Wall clock time and date at job start Tue Mar 31 2020 05:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 H 1.09000 * 109.47140 * 55.00428 * 3 2 1 5 5 C 1.52999 * 109.47592 * 295.00083 * 3 2 1 6 6 C 1.52997 * 109.47592 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47165 * 60.00300 * 6 5 3 8 8 C 1.53002 * 109.46972 * 300.00293 * 7 6 5 9 9 C 1.52997 * 109.47415 * 59.99860 * 8 7 6 10 10 H 1.09000 * 109.47140 * 59.99976 * 9 8 7 11 11 N 1.46500 * 109.47204 * 180.02562 * 9 8 7 12 12 C 1.34775 * 120.00366 * 274.99782 * 11 9 8 13 13 O 1.21282 * 119.99750 * 0.02562 * 12 11 9 14 14 C 1.50699 * 120.00244 * 180.02562 * 12 11 9 15 15 H 1.08995 * 109.46850 * 320.00096 * 14 12 11 16 16 N 1.46905 * 109.46848 * 200.00335 * 14 12 11 17 17 C 1.52992 * 109.47033 * 80.00326 * 14 12 11 18 18 C 1.53002 * 109.47154 * 185.00182 * 17 14 12 19 19 C 1.50696 * 109.47341 * 179.97438 * 18 17 14 20 20 H 1.08004 * 120.00106 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99947 * 179.97438 * 19 18 17 22 22 N 1.31508 * 120.00330 * 0.02562 * 21 19 18 23 23 Si 1.86812 * 119.99918 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46969 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46842 * 120.00228 * 23 21 19 26 26 H 1.48500 * 109.46984 * 240.00192 * 23 21 19 27 27 H 1.09001 * 109.46995 * 299.99751 * 1 2 3 28 28 H 1.08998 * 109.47867 * 60.00073 * 1 2 3 29 29 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46995 * 240.00249 * 2 1 3 31 31 H 1.08994 * 109.47388 * 119.99954 * 2 1 3 32 32 H 1.09000 * 109.47160 * 300.00333 * 5 3 2 33 33 H 1.09002 * 109.46719 * 60.00054 * 5 3 2 34 34 H 1.09000 * 109.47140 * 300.00346 * 6 5 3 35 35 H 1.09001 * 109.47375 * 180.02562 * 6 5 3 36 36 H 1.08992 * 109.47534 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.47134 * 59.99508 * 7 6 5 38 38 H 1.09000 * 109.46986 * 299.99742 * 8 7 6 39 39 H 1.09001 * 109.47601 * 180.02562 * 8 7 6 40 40 H 0.97001 * 119.99882 * 94.99976 * 11 9 8 41 41 H 1.00901 * 110.99858 * 176.04981 * 16 14 12 42 42 H 1.00902 * 110.99553 * 299.99749 * 16 14 12 43 43 H 1.08999 * 109.47222 * 304.99951 * 17 14 12 44 44 H 1.08996 * 109.47293 * 64.99912 * 17 14 12 45 45 H 1.08999 * 109.46867 * 299.99986 * 18 17 14 46 46 H 1.08996 * 109.47242 * 59.99698 * 18 17 14 47 47 H 0.96999 * 120.00614 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6351 2.1266 -1.3073 6 6 2.1445 3.5693 -1.3070 7 6 3.6693 3.5718 -1.1811 8 6 4.0741 2.8876 0.1262 9 6 3.5648 1.4450 0.1259 10 1 3.9997 0.9062 -0.7159 11 7 3.9519 0.7901 1.3780 12 6 5.1693 0.2237 1.4938 13 8 5.9446 0.2564 0.5617 14 6 5.5673 -0.4504 2.7816 15 1 5.2068 0.1372 3.6257 16 7 7.0311 -0.5551 2.8474 17 6 4.9530 -1.8505 2.8353 18 6 5.2525 -2.4871 4.1940 19 6 4.6468 -3.8660 4.2472 20 1 4.1023 -4.2498 3.3971 21 6 4.7878 -4.6376 5.3811 22 7 5.4504 -4.1701 6.4164 23 14 4.0364 -6.3466 5.4473 24 1 3.3474 -6.6345 4.1637 25 1 5.1082 -7.3503 5.6692 26 1 3.0569 -6.4139 6.5614 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.0697 1.5876 -2.1491 33 1 0.5488 2.1253 -1.3968 34 1 1.7096 4.1080 -0.4652 35 1 1.8558 4.0568 -2.2382 36 1 4.0322 4.5995 -1.1804 37 1 4.1042 3.0330 -2.0228 38 1 3.6392 3.4264 0.9680 39 1 5.1604 2.8897 0.2162 40 1 3.3320 0.7642 2.1236 41 1 7.3265 -0.9452 3.7298 42 1 7.3900 -1.0958 2.0747 43 1 3.8741 -1.7795 2.6973 44 1 5.3807 -2.4656 2.0436 45 1 6.3314 -2.5582 4.3319 46 1 4.8247 -1.8720 4.9856 47 1 5.5493 -4.7128 7.2143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424098917.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:16 Heat of formation + Delta-G solvation = -107.198097 kcal Electronic energy + Delta-G solvation = -23084.859751 eV Core-core repulsion = 19878.377177 eV Total energy + Delta-G solvation = -3206.482573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32328 -39.55753 -37.03903 -35.17787 -34.84570 -34.79610 -31.68907 -30.75130 -29.78406 -27.98109 -25.71629 -24.81530 -23.29708 -22.14112 -21.63172 -21.33982 -20.55917 -18.84678 -18.07016 -17.54249 -16.57631 -16.15342 -15.93300 -15.82258 -15.66852 -15.31928 -14.91499 -14.82927 -14.69448 -14.44994 -14.15353 -13.94636 -13.67984 -13.50351 -13.37944 -12.96009 -12.71179 -12.56206 -12.49723 -12.34706 -12.22620 -12.00384 -11.82296 -11.72378 -11.65975 -11.39356 -11.29852 -11.23408 -11.04625 -10.62737 -10.56859 -9.97698 -9.63703 -8.21968 -6.32284 1.38115 1.39738 1.51512 1.65017 2.16927 2.39618 3.11712 3.58432 3.71600 3.77503 3.83176 3.93772 4.12468 4.14877 4.25134 4.25390 4.35467 4.44648 4.50290 4.54028 4.57532 4.66242 4.72680 4.82799 4.84763 4.89089 5.04061 5.07681 5.11645 5.18811 5.19468 5.26894 5.32530 5.32992 5.36902 5.46161 5.50109 5.55240 5.63850 5.65918 5.80230 6.07278 6.20899 6.46850 6.58179 6.83260 7.28341 7.36910 8.88996 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020052 B = 0.003790 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.045985 B = 7385.842859 C = 8485.844501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.084 4.084 4 H 0.088 0.912 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.114 4.114 8 C -0.125 4.125 9 C 0.152 3.848 10 H 0.059 0.941 11 N -0.714 5.714 12 C 0.528 3.472 13 O -0.573 6.573 14 C 0.080 3.920 15 H 0.108 0.892 16 N -0.830 5.830 17 C -0.119 4.119 18 C 0.030 3.970 19 C -0.543 4.543 20 H 0.054 0.946 21 C 0.005 3.995 22 N -0.927 5.927 23 Si 0.959 3.041 24 H -0.266 1.266 25 H -0.280 1.280 26 H -0.276 1.276 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.410 0.590 41 H 0.352 0.648 42 H 0.343 0.657 43 H 0.065 0.935 44 H 0.042 0.958 45 H 0.002 0.998 46 H 0.002 0.998 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.642 15.277 -13.552 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.103 4.103 4 H 0.107 0.893 5 C -0.148 4.148 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.164 4.164 9 C 0.047 3.953 10 H 0.078 0.922 11 N -0.365 5.365 12 C 0.314 3.686 13 O -0.452 6.452 14 C -0.035 4.035 15 H 0.126 0.874 16 N -0.361 5.361 17 C -0.158 4.158 18 C -0.007 4.007 19 C -0.581 4.581 20 H 0.072 0.928 21 C -0.193 4.193 22 N -0.567 5.567 23 Si 0.784 3.216 24 H -0.190 1.190 25 H -0.206 1.206 26 H -0.202 1.202 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.247 0.753 41 H 0.167 0.833 42 H 0.156 0.844 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.020 0.980 46 H 0.021 0.979 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.038 16.061 -14.121 23.624 hybrid contribution -0.241 -2.249 0.863 2.421 sum -10.279 13.812 -13.258 21.731 Atomic orbital electron populations 1.21782 0.94440 1.01741 1.02597 1.21571 0.96998 0.96006 1.01511 1.21411 0.91953 0.96590 1.00301 0.89333 1.21601 1.01828 0.95565 0.95766 1.21551 0.94376 0.96537 1.02867 1.21487 0.97060 1.00543 0.96163 1.21870 0.99881 0.95108 0.99495 1.21030 0.95585 0.92763 0.85888 0.92239 1.45991 1.15878 1.57157 1.17493 1.20679 0.81603 0.77211 0.89096 1.90612 1.52259 1.60555 1.41745 1.21418 0.90375 0.96117 0.95596 0.87444 1.58764 1.07697 1.60882 1.08781 1.22106 1.00717 0.94133 0.98893 1.18968 0.95616 0.94407 0.91714 1.21636 1.34554 1.01722 1.00230 0.92780 1.25862 0.95709 1.02370 0.95370 1.70062 1.42505 1.38916 1.05168 0.85494 0.78304 0.79485 0.78342 1.19004 1.20587 1.20184 0.92072 0.91384 0.93259 0.93080 0.92882 0.92430 0.89695 0.91033 0.90604 0.90941 0.92733 0.90774 0.94173 0.75338 0.83322 0.84422 0.91607 0.93958 0.98008 0.97930 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.67 71.98 0.70 -1.54 16 2 C -0.12 -2.29 5.32 30.59 0.16 -2.13 16 3 C -0.08 -1.37 1.76 -10.79 -0.02 -1.39 16 4 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 5 C -0.11 -1.47 4.96 30.59 0.15 -1.32 16 6 C -0.12 -1.42 5.92 30.59 0.18 -1.24 16 7 C -0.11 -1.85 5.92 30.59 0.18 -1.67 16 8 C -0.12 -2.59 5.49 30.59 0.17 -2.42 16 9 C 0.15 3.39 1.90 44.99 0.09 3.47 16 10 H 0.06 1.66 7.58 -2.39 -0.02 1.64 16 11 N -0.71 -17.94 4.30 -442.53 -1.91 -19.85 16 12 C 0.53 17.45 7.04 87.66 0.62 18.07 16 13 O -0.57 -22.82 15.91 -3.04 -0.05 -22.86 16 14 C 0.08 2.74 3.21 44.17 0.14 2.88 16 15 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 16 N -0.83 -29.40 8.94 -171.81 -1.54 -30.93 16 17 C -0.12 -4.67 4.78 30.59 0.15 -4.53 16 18 C 0.03 1.48 4.74 29.85 0.14 1.63 16 19 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 20 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 21 C 0.01 0.30 5.46 84.66 0.46 0.76 16 22 N -0.93 -54.39 13.29 21.45 0.28 -54.10 16 23 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.84 6.57 -2.39 -0.02 0.82 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 1.15 7.30 -2.39 -0.02 1.13 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.90 6.57 -2.39 -0.02 0.89 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.41 8.59 8.39 -92.71 -0.78 7.81 16 41 H 0.35 12.58 7.55 -89.69 -0.68 11.90 16 42 H 0.34 12.45 8.58 -89.69 -0.77 11.68 16 43 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.00 0.09 6.87 -2.39 -0.02 0.07 16 46 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -65.54 366.17 0.90 -64.64 By element: Atomic # 1 Polarization: 38.03 SS G_CDS: -1.27 Total: 36.76 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 3.35 Total: -19.11 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -3.16 Total: -104.88 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -65.54 0.90 -64.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098917.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.561 kcal (2) G-P(sol) polarization free energy of solvation -65.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds