.10 16 14 C 0.08 1.31 3.15 -68.87 -0.22 1.09 16 15 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 16 N -0.81 -13.77 8.44 -5.66 -0.05 -13.82 16 17 C -0.09 -1.91 4.78 -26.73 -0.13 -2.04 16 18 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 19 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 20 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 23 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.36 6.56 -51.93 -0.34 0.02 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.60 7.30 -51.93 -0.38 0.22 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.45 6.56 -51.93 -0.34 0.11 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.40 4.32 8.39 -40.82 -0.34 3.97 16 41 H 0.33 4.94 9.06 -39.29 -0.36 4.59 16 42 H 0.35 6.04 8.58 -39.29 -0.34 5.71 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -31.69 368.12 -9.34 -41.03 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -8.78 Total: 8.56 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.64 Total: -12.56 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: 0.46 Total: -49.28 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.69 -9.34 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.784 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds