Wall clock time and date at job start Tue Mar 31 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46733 * 2 1 4 4 H 1.08995 * 109.47549 * 54.99775 * 3 2 1 5 5 C 1.53003 * 109.46956 * 294.99853 * 3 2 1 6 6 C 1.52997 * 109.47241 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47114 * 59.99975 * 6 5 3 8 8 C 1.53003 * 109.47087 * 300.00120 * 7 6 5 9 9 C 1.52997 * 109.47241 * 59.99958 * 8 7 6 10 10 H 1.09004 * 109.46812 * 60.00212 * 9 8 7 11 11 N 1.46498 * 109.47036 * 180.02562 * 9 8 7 12 12 C 1.34777 * 119.99828 * 274.72131 * 11 9 8 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 9 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 9 15 15 H 1.09001 * 109.46694 * 39.99881 * 14 12 11 16 16 N 1.46893 * 109.47357 * 160.00092 * 14 12 11 17 17 C 1.52998 * 109.46955 * 280.00458 * 14 12 11 18 18 C 1.53001 * 109.47123 * 174.99639 * 17 14 12 19 19 C 1.50698 * 109.47412 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99778 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00112 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00120 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00086 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46978 * 59.99623 * 23 21 19 25 25 H 1.48495 * 109.47083 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46830 * 299.99850 * 23 21 19 27 27 H 1.09005 * 109.47308 * 300.00412 * 1 2 3 28 28 H 1.09000 * 109.47060 * 60.00251 * 1 2 3 29 29 H 1.09000 * 109.47026 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47041 * 240.00089 * 2 1 3 31 31 H 1.09000 * 109.47269 * 119.99238 * 2 1 3 32 32 H 1.09004 * 109.47044 * 300.00025 * 5 3 2 33 33 H 1.08997 * 109.47066 * 60.00132 * 5 3 2 34 34 H 1.09003 * 109.47189 * 180.02562 * 6 5 3 35 35 H 1.08995 * 109.47096 * 299.99819 * 6 5 3 36 36 H 1.08995 * 109.47266 * 59.99948 * 7 6 5 37 37 H 1.09000 * 109.47204 * 180.02562 * 7 6 5 38 38 H 1.09009 * 109.46941 * 299.99855 * 8 7 6 39 39 H 1.08997 * 109.47066 * 180.02562 * 8 7 6 40 40 H 0.97001 * 120.00384 * 95.00578 * 11 9 8 41 41 H 1.00897 * 111.00338 * 296.04602 * 16 14 12 42 42 H 1.00901 * 111.00090 * 60.00145 * 16 14 12 43 43 H 1.08996 * 109.47387 * 294.99310 * 17 14 12 44 44 H 1.08998 * 109.47436 * 54.99647 * 17 14 12 45 45 H 1.09002 * 109.47374 * 299.99970 * 18 17 14 46 46 H 1.08998 * 109.46958 * 59.99715 * 18 17 14 47 47 H 0.97004 * 119.99921 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6351 2.1265 -1.3074 6 6 2.1456 3.5689 -1.3077 7 6 3.6704 3.5703 -1.1823 8 6 4.0752 2.8863 0.1251 9 6 3.5648 1.4440 0.1254 10 1 3.9992 0.9047 -0.7164 11 7 3.9519 0.7893 1.3775 12 6 5.1669 0.2172 1.4912 13 8 5.9417 0.2488 0.5587 14 6 5.5628 -0.4618 2.7770 15 1 4.7108 -1.0141 3.1735 16 7 6.6715 -1.3903 2.5193 17 6 6.0057 0.5916 3.7945 18 6 6.2884 -0.0841 5.1378 19 6 6.7241 0.9534 6.1402 20 1 6.7929 1.9909 5.8482 21 6 7.0358 0.5781 7.4297 22 7 6.9524 -0.6854 7.7851 23 14 7.5765 1.8641 8.6720 24 1 6.4991 2.8717 8.8421 25 1 7.8507 1.2083 9.9758 26 1 8.8091 2.5345 8.1857 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 2.0698 1.5875 -2.1492 33 1 0.5489 2.1252 -1.3970 34 1 1.8568 4.0563 -2.2390 35 1 1.7112 4.1082 -0.4660 36 1 4.1047 3.0310 -2.0241 37 1 4.0340 4.5978 -1.1821 38 1 3.6409 3.4257 0.9670 39 1 5.1615 2.8877 0.2147 40 1 3.3322 0.7640 2.1234 41 1 6.3844 -2.1331 1.8998 42 1 7.4739 -0.9020 2.1509 43 1 6.9106 1.0834 3.4378 44 1 5.2151 1.3314 3.9192 45 1 5.3835 -0.5760 5.4947 46 1 7.0790 -0.8239 5.0131 47 1 7.1721 -0.9495 8.6923 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424098916.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:13 Heat of formation + Delta-G solvation = -107.388644 kcal Electronic energy + Delta-G solvation = -23010.472675 eV Core-core repulsion = 19803.981839 eV Total energy + Delta-G solvation = -3206.490836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40037 -39.61989 -36.77459 -35.23984 -34.84964 -34.78712 -31.92691 -30.75112 -29.78496 -27.98208 -25.52836 -24.83553 -23.25788 -22.13579 -21.65728 -21.31891 -20.63217 -18.64622 -18.00110 -17.64076 -16.85895 -16.49246 -16.00294 -15.87801 -15.64174 -15.24076 -14.98217 -14.83665 -14.54594 -14.27681 -14.16756 -13.81728 -13.78682 -13.45291 -13.40380 -12.77603 -12.60021 -12.53275 -12.37174 -12.28327 -12.25673 -12.02611 -11.76166 -11.69257 -11.64399 -11.41365 -11.28734 -11.21142 -11.07142 -10.92288 -10.48264 -10.01149 -9.59998 -8.13486 -6.23950 1.41753 1.44620 1.51916 1.54873 2.20690 2.44973 3.19385 3.54785 3.59289 3.72160 3.85255 3.92591 4.10828 4.12251 4.21513 4.31604 4.33808 4.41492 4.48458 4.51404 4.54912 4.71361 4.78075 4.81402 4.87024 4.93366 5.01567 5.07941 5.15480 5.17044 5.24492 5.25261 5.29404 5.30047 5.34692 5.47369 5.52941 5.56871 5.61264 5.84583 5.98717 6.10373 6.30647 6.47375 6.55531 6.94462 7.18992 7.44133 8.97541 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019570 B = 0.003484 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.390952 B = 8034.976948 C = 8245.296193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.086 4.086 4 H 0.084 0.916 5 C -0.109 4.109 6 C -0.117 4.117 7 C -0.114 4.114 8 C -0.128 4.128 9 C 0.151 3.849 10 H 0.064 0.936 11 N -0.711 5.711 12 C 0.490 3.510 13 O -0.583 6.583 14 C 0.085 3.915 15 H 0.109 0.891 16 N -0.819 5.819 17 C -0.080 4.080 18 C 0.040 3.960 19 C -0.545 4.545 20 H 0.055 0.945 21 C 0.002 3.998 22 N -0.930 5.930 23 Si 0.959 3.041 24 H -0.266 1.266 25 H -0.283 1.283 26 H -0.271 1.271 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.411 0.589 41 H 0.346 0.654 42 H 0.344 0.656 43 H 0.040 0.960 44 H 0.066 0.934 45 H -0.006 1.006 46 H 0.005 0.995 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.215 5.807 -19.123 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.105 4.105 4 H 0.103 0.897 5 C -0.146 4.146 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.167 4.167 9 C 0.046 3.954 10 H 0.082 0.918 11 N -0.362 5.362 12 C 0.275 3.725 13 O -0.464 6.464 14 C -0.031 4.031 15 H 0.127 0.873 16 N -0.348 5.348 17 C -0.119 4.119 18 C 0.003 3.997 19 C -0.583 4.583 20 H 0.073 0.927 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.784 3.216 24 H -0.190 1.190 25 H -0.209 1.209 26 H -0.197 1.197 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.247 0.753 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.013 0.987 46 H 0.023 0.977 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.665 5.553 -18.848 24.518 hybrid contribution 0.415 0.546 0.217 0.720 sum -14.249 6.099 -18.630 24.235 Atomic orbital electron populations 1.21793 0.94480 1.01923 1.02475 1.21553 0.96913 0.95565 1.01716 1.21429 0.91846 0.97072 1.00151 0.89727 1.21594 1.01838 0.95338 0.95880 1.21557 0.94252 0.96865 1.02780 1.21482 0.97183 1.00431 0.96110 1.21889 0.99706 0.95655 0.99428 1.21033 0.95701 0.92491 0.86138 0.91827 1.46155 1.16350 1.56419 1.17229 1.22300 0.81670 0.77991 0.90512 1.90628 1.52157 1.61488 1.42086 1.21628 0.95904 0.94359 0.91170 0.87328 1.58974 1.07257 1.13959 1.54583 1.21368 0.99883 0.95937 0.94671 1.18820 0.95486 0.94878 0.90552 1.21703 1.45306 0.94809 0.96502 0.92683 1.25898 0.95728 0.97297 1.00631 1.70100 1.50001 1.17506 1.19375 0.85596 0.79054 0.79097 0.77848 1.19033 1.20880 1.19661 0.92314 0.91619 0.92766 0.92724 0.92484 0.92165 0.89631 0.90551 0.91347 0.92482 0.91301 0.91263 0.94491 0.75253 0.84104 0.84239 0.94160 0.91518 0.98722 0.97680 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.67 71.98 0.70 -1.09 16 2 C -0.12 -1.81 5.32 30.60 0.16 -1.65 16 3 C -0.09 -1.30 1.77 -10.79 -0.02 -1.32 16 4 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 5 C -0.11 -1.35 4.96 30.59 0.15 -1.20 16 6 C -0.12 -1.47 5.92 30.59 0.18 -1.29 16 7 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 8 C -0.13 -2.79 5.50 30.59 0.17 -2.62 16 9 C 0.15 3.23 1.90 44.99 0.09 3.31 16 10 H 0.06 1.65 7.57 -2.39 -0.02 1.63 16 11 N -0.71 -16.99 4.30 -442.53 -1.90 -18.89 16 12 C 0.49 15.22 7.04 87.66 0.62 15.84 16 13 O -0.58 -21.64 15.91 -3.04 -0.05 -21.69 16 14 C 0.09 2.86 3.15 44.17 0.14 3.00 16 15 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 16 N -0.82 -28.34 8.44 -171.81 -1.45 -29.79 16 17 C -0.08 -3.27 4.78 30.59 0.15 -3.12 16 18 C 0.04 2.09 4.86 29.85 0.15 2.23 16 19 C -0.55 -31.17 9.11 25.60 0.23 -30.94 16 20 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 21 C 0.00 0.13 5.46 84.65 0.46 0.60 16 22 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 23 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 26 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 27 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.06 0.66 6.56 -2.39 -0.02 0.64 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.96 7.30 -2.39 -0.02 0.94 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 0.82 6.56 -2.39 -0.02 0.81 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.41 8.26 8.39 -92.71 -0.78 7.48 16 41 H 0.35 10.30 9.06 -89.70 -0.81 9.49 16 42 H 0.34 12.27 8.58 -89.69 -0.77 11.50 16 43 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 45 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 46 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 47 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -68.53 368.12 0.85 -67.68 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -1.41 Total: 32.75 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 3.35 Total: -19.99 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -3.07 Total: -105.35 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.05 Total: -21.69 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -68.53 0.85 -67.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098916.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.712 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds