Wall clock time and date at job start Tue Mar 31 2020 05:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46923 * 2 1 4 4 H 1.08995 * 109.47538 * 55.00599 * 3 2 1 5 5 C 1.52996 * 109.47400 * 295.00079 * 3 2 1 6 6 C 1.53002 * 109.47590 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.46849 * 59.99853 * 6 5 3 8 8 C 1.52997 * 109.47791 * 300.00425 * 7 6 5 9 9 C 1.53007 * 109.46949 * 59.99752 * 8 7 6 10 10 H 1.08997 * 109.47007 * 180.02562 * 9 8 7 11 11 N 1.46495 * 109.47006 * 60.00283 * 9 8 7 12 12 C 1.34773 * 120.00329 * 84.99849 * 11 9 8 13 13 O 1.21286 * 119.99679 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00386 * 179.97438 * 12 11 9 15 15 H 1.08996 * 109.46818 * 320.00325 * 14 12 11 16 16 N 1.46900 * 109.46977 * 200.00087 * 14 12 11 17 17 C 1.52996 * 109.46997 * 80.00295 * 14 12 11 18 18 C 1.52997 * 109.46947 * 184.99910 * 17 14 12 19 19 C 1.50706 * 109.47238 * 179.97438 * 18 17 14 20 20 H 1.07999 * 119.99515 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00176 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00200 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00139 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47145 * 89.99836 * 23 21 19 25 25 H 1.48496 * 109.47547 * 210.00333 * 23 21 19 26 26 H 1.48499 * 109.47030 * 330.00237 * 23 21 19 27 27 H 1.09007 * 109.46622 * 299.99509 * 1 2 3 28 28 H 1.08996 * 109.47607 * 59.99848 * 1 2 3 29 29 H 1.09007 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46622 * 240.00491 * 2 1 3 31 31 H 1.08992 * 109.47654 * 120.00905 * 2 1 3 32 32 H 1.08998 * 109.46992 * 60.00236 * 5 3 2 33 33 H 1.08998 * 109.47548 * 300.00350 * 5 3 2 34 34 H 1.09007 * 109.46922 * 300.00362 * 6 5 3 35 35 H 1.08991 * 109.47712 * 180.02562 * 6 5 3 36 36 H 1.09000 * 109.47060 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.46774 * 60.00741 * 7 6 5 38 38 H 1.09003 * 109.46663 * 300.00497 * 8 7 6 39 39 H 1.08998 * 109.47640 * 179.97438 * 8 7 6 40 40 H 0.97000 * 119.99963 * 265.00044 * 11 9 8 41 41 H 1.00900 * 110.99557 * 176.04504 * 16 14 12 42 42 H 1.00905 * 111.00223 * 300.00017 * 16 14 12 43 43 H 1.09001 * 109.47372 * 65.00220 * 17 14 12 44 44 H 1.09004 * 109.47108 * 304.99964 * 17 14 12 45 45 H 1.09001 * 109.46832 * 59.99979 * 18 17 14 46 46 H 1.09000 * 109.47611 * 300.00276 * 18 17 14 47 47 H 0.96999 * 120.00061 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 2.1457 3.5689 -1.3076 7 6 3.6705 3.5702 -1.1822 8 6 4.0754 2.8861 0.1251 9 6 3.5649 1.4437 0.1253 10 1 3.8530 0.9565 1.0568 11 7 4.1485 0.7190 -1.0062 12 6 5.3653 0.1518 -0.8878 13 8 5.9770 0.2410 0.1557 14 6 5.9654 -0.5943 -2.0516 15 1 5.1892 -1.1750 -2.5500 16 7 7.0164 -1.4977 -1.5646 17 6 6.5694 0.4045 -3.0408 18 6 7.0672 -0.3425 -4.2798 19 6 7.6616 0.6413 -5.2544 20 1 7.6826 1.6940 -5.0139 21 6 8.1786 0.1976 -6.4530 22 7 8.6978 1.0561 -7.3033 23 14 8.1429 -1.6233 -6.8687 24 1 6.8793 -1.9440 -7.5796 25 1 9.2989 -1.9550 -7.7397 26 1 8.2222 -2.4183 -5.6170 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 0.5489 2.1253 -1.3968 33 1 2.0697 1.5876 -2.1492 34 1 1.7114 4.1082 -0.4657 35 1 1.8570 4.0564 -2.2387 36 1 4.0342 4.5977 -1.1819 37 1 4.1047 3.0309 -2.0241 38 1 3.6411 3.4254 0.9669 39 1 5.1618 2.8866 0.2142 40 1 3.6591 0.6474 -1.8406 41 1 7.3902 -2.0563 -2.3171 42 1 7.7483 -0.9828 -1.0983 43 1 7.4043 0.9231 -2.5694 44 1 5.8103 1.1296 -3.3342 45 1 6.2324 -0.8611 -4.7511 46 1 7.8263 -1.0676 -3.9864 47 1 9.0619 0.7438 -8.1464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424098920.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:19 Heat of formation + Delta-G solvation = -101.490081 kcal Electronic energy + Delta-G solvation = -23459.547272 eV Core-core repulsion = 20253.312216 eV Total energy + Delta-G solvation = -3206.235055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.48079 -39.55094 -37.07702 -34.86522 -34.80775 -34.63476 -32.08144 -31.03098 -29.81266 -28.25712 -25.55224 -24.73854 -23.31086 -22.40959 -21.66334 -21.21609 -20.00690 -19.16389 -18.40012 -16.99311 -16.55475 -16.34120 -16.18593 -15.76892 -15.69087 -15.48496 -14.99485 -14.77961 -14.68560 -14.52505 -14.16800 -14.12480 -13.53374 -13.49630 -13.13063 -13.11146 -13.01943 -12.68617 -12.39812 -12.31022 -12.09893 -11.96061 -11.86004 -11.70309 -11.61478 -11.41849 -11.39754 -11.13961 -10.84501 -10.77698 -10.71593 -9.94590 -9.65576 -8.30242 -6.35846 1.37557 1.40014 1.51020 1.67060 2.21527 2.35879 3.05377 3.61352 3.72179 3.77834 3.81882 3.86472 4.09355 4.14996 4.18870 4.21712 4.36516 4.48150 4.52816 4.56882 4.57489 4.66461 4.72250 4.76359 4.79008 4.87504 4.93747 5.02720 5.08703 5.17905 5.21268 5.28194 5.33302 5.34613 5.35217 5.41922 5.45340 5.51161 5.57566 5.61973 5.66643 6.06296 6.24689 6.47877 6.59692 6.72470 7.29059 7.30443 8.86590 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018559 B = 0.004112 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.362747 B = 6807.103179 C = 7077.835334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.083 4.083 4 H 0.096 0.904 5 C -0.116 4.116 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.127 4.127 9 C 0.152 3.848 10 H 0.068 0.932 11 N -0.708 5.708 12 C 0.525 3.475 13 O -0.573 6.573 14 C 0.079 3.921 15 H 0.117 0.883 16 N -0.830 5.830 17 C -0.116 4.116 18 C -0.006 4.006 19 C -0.534 4.534 20 H 0.025 0.975 21 C 0.003 3.997 22 N -0.953 5.953 23 Si 0.954 3.046 24 H -0.264 1.264 25 H -0.289 1.289 26 H -0.239 1.239 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.036 0.964 40 H 0.408 0.592 41 H 0.353 0.647 42 H 0.344 0.656 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.030 0.970 46 H 0.025 0.975 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.976 -0.931 14.332 23.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.101 4.101 4 H 0.115 0.885 5 C -0.153 4.153 6 C -0.151 4.151 7 C -0.158 4.158 8 C -0.165 4.165 9 C 0.047 3.953 10 H 0.086 0.914 11 N -0.361 5.361 12 C 0.311 3.689 13 O -0.452 6.452 14 C -0.036 4.036 15 H 0.135 0.865 16 N -0.361 5.361 17 C -0.156 4.156 18 C -0.043 4.043 19 C -0.572 4.572 20 H 0.044 0.956 21 C -0.193 4.193 22 N -0.593 5.593 23 Si 0.776 3.224 24 H -0.189 1.189 25 H -0.215 1.215 26 H -0.162 1.162 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.055 0.945 40 H 0.245 0.755 41 H 0.168 0.832 42 H 0.157 0.843 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.048 0.952 46 H 0.043 0.957 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.054 -1.182 15.386 24.518 hybrid contribution 1.218 0.338 -1.661 2.087 sum -17.835 -0.845 13.725 22.521 Atomic orbital electron populations 1.21793 0.94560 1.01866 1.02437 1.21533 0.96793 0.95528 1.01763 1.21415 0.91733 0.97042 0.99937 0.88537 1.21660 1.01892 0.95266 0.96484 1.21514 0.94029 0.97088 1.02509 1.21498 0.97290 1.00030 0.96955 1.21872 0.99788 0.95765 0.99083 1.20997 0.93696 0.91420 0.89161 0.91403 1.45997 1.18166 1.54671 1.17246 1.20696 0.81407 0.78076 0.88681 1.90619 1.61957 1.61434 1.31216 1.21452 0.96509 0.93871 0.91776 0.86527 1.58756 1.17182 1.26990 1.33188 1.21992 0.99810 0.98098 0.95702 1.19500 0.96283 0.95557 0.92968 1.21426 1.39136 0.94261 1.02414 0.95634 1.26068 0.94081 1.03303 0.95894 1.70081 1.41808 1.37137 1.10299 0.85610 0.78082 0.79252 0.79411 1.18898 1.21536 1.16229 0.92219 0.91769 0.92821 0.92326 0.92860 0.89647 0.92425 0.90765 0.91579 0.92269 0.93462 0.89599 0.94526 0.75492 0.83156 0.84290 0.94232 0.91933 0.95173 0.95716 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.67 71.98 0.70 -1.00 16 2 C -0.12 -1.72 5.17 30.59 0.16 -1.56 16 3 C -0.08 -1.20 1.98 -10.79 -0.02 -1.22 16 4 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 5 C -0.12 -1.55 4.79 30.59 0.15 -1.41 16 6 C -0.11 -1.69 5.92 30.59 0.18 -1.51 16 7 C -0.12 -2.44 5.76 30.59 0.18 -2.27 16 8 C -0.13 -2.75 5.60 30.60 0.17 -2.57 16 9 C 0.15 3.19 2.23 45.00 0.10 3.29 16 10 H 0.07 1.70 7.58 -2.39 -0.02 1.68 16 11 N -0.71 -16.72 3.61 -442.52 -1.60 -18.32 16 12 C 0.52 16.29 7.04 87.66 0.62 16.91 16 13 O -0.57 -21.78 15.91 -3.05 -0.05 -21.83 16 14 C 0.08 2.43 3.21 44.17 0.14 2.57 16 15 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 16 N -0.83 -25.91 8.94 -171.80 -1.54 -27.45 16 17 C -0.12 -4.32 4.78 30.59 0.15 -4.18 16 18 C -0.01 -0.24 3.81 29.85 0.11 -0.13 16 19 C -0.53 -30.10 9.66 25.60 0.25 -29.85 16 20 H 0.03 1.61 7.99 -2.91 -0.02 1.59 16 21 C 0.00 0.19 5.47 84.65 0.46 0.65 16 22 N -0.95 -59.32 13.96 21.44 0.30 -59.02 16 23 Si 0.95 42.60 27.47 68.60 1.88 44.48 16 24 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 25 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.06 0.65 6.56 -2.39 -0.02 0.63 16 29 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.06 0.92 7.61 -2.38 -0.02 0.91 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 0.90 6.56 -2.39 -0.02 0.89 16 33 H 0.06 0.85 6.50 -2.39 -0.02 0.83 16 34 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.14 7.60 -2.39 -0.02 1.12 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.41 8.22 6.67 -92.71 -0.62 7.60 16 41 H 0.35 10.44 7.55 -89.69 -0.68 9.76 16 42 H 0.34 11.34 8.58 -89.69 -0.77 10.57 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 45 H 0.03 1.22 7.57 -2.39 -0.02 1.21 16 46 H 0.02 1.04 5.93 -2.39 -0.01 1.02 16 47 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -69.11 358.45 1.18 -67.94 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -1.16 Total: 36.48 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 3.34 Total: -22.28 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -2.84 Total: -104.79 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.83 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.48 kcal Total: -69.11 1.18 -67.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424098920.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.555 kcal (2) G-P(sol) polarization free energy of solvation -69.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds