Wall clock time and date at job start Tue Mar 31 2020 05:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 55.00428 * 3 2 1 5 5 C 1.52999 * 109.47592 * 295.00083 * 3 2 1 6 6 C 1.52997 * 109.47592 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47165 * 60.00300 * 6 5 3 8 8 C 1.53002 * 109.46972 * 300.00293 * 7 6 5 9 9 C 1.52997 * 109.47415 * 59.99860 * 8 7 6 10 10 H 1.09000 * 109.47140 * 59.99976 * 9 8 7 11 11 N 1.46500 * 109.47204 * 180.02562 * 9 8 7 12 12 C 1.34775 * 120.00366 * 274.99782 * 11 9 8 13 13 O 1.21282 * 119.99750 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00244 * 180.02562 * 12 11 9 15 15 H 1.08995 * 109.46850 * 320.00096 * 14 12 11 16 16 N 1.46905 * 109.46848 * 200.00335 * 14 12 11 17 17 C 1.52992 * 109.47033 * 80.00326 * 14 12 11 18 18 C 1.53002 * 109.47154 * 185.00182 * 17 14 12 19 19 C 1.50696 * 109.47341 * 179.97438 * 18 17 14 20 20 H 1.08004 * 120.00106 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99947 * 179.97438 * 19 18 17 22 22 N 1.31508 * 120.00330 * 0.02562 * 21 19 18 23 23 Si 1.86812 * 119.99918 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46969 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46842 * 120.00228 * 23 21 19 26 26 H 1.48500 * 109.46984 * 240.00192 * 23 21 19 27 27 H 1.09001 * 109.46995 * 299.99751 * 1 2 3 28 28 H 1.08998 * 109.47867 * 60.00073 * 1 2 3 29 29 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46995 * 240.00249 * 2 1 3 31 31 H 1.08994 * 109.47388 * 119.99954 * 2 1 3 32 32 H 1.09000 * 109.47160 * 300.00333 * 5 3 2 33 33 H 1.09002 * 109.46719 * 60.00054 * 5 3 2 34 34 H 1.09000 * 109.47140 * 300.00346 * 6 5 3 35 35 H 1.09001 * 109.47375 * 180.02562 * 6 5 3 36 36 H 1.08992 * 109.47534 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.47134 * 59.99508 * 7 6 5 38 38 H 1.09000 * 109.46986 * 299.99742 * 8 7 6 39 39 H 1.09001 * 109.47601 * 180.02562 * 8 7 6 40 40 H 0.97001 * 119.99882 * 94.99976 * 11 9 8 41 41 H 1.00901 * 110.99858 * 176.04981 * 16 14 12 42 42 H 1.00902 * 110.99553 * 299.99749 * 16 14 12 43 43 H 1.08999 * 109.47222 * 304.99951 * 17 14 12 44 44 H 1.08996 * 109.47293 * 64.99912 * 17 14 12 45 45 H 1.08999 * 109.46867 * 299.99986 * 18 17 14 46 46 H 1.08996 * 109.47242 * 59.99698 * 18 17 14 47 47 H 0.96999 * 120.00614 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 2.1445 3.5693 -1.3070 7 6 3.6693 3.5718 -1.1811 8 6 4.0741 2.8876 0.1262 9 6 3.5648 1.4450 0.1259 10 1 3.9997 0.9062 -0.7159 11 7 3.9519 0.7901 1.3780 12 6 5.1693 0.2237 1.4938 13 8 5.9446 0.2564 0.5617 14 6 5.5673 -0.4504 2.7816 15 1 5.2068 0.1372 3.6257 16 7 7.0311 -0.5551 2.8474 17 6 4.9530 -1.8505 2.8353 18 6 5.2525 -2.4871 4.1940 19 6 4.6468 -3.8660 4.2472 20 1 4.1023 -4.2498 3.3971 21 6 4.7878 -4.6376 5.3811 22 7 5.4504 -4.1701 6.4164 23 14 4.0364 -6.3466 5.4473 24 1 3.3474 -6.6345 4.1637 25 1 5.1082 -7.3503 5.6692 26 1 3.0569 -6.4139 6.5614 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0697 1.5876 -2.1491 33 1 0.5488 2.1253 -1.3968 34 1 1.7096 4.1080 -0.4652 35 1 1.8558 4.0568 -2.2382 36 1 4.0322 4.5995 -1.1804 37 1 4.1042 3.0330 -2.0228 38 1 3.6392 3.4264 0.9680 39 1 5.1604 2.8897 0.2162 40 1 3.3320 0.7642 2.1236 41 1 7.3265 -0.9452 3.7298 42 1 7.3900 -1.0958 2.0747 43 1 3.8741 -1.7795 2.6973 44 1 5.3807 -2.4656 2.0436 45 1 6.3314 -2.5582 4.3319 46 1 4.8247 -1.8720 4.9856 47 1 5.5493 -4.7128 7.2143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424098917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:17 Heat of formation + Delta-G solvation = -87.836867 kcal Electronic energy + Delta-G solvation = -23084.020185 eV Core-core repulsion = 19878.377177 eV Total energy + Delta-G solvation = -3205.643007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.19450 -38.49507 -35.43735 -34.21416 -33.90956 -32.83850 -29.93447 -29.80989 -28.95338 -26.35107 -24.09050 -24.01613 -22.18340 -20.84820 -20.55991 -20.31270 -19.45296 -17.28198 -16.49076 -16.19585 -15.13577 -14.96933 -14.67445 -14.56835 -14.43778 -14.10478 -14.02750 -13.71604 -13.42446 -13.25814 -12.90239 -12.77227 -12.62697 -12.15510 -11.82561 -11.66122 -11.62347 -11.45757 -11.24497 -11.07674 -10.95653 -10.91988 -10.66672 -10.65145 -10.46700 -10.22755 -9.98369 -9.85586 -9.25711 -9.15769 -8.85031 -8.44442 -8.15358 -6.08709 -4.11706 3.00502 3.25821 3.32756 3.34074 3.37978 4.39177 4.39838 4.51143 4.65411 4.85804 4.97470 5.07908 5.13152 5.17716 5.22521 5.27697 5.28475 5.32175 5.37694 5.46240 5.54451 5.58486 5.61721 5.79335 5.80956 5.85180 5.86353 5.94844 5.97615 6.02664 6.09055 6.15707 6.23275 6.30800 6.32232 6.53642 6.68195 6.88756 7.47125 7.53025 7.62568 7.77950 7.88607 7.93238 8.31391 8.55175 8.94571 9.53277 11.02223 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.003790 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.045985 B = 7385.842859 C = 8485.844501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.093 4.093 4 H 0.075 0.925 5 C -0.112 4.112 6 C -0.121 4.121 7 C -0.116 4.116 8 C -0.129 4.129 9 C 0.153 3.847 10 H 0.085 0.915 11 N -0.730 5.730 12 C 0.526 3.474 13 O -0.539 6.539 14 C 0.074 3.926 15 H 0.095 0.905 16 N -0.831 5.831 17 C -0.136 4.136 18 C 0.024 3.976 19 C -0.522 4.522 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.399 0.601 41 H 0.353 0.647 42 H 0.345 0.655 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.581 14.553 -12.972 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.112 4.112 4 H 0.093 0.907 5 C -0.150 4.150 6 C -0.158 4.158 7 C -0.154 4.154 8 C -0.168 4.168 9 C 0.048 3.952 10 H 0.103 0.897 11 N -0.382 5.382 12 C 0.313 3.687 13 O -0.415 6.415 14 C -0.041 4.041 15 H 0.113 0.887 16 N -0.363 5.363 17 C -0.176 4.176 18 C -0.013 4.013 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.209 1.209 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.234 0.766 41 H 0.169 0.831 42 H 0.158 0.842 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.940 15.318 -13.539 21.931 hybrid contribution -0.899 -2.045 0.683 2.336 sum -8.839 13.273 -12.855 20.483 Atomic orbital electron populations 1.21809 0.95832 1.01707 1.01585 1.21586 0.95793 0.95802 1.02845 1.21454 0.94206 0.96714 0.98833 0.90712 1.21592 1.00855 0.95504 0.97018 1.21571 0.95862 0.96735 1.01667 1.21490 0.95704 1.00442 0.97811 1.21925 1.01715 0.95418 0.97744 1.20907 0.93804 0.92830 0.87685 0.89738 1.46074 1.17062 1.58499 1.16529 1.20858 0.80825 0.77009 0.89980 1.90623 1.50990 1.58981 1.40928 1.21476 0.90756 0.97388 0.94505 0.88737 1.58748 1.07458 1.61087 1.08966 1.22362 1.00031 0.93097 1.02109 1.19106 0.97050 0.95387 0.89786 1.21219 1.34451 1.00229 1.00170 0.92686 1.25013 0.95279 0.98340 0.95701 1.69955 1.41357 1.37323 1.04568 0.86541 0.79057 0.84421 0.78031 1.19755 1.20950 1.20943 0.92776 0.92752 0.92729 0.91962 0.91246 0.91766 0.91367 0.91988 0.92051 0.91941 0.91839 0.91939 0.91296 0.76635 0.83150 0.84188 0.92602 0.92760 0.96417 0.96361 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.67 37.16 0.36 -0.95 16 2 C -0.12 -1.22 5.32 -26.73 -0.14 -1.36 16 3 C -0.09 -0.85 1.76 -90.62 -0.16 -1.01 16 4 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.11 -0.89 4.96 -26.73 -0.13 -1.02 16 6 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 7 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 8 C -0.13 -1.40 5.49 -26.73 -0.15 -1.54 16 9 C 0.15 1.75 1.90 -67.93 -0.13 1.62 16 10 H 0.08 1.16 7.58 -51.93 -0.39 0.77 16 11 N -0.73 -9.38 4.30 -53.80 -0.23 -9.62 16 12 C 0.53 8.70 7.04 -10.99 -0.08 8.62 16 13 O -0.54 -10.55 15.91 5.56 0.09 -10.46 16 14 C 0.07 1.26 3.21 -68.87 -0.22 1.04 16 15 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 16 N -0.83 -14.53 8.94 -5.66 -0.05 -14.58 16 17 C -0.14 -2.67 4.78 -26.73 -0.13 -2.80 16 18 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 19 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 20 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 23 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.41 6.57 -51.93 -0.34 0.07 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.78 7.30 -51.93 -0.38 0.40 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.48 6.57 -51.93 -0.34 0.14 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.40 4.45 8.39 -40.82 -0.34 4.11 16 41 H 0.35 6.19 7.55 -39.29 -0.30 5.90 16 42 H 0.34 6.14 8.58 -39.29 -0.34 5.80 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 366.17 15.07 5.52 5.52 Total: -1.00 -30.54 366.17 -9.27 -39.81 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -8.67 Total: 10.70 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.64 Total: -12.32 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.45 Total: -49.49 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.54 -9.27 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.029 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds