Wall clock time and date at job start Tue Mar 31 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47175 * 2 1 4 4 H 1.08997 * 108.44906 * 307.30871 * 3 2 1 5 5 C 1.52570 * 108.51289 * 189.76886 * 3 2 1 6 6 C 1.50886 * 109.35589 * 153.72672 * 5 3 2 7 7 C 1.53948 * 110.09343 * 91.89306 * 6 5 3 8 8 N 1.47602 * 112.14034 * 319.43279 * 7 6 5 9 9 C 1.34774 * 118.64224 * 137.86716 * 8 7 6 10 10 O 1.21283 * 120.00035 * 174.57436 * 9 8 7 11 11 C 1.50696 * 120.00064 * 354.57761 * 9 8 7 12 12 H 1.08997 * 109.47455 * 324.56913 * 11 9 8 13 13 N 1.46905 * 109.47001 * 204.57214 * 11 9 8 14 14 C 1.53004 * 109.47303 * 84.57295 * 11 9 8 15 15 C 1.52997 * 109.47031 * 184.99591 * 14 11 9 16 16 C 1.50701 * 109.46969 * 179.97438 * 15 14 11 17 17 H 1.07996 * 119.99958 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99788 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00129 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99742 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47280 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46775 * 120.00466 * 20 18 16 23 23 H 1.48497 * 109.47445 * 240.00522 * 20 18 16 24 24 C 1.44666 * 122.54224 * 317.86020 * 8 7 6 25 25 C 1.47087 * 108.51562 * 65.00164 * 3 2 1 26 26 H 1.09001 * 109.47241 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46698 * 300.00042 * 1 2 3 28 28 H 1.08995 * 109.47101 * 59.99938 * 1 2 3 29 29 H 1.09008 * 109.47180 * 240.00011 * 2 1 3 30 30 H 1.08997 * 109.47613 * 120.00065 * 2 1 3 31 31 H 1.08995 * 109.49532 * 273.69245 * 5 3 2 32 32 H 1.09005 * 109.49116 * 33.76502 * 5 3 2 33 33 H 1.09001 * 109.36761 * 212.08209 * 6 5 3 34 34 H 1.08999 * 109.36172 * 331.69866 * 6 5 3 35 35 H 1.08992 * 108.94711 * 80.11930 * 7 6 5 36 36 H 1.09002 * 108.94504 * 198.74925 * 7 6 5 37 37 H 1.00903 * 111.00027 * 176.04273 * 13 11 9 38 38 H 1.00904 * 111.00151 * 300.00075 * 13 11 9 39 39 H 1.08995 * 109.46699 * 305.00184 * 14 11 9 40 40 H 1.08997 * 109.46804 * 65.00236 * 14 11 9 41 41 H 1.08994 * 109.47882 * 300.00433 * 15 14 11 42 42 H 1.09005 * 109.46637 * 60.00425 * 15 14 11 43 43 H 0.97006 * 119.99878 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.61629 * 330.84320 * 24 8 7 45 45 H 1.09003 * 109.32267 * 210.89386 * 24 8 7 46 46 H 1.08997 * 109.32796 * 304.31962 * 25 3 2 47 47 H 1.09005 * 109.32813 * 63.96635 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5641 1.9766 -0.8224 5 6 3.5457 1.4239 -0.2455 6 6 3.9653 2.7279 -0.8782 7 6 4.3785 3.7351 0.2103 8 7 3.4839 3.6846 1.3833 9 6 4.0289 3.7446 2.6145 10 8 3.3136 3.8044 3.5920 11 6 5.5271 3.7372 2.7764 12 1 5.9717 3.0953 2.0159 13 7 5.8730 3.2279 4.1102 14 6 6.0641 5.1613 2.6192 15 6 7.5934 5.1370 2.6593 16 6 8.1223 6.5396 2.5039 17 1 7.4363 7.3656 2.3885 18 6 9.4820 6.7682 2.5101 19 7 10.3173 5.7623 2.6511 20 14 10.1375 8.5068 2.3181 21 1 9.0006 9.4519 2.1776 22 1 10.9369 8.8694 3.5160 23 1 10.9961 8.5815 1.1088 24 6 2.0467 3.5737 1.2616 25 6 1.6400 2.0793 1.2641 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.0673 1.2955 0.7029 32 1 3.7953 0.5990 -0.9129 33 1 4.8087 2.5509 -1.5457 34 1 3.1327 3.1360 -1.4511 35 1 5.3959 3.5119 0.5313 36 1 4.3543 4.7404 -0.2103 37 1 6.8731 3.1524 4.2203 38 1 5.4722 3.8065 4.8333 39 1 5.7320 5.5716 1.6656 40 1 5.6892 5.7827 3.4325 41 1 7.9255 4.7267 3.6129 42 1 7.9683 4.5155 1.8461 43 1 11.2739 5.9232 2.6550 44 1 1.7214 4.0368 0.3301 45 1 1.5733 4.0800 2.1029 46 1 0.5594 1.9997 1.3820 47 1 2.1318 1.5729 2.0946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424123531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:31 Heat of formation + Delta-G solvation = -65.276343 kcal Electronic energy + Delta-G solvation = -23486.657931 eV Core-core repulsion = 20281.993222 eV Total energy + Delta-G solvation = -3204.664710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.44562 -38.25045 -35.54087 -35.21523 -32.92450 -32.67602 -30.96696 -29.87612 -27.51214 -26.35805 -25.10677 -23.98965 -22.43972 -21.36633 -20.40265 -20.10799 -18.48509 -17.41518 -16.38304 -16.18173 -15.55397 -14.88825 -14.85443 -14.72826 -14.44966 -14.10113 -13.95544 -13.55314 -13.37319 -13.12841 -12.82967 -12.73884 -12.37929 -12.21388 -12.11883 -11.89526 -11.59399 -11.29461 -11.13771 -11.09827 -11.01903 -10.84657 -10.65189 -10.60775 -10.46801 -10.33368 -9.97217 -9.83988 -9.24757 -9.14300 -8.48689 -8.44315 -8.14371 -6.08898 -4.11785 2.96456 3.17695 3.25820 3.33961 3.38008 4.39120 4.43180 4.58631 4.63478 4.79658 4.88832 5.02415 5.12922 5.17014 5.23108 5.27144 5.27977 5.37238 5.45713 5.48705 5.56801 5.64451 5.68665 5.77709 5.78662 5.84456 5.89091 5.91399 5.95002 6.00984 6.13351 6.15820 6.23963 6.30312 6.37154 6.54608 6.81198 6.88413 7.41264 7.52045 7.60227 7.66372 7.88475 7.92778 8.31383 8.50825 8.94422 9.53198 11.02002 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028912 B = 0.003588 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.214044 B = 7802.415776 C = 8092.229257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.084 4.084 4 H 0.064 0.936 5 C -0.113 4.113 6 C -0.131 4.131 7 C 0.101 3.899 8 N -0.607 5.607 9 C 0.524 3.476 10 O -0.540 6.540 11 C 0.072 3.928 12 H 0.097 0.903 13 N -0.832 5.832 14 C -0.138 4.138 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.118 3.882 25 C -0.131 4.131 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.353 0.647 38 H 0.345 0.655 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.261 0.739 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.172 -9.570 -8.129 20.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.102 4.102 4 H 0.082 0.918 5 C -0.150 4.150 6 C -0.169 4.169 7 C -0.022 4.022 8 N -0.341 5.341 9 C 0.313 3.687 10 O -0.416 6.416 11 C -0.043 4.043 12 H 0.114 0.886 13 N -0.364 5.364 14 C -0.178 4.178 15 C -0.012 4.012 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.006 4.006 25 C -0.169 4.169 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.783 -10.236 -7.823 21.157 hybrid contribution 1.008 1.872 -0.150 2.131 sum -15.775 -8.364 -7.973 19.555 Atomic orbital electron populations 1.21862 0.96137 1.01364 1.01842 1.21719 0.95716 0.96740 1.01879 1.20127 0.95823 0.95956 0.98323 0.91782 1.21152 0.95432 0.97045 1.01382 1.21764 1.02002 0.95549 0.97587 1.22142 0.94420 0.99418 0.86185 1.47671 1.06517 1.73815 1.06136 1.20899 0.91075 0.74427 0.82331 1.90613 1.63412 1.49266 1.38282 1.21569 0.90696 0.98014 0.94029 0.88574 1.58784 1.17920 1.57199 1.02463 1.22385 1.00847 0.93097 1.01446 1.19097 0.87348 0.97480 0.97289 1.21218 0.91597 0.93190 1.50045 0.92687 1.25011 0.97130 0.97010 0.95173 1.69960 1.02586 1.30460 1.50189 0.86539 0.78966 0.84797 0.77739 1.19759 1.20958 1.20942 1.21354 0.80912 0.96061 1.02273 1.21323 1.01266 0.96254 0.98058 0.93057 0.92392 0.92897 0.92188 0.92070 0.91398 0.91851 0.90452 0.91682 0.88997 0.91523 0.83162 0.84162 0.92541 0.92692 0.96425 0.96396 0.92950 0.91135 0.90097 0.90933 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.62 37.16 0.36 -0.80 16 2 C -0.12 -1.03 5.27 -26.73 -0.14 -1.17 16 3 C -0.08 -0.77 1.67 -93.68 -0.16 -0.92 16 4 H 0.06 0.55 7.32 -51.93 -0.38 0.17 16 5 C -0.11 -1.09 4.93 -28.01 -0.14 -1.23 16 6 C -0.13 -1.22 5.70 -27.30 -0.16 -1.38 16 7 C 0.10 1.19 5.26 -2.94 -0.02 1.18 16 8 N -0.61 -8.30 2.24 -172.47 -0.39 -8.69 16 9 C 0.52 8.97 6.83 -10.99 -0.08 8.90 16 10 O -0.54 -10.78 15.71 5.56 0.09 -10.70 16 11 C 0.07 1.25 2.36 -68.86 -0.16 1.09 16 12 H 0.10 1.59 6.22 -51.93 -0.32 1.27 16 13 N -0.83 -14.66 8.98 -5.65 -0.05 -14.71 16 14 C -0.14 -2.75 4.61 -26.73 -0.12 -2.87 16 15 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 16 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 20 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.12 1.40 5.43 -4.04 -0.02 1.38 16 25 C -0.13 -1.39 4.82 -28.58 -0.14 -1.53 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.45 6.38 -51.93 -0.33 0.11 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.47 7.82 -51.92 -0.41 0.06 16 30 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.07 0.80 7.48 -51.93 -0.39 0.42 16 32 H 0.06 0.55 7.64 -51.93 -0.40 0.16 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.55 7.31 -51.93 -0.38 0.17 16 35 H 0.09 1.18 5.17 -51.93 -0.27 0.91 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.35 6.21 7.55 -39.29 -0.30 5.91 16 38 H 0.35 6.20 8.56 -39.29 -0.34 5.87 16 39 H 0.06 1.08 7.38 -51.93 -0.38 0.70 16 40 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.07 0.70 8.05 -51.93 -0.42 0.29 16 45 H 0.08 1.10 7.24 -51.93 -0.38 0.72 16 46 H 0.07 0.68 6.13 -51.93 -0.32 0.36 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -30.47 355.18 -8.88 -39.34 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -8.28 Total: 8.34 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.31 Total: -9.98 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.30 Total: -48.59 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.47 -8.88 -39.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424123531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.932 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds