Wall clock time and date at job start Tue Mar 31 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46923 * 2 1 4 4 H 1.08995 * 109.47538 * 55.00599 * 3 2 1 5 5 C 1.52996 * 109.47400 * 295.00079 * 3 2 1 6 6 C 1.53002 * 109.47590 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46849 * 59.99853 * 6 5 3 8 8 C 1.52997 * 109.47791 * 300.00425 * 7 6 5 9 9 C 1.53007 * 109.46949 * 59.99752 * 8 7 6 10 10 H 1.08997 * 109.47007 * 180.02562 * 9 8 7 11 11 N 1.46495 * 109.47006 * 60.00283 * 9 8 7 12 12 C 1.34773 * 120.00329 * 84.99849 * 11 9 8 13 13 O 1.21286 * 119.99679 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00386 * 179.97438 * 12 11 9 15 15 H 1.08996 * 109.46818 * 320.00325 * 14 12 11 16 16 N 1.46900 * 109.46977 * 200.00087 * 14 12 11 17 17 C 1.52996 * 109.46997 * 80.00295 * 14 12 11 18 18 C 1.52997 * 109.46947 * 184.99910 * 17 14 12 19 19 C 1.50706 * 109.47238 * 179.97438 * 18 17 14 20 20 H 1.07999 * 119.99515 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00176 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00200 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00139 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47145 * 89.99836 * 23 21 19 25 25 H 1.48496 * 109.47547 * 210.00333 * 23 21 19 26 26 H 1.48499 * 109.47030 * 330.00237 * 23 21 19 27 27 H 1.09007 * 109.46622 * 299.99509 * 1 2 3 28 28 H 1.08996 * 109.47607 * 59.99848 * 1 2 3 29 29 H 1.09007 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46622 * 240.00491 * 2 1 3 31 31 H 1.08992 * 109.47654 * 120.00905 * 2 1 3 32 32 H 1.08998 * 109.46992 * 60.00236 * 5 3 2 33 33 H 1.08998 * 109.47548 * 300.00350 * 5 3 2 34 34 H 1.09007 * 109.46922 * 300.00362 * 6 5 3 35 35 H 1.08991 * 109.47712 * 180.02562 * 6 5 3 36 36 H 1.09000 * 109.47060 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.46774 * 60.00741 * 7 6 5 38 38 H 1.09003 * 109.46663 * 300.00497 * 8 7 6 39 39 H 1.08998 * 109.47640 * 179.97438 * 8 7 6 40 40 H 0.97000 * 119.99963 * 265.00044 * 11 9 8 41 41 H 1.00900 * 110.99557 * 176.04504 * 16 14 12 42 42 H 1.00905 * 111.00223 * 300.00017 * 16 14 12 43 43 H 1.09001 * 109.47372 * 65.00220 * 17 14 12 44 44 H 1.09004 * 109.47108 * 304.99964 * 17 14 12 45 45 H 1.09001 * 109.46832 * 59.99979 * 18 17 14 46 46 H 1.09000 * 109.47611 * 300.00276 * 18 17 14 47 47 H 0.96999 * 120.00061 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 2.1457 3.5689 -1.3076 7 6 3.6705 3.5702 -1.1822 8 6 4.0754 2.8861 0.1251 9 6 3.5649 1.4437 0.1253 10 1 3.8530 0.9565 1.0568 11 7 4.1485 0.7190 -1.0062 12 6 5.3653 0.1518 -0.8878 13 8 5.9770 0.2410 0.1557 14 6 5.9654 -0.5943 -2.0516 15 1 5.1892 -1.1750 -2.5500 16 7 7.0164 -1.4977 -1.5646 17 6 6.5694 0.4045 -3.0408 18 6 7.0672 -0.3425 -4.2798 19 6 7.6616 0.6413 -5.2544 20 1 7.6826 1.6940 -5.0139 21 6 8.1786 0.1976 -6.4530 22 7 8.6978 1.0561 -7.3033 23 14 8.1429 -1.6233 -6.8687 24 1 6.8793 -1.9440 -7.5796 25 1 9.2989 -1.9550 -7.7397 26 1 8.2222 -2.4183 -5.6170 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 0.5489 2.1253 -1.3968 33 1 2.0697 1.5876 -2.1492 34 1 1.7114 4.1082 -0.4657 35 1 1.8570 4.0564 -2.2387 36 1 4.0342 4.5977 -1.1819 37 1 4.1047 3.0309 -2.0241 38 1 3.6411 3.4254 0.9669 39 1 5.1618 2.8866 0.2142 40 1 3.6591 0.6474 -1.8406 41 1 7.3902 -2.0563 -2.3171 42 1 7.7483 -0.9828 -1.0983 43 1 7.4043 0.9231 -2.5694 44 1 5.8103 1.1296 -3.3342 45 1 6.2324 -0.8611 -4.7511 46 1 7.8263 -1.0676 -3.9864 47 1 9.0619 0.7438 -8.1464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424098920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:20 Heat of formation + Delta-G solvation = -80.916423 kcal Electronic energy + Delta-G solvation = -23458.655131 eV Core-core repulsion = 20253.312216 eV Total energy + Delta-G solvation = -3205.342915 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.43250 -38.47885 -35.56589 -34.13532 -33.59707 -32.79588 -30.30695 -30.14526 -29.04160 -26.70680 -24.10425 -23.87394 -22.42942 -21.03278 -20.65892 -19.96687 -19.06871 -17.52727 -16.68189 -15.95937 -15.58506 -15.23655 -14.72357 -14.64414 -14.27182 -14.17566 -13.95881 -13.76899 -13.41602 -13.30090 -12.84689 -12.76267 -12.68348 -12.31809 -12.24845 -11.80917 -11.69242 -11.61499 -11.39964 -11.23139 -10.97378 -10.92256 -10.65232 -10.38820 -10.29750 -10.08519 -10.05477 -9.89049 -9.34761 -9.31418 -8.86860 -8.62350 -8.29372 -6.11908 -4.11386 2.94924 3.24532 3.31578 3.33163 3.34494 4.37410 4.39716 4.50222 4.58581 4.88248 4.98629 5.00948 5.06653 5.10818 5.16977 5.21241 5.27343 5.33672 5.43067 5.43675 5.48894 5.54926 5.55753 5.63717 5.73590 5.80960 5.87578 5.89523 5.99237 6.09062 6.10781 6.15175 6.15277 6.26396 6.30731 6.34668 6.65068 6.67499 7.09842 7.21843 7.36463 7.66732 7.71821 7.79794 8.44317 8.50042 8.92112 9.49461 11.01333 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018559 B = 0.004112 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.362747 B = 6807.103179 C = 7077.835334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.093 4.093 4 H 0.082 0.918 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.121 4.121 8 C -0.130 4.130 9 C 0.153 3.847 10 H 0.085 0.915 11 N -0.724 5.724 12 C 0.527 3.473 13 O -0.539 6.539 14 C 0.071 3.929 15 H 0.094 0.906 16 N -0.831 5.831 17 C -0.128 4.128 18 C -0.011 4.011 19 C -0.523 4.523 20 H 0.071 0.929 21 C 0.067 3.933 22 N -0.901 5.901 23 Si 0.881 3.119 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.265 1.265 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.399 0.601 41 H 0.350 0.650 42 H 0.348 0.652 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.013 0.987 46 H 0.016 0.984 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.557 0.700 13.846 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.112 4.112 4 H 0.100 0.900 5 C -0.155 4.155 6 C -0.156 4.156 7 C -0.158 4.158 8 C -0.169 4.169 9 C 0.048 3.952 10 H 0.103 0.897 11 N -0.378 5.378 12 C 0.313 3.687 13 O -0.414 6.414 14 C -0.045 4.045 15 H 0.112 0.888 16 N -0.362 5.362 17 C -0.168 4.168 18 C -0.048 4.048 19 C -0.561 4.561 20 H 0.089 0.911 21 C -0.134 4.134 22 N -0.540 5.540 23 Si 0.708 3.292 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.190 1.190 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.234 0.766 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.591 0.442 14.892 22.299 hybrid contribution 0.451 -0.305 -1.533 1.627 sum -16.140 0.138 13.359 20.952 Atomic orbital electron populations 1.21821 0.95884 1.01533 1.01764 1.21556 0.95682 0.95981 1.02511 1.21468 0.94182 0.96533 0.99011 0.90006 1.21652 1.00825 0.95897 0.97130 1.21540 0.95978 0.96425 1.01684 1.21514 0.95511 1.00573 0.98234 1.21915 1.01731 0.95291 0.97925 1.20887 0.91762 0.92053 0.90493 0.89723 1.46080 1.19284 1.55951 1.16435 1.20735 0.80667 0.78004 0.89288 1.90631 1.60830 1.60004 1.29979 1.21513 0.96155 0.94497 0.92287 0.88793 1.58736 1.17168 1.27140 1.33189 1.22183 1.00418 0.97805 0.96392 1.19575 0.95887 0.96409 0.92937 1.21066 1.38955 0.95081 1.00999 0.91094 1.25039 0.94614 0.97644 0.96127 1.69912 1.40190 1.34338 1.09516 0.86765 0.77779 0.85931 0.78694 1.20277 1.21339 1.18985 0.92920 0.92455 0.92896 0.91701 0.91920 0.91471 0.91896 0.92176 0.91941 0.92106 0.91428 0.91499 0.91313 0.76594 0.83585 0.83889 0.92106 0.92010 0.96850 0.96612 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.67 37.16 0.36 -0.73 16 2 C -0.12 -1.00 5.17 -26.73 -0.14 -1.14 16 3 C -0.09 -0.78 1.98 -90.62 -0.18 -0.96 16 4 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.12 -0.95 4.79 -26.73 -0.13 -1.08 16 6 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 7 C -0.12 -1.26 5.76 -26.73 -0.15 -1.42 16 8 C -0.13 -1.43 5.60 -26.73 -0.15 -1.58 16 9 C 0.15 1.67 2.23 -67.93 -0.15 1.52 16 10 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 11 N -0.72 -8.82 3.61 -53.80 -0.19 -9.02 16 12 C 0.53 8.28 7.04 -10.99 -0.08 8.20 16 13 O -0.54 -10.14 15.91 5.55 0.09 -10.05 16 14 C 0.07 1.13 3.21 -68.86 -0.22 0.91 16 15 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 16 N -0.83 -13.55 8.94 -5.66 -0.05 -13.60 16 17 C -0.13 -2.40 4.78 -26.73 -0.13 -2.53 16 18 C -0.01 -0.24 3.81 -27.88 -0.11 -0.34 16 19 C -0.52 -14.47 9.66 -34.44 -0.33 -14.81 16 20 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 21 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 22 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 23 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 29 H 0.05 0.37 8.14 -51.92 -0.42 -0.06 16 30 H 0.06 0.58 7.61 -51.93 -0.39 0.19 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.48 6.56 -51.93 -0.34 0.14 16 33 H 0.06 0.54 6.50 -51.93 -0.34 0.20 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.81 7.60 -51.93 -0.39 0.42 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.40 4.30 6.67 -40.82 -0.27 4.03 16 41 H 0.35 5.55 7.55 -39.29 -0.30 5.26 16 42 H 0.35 5.81 8.58 -39.29 -0.34 5.48 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 46 H 0.02 0.35 5.93 -51.93 -0.31 0.04 16 47 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 358.45 15.07 5.40 5.40 Total: -1.00 -31.17 358.45 -8.78 -39.95 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -8.47 Total: 10.78 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -1.66 Total: -13.30 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.53 Total: -49.20 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.17 -8.78 -39.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.967 kcal (2) G-P(sol) polarization free energy of solvation -31.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds