Wall clock time and date at job start Tue Mar 31 2020 05:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47175 * 2 1 4 4 H 1.08997 * 108.44906 * 307.30871 * 3 2 1 5 5 C 1.52570 * 108.51289 * 189.76886 * 3 2 1 6 6 C 1.50886 * 109.35589 * 153.72672 * 5 3 2 7 7 C 1.53948 * 110.09343 * 91.89306 * 6 5 3 8 8 N 1.47602 * 112.14034 * 319.43279 * 7 6 5 9 9 C 1.34774 * 118.64224 * 137.86716 * 8 7 6 10 10 O 1.21283 * 120.00035 * 174.57436 * 9 8 7 11 11 C 1.50696 * 120.00064 * 354.57761 * 9 8 7 12 12 H 1.08997 * 109.47455 * 324.56913 * 11 9 8 13 13 N 1.46905 * 109.47001 * 204.57214 * 11 9 8 14 14 C 1.53004 * 109.47303 * 84.57295 * 11 9 8 15 15 C 1.52997 * 109.47031 * 184.99591 * 14 11 9 16 16 C 1.50701 * 109.46969 * 179.97438 * 15 14 11 17 17 H 1.07996 * 119.99958 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99788 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00129 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99742 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47280 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46775 * 120.00466 * 20 18 16 23 23 H 1.48497 * 109.47445 * 240.00522 * 20 18 16 24 24 C 1.44666 * 122.54224 * 317.86020 * 8 7 6 25 25 C 1.47087 * 108.51562 * 65.00164 * 3 2 1 26 26 H 1.09001 * 109.47241 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46698 * 300.00042 * 1 2 3 28 28 H 1.08995 * 109.47101 * 59.99938 * 1 2 3 29 29 H 1.09008 * 109.47180 * 240.00011 * 2 1 3 30 30 H 1.08997 * 109.47613 * 120.00065 * 2 1 3 31 31 H 1.08995 * 109.49532 * 273.69245 * 5 3 2 32 32 H 1.09005 * 109.49116 * 33.76502 * 5 3 2 33 33 H 1.09001 * 109.36761 * 212.08209 * 6 5 3 34 34 H 1.08999 * 109.36172 * 331.69866 * 6 5 3 35 35 H 1.08992 * 108.94711 * 80.11930 * 7 6 5 36 36 H 1.09002 * 108.94504 * 198.74925 * 7 6 5 37 37 H 1.00903 * 111.00027 * 176.04273 * 13 11 9 38 38 H 1.00904 * 111.00151 * 300.00075 * 13 11 9 39 39 H 1.08995 * 109.46699 * 305.00184 * 14 11 9 40 40 H 1.08997 * 109.46804 * 65.00236 * 14 11 9 41 41 H 1.08994 * 109.47882 * 300.00433 * 15 14 11 42 42 H 1.09005 * 109.46637 * 60.00425 * 15 14 11 43 43 H 0.97006 * 119.99878 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.61629 * 330.84320 * 24 8 7 45 45 H 1.09003 * 109.32267 * 210.89386 * 24 8 7 46 46 H 1.08997 * 109.32796 * 304.31962 * 25 3 2 47 47 H 1.09005 * 109.32813 * 63.96635 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5641 1.9766 -0.8224 5 6 3.5457 1.4239 -0.2455 6 6 3.9653 2.7279 -0.8782 7 6 4.3785 3.7351 0.2103 8 7 3.4839 3.6846 1.3833 9 6 4.0289 3.7446 2.6145 10 8 3.3136 3.8044 3.5920 11 6 5.5271 3.7372 2.7764 12 1 5.9717 3.0953 2.0159 13 7 5.8730 3.2279 4.1102 14 6 6.0641 5.1613 2.6192 15 6 7.5934 5.1370 2.6593 16 6 8.1223 6.5396 2.5039 17 1 7.4363 7.3656 2.3885 18 6 9.4820 6.7682 2.5101 19 7 10.3173 5.7623 2.6511 20 14 10.1375 8.5068 2.3181 21 1 9.0006 9.4519 2.1776 22 1 10.9369 8.8694 3.5160 23 1 10.9961 8.5815 1.1088 24 6 2.0467 3.5737 1.2616 25 6 1.6400 2.0793 1.2641 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 4.0673 1.2955 0.7029 32 1 3.7953 0.5990 -0.9129 33 1 4.8087 2.5509 -1.5457 34 1 3.1327 3.1360 -1.4511 35 1 5.3959 3.5119 0.5313 36 1 4.3543 4.7404 -0.2103 37 1 6.8731 3.1524 4.2203 38 1 5.4722 3.8065 4.8333 39 1 5.7320 5.5716 1.6656 40 1 5.6892 5.7827 3.4325 41 1 7.9255 4.7267 3.6129 42 1 7.9683 4.5155 1.8461 43 1 11.2739 5.9232 2.6550 44 1 1.7214 4.0368 0.3301 45 1 1.5733 4.0800 2.1029 46 1 0.5594 1.9997 1.3820 47 1 2.1318 1.5729 2.0946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424123531.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:30 Heat of formation + Delta-G solvation = -83.597243 kcal Electronic energy + Delta-G solvation = -23487.452385 eV Core-core repulsion = 20281.993222 eV Total energy + Delta-G solvation = -3205.459164 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61494 -39.29680 -37.14448 -36.21803 -34.86693 -33.63281 -31.81046 -31.69698 -28.70262 -27.69720 -26.27503 -25.38745 -23.58191 -22.41481 -21.84851 -20.98367 -19.73103 -18.81787 -18.23153 -17.40112 -16.63012 -16.47543 -15.99551 -15.80624 -15.64139 -15.47640 -15.20216 -14.78265 -14.54984 -14.33157 -14.08123 -13.84038 -13.59661 -13.51893 -13.24654 -13.02549 -12.94130 -12.78668 -12.50748 -12.42653 -12.16595 -11.94201 -11.87178 -11.77037 -11.65802 -11.37456 -11.28662 -11.21675 -11.07998 -10.62906 -10.56503 -9.72584 -9.53885 -8.21730 -6.32039 1.38445 1.40183 1.51881 1.59849 2.02849 2.39795 3.11877 3.44565 3.67402 3.73432 3.83404 3.93465 4.00629 4.08790 4.18105 4.23751 4.35565 4.40443 4.52907 4.61445 4.63067 4.64498 4.72789 4.75336 4.85992 4.90049 4.99182 5.01921 5.06895 5.14017 5.21032 5.23485 5.25732 5.33879 5.39995 5.45927 5.52856 5.57820 5.64019 5.77063 5.79824 6.04060 6.20744 6.34725 6.45065 6.83056 7.19734 7.37105 8.89200 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028912 B = 0.003588 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.214044 B = 7802.415776 C = 8092.229257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.082 4.082 4 H 0.082 0.918 5 C -0.112 4.112 6 C -0.123 4.123 7 C 0.094 3.906 8 N -0.597 5.597 9 C 0.521 3.479 10 O -0.575 6.575 11 C 0.079 3.921 12 H 0.106 0.894 13 N -0.831 5.831 14 C -0.120 4.120 15 C 0.033 3.967 16 C -0.543 4.543 17 H 0.053 0.947 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.959 3.041 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.276 1.276 24 C 0.112 3.888 25 C -0.121 4.121 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.352 0.648 38 H 0.343 0.657 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.001 0.999 42 H 0.003 0.997 43 H 0.264 0.736 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.187 -9.198 -10.217 22.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.100 4.100 4 H 0.100 0.900 5 C -0.150 4.150 6 C -0.161 4.161 7 C -0.028 4.028 8 N -0.329 5.329 9 C 0.309 3.691 10 O -0.454 6.454 11 C -0.036 4.036 12 H 0.124 0.876 13 N -0.362 5.362 14 C -0.159 4.159 15 C -0.004 4.004 16 C -0.581 4.581 17 H 0.072 0.928 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.206 1.206 23 H -0.201 1.201 24 C -0.010 4.010 25 C -0.159 4.159 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.167 0.833 38 H 0.156 0.844 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.019 0.981 42 H 0.022 0.978 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -17.813 -9.872 -9.949 22.666 hybrid contribution 1.315 1.719 0.485 2.218 sum -16.497 -8.153 -9.464 20.693 Atomic orbital electron populations 1.21850 0.95320 1.01820 1.02076 1.21691 0.96413 0.96107 1.01645 1.20107 0.95564 0.96512 0.97813 0.89987 1.21157 0.95575 0.97889 1.00368 1.21747 1.03245 0.94384 0.96696 1.22334 0.93472 1.00897 0.86088 1.47720 1.07615 1.71976 1.05557 1.20769 0.90551 0.74637 0.83137 1.90594 1.63849 1.51290 1.39648 1.21484 0.91463 0.96500 0.94139 0.87603 1.58795 1.17767 1.57040 1.02619 1.22121 0.97854 0.94666 1.01306 1.18942 0.90035 0.95780 0.95679 1.21621 0.92072 0.94464 1.49982 0.92831 1.25854 0.97479 1.01107 0.94802 1.70067 1.02956 1.32582 1.50975 0.85492 0.78380 0.79882 0.77858 1.19049 1.20624 1.20119 1.21552 0.79488 0.97091 1.02902 1.21246 1.01832 0.94974 0.97853 0.92595 0.92850 0.91894 0.91220 0.93535 0.94095 0.90493 0.89115 0.89781 0.90357 0.90661 0.83307 0.84411 0.91680 0.94033 0.98080 0.97837 0.92711 0.88220 0.91980 0.89485 0.94633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.62 71.98 0.69 -1.27 16 2 C -0.12 -1.80 5.27 30.59 0.16 -1.64 16 3 C -0.08 -1.31 1.67 -12.78 -0.02 -1.33 16 4 H 0.08 1.08 7.32 -2.39 -0.02 1.06 16 5 C -0.11 -1.96 4.93 29.76 0.15 -1.81 16 6 C -0.12 -1.94 5.70 30.23 0.17 -1.77 16 7 C 0.09 2.07 5.26 86.49 0.45 2.52 16 8 N -0.60 -15.85 2.24 -817.98 -1.83 -17.68 16 9 C 0.52 17.99 6.83 87.66 0.60 18.59 16 10 O -0.57 -23.47 15.71 -3.04 -0.05 -23.52 16 11 C 0.08 2.79 2.36 44.17 0.10 2.90 16 12 H 0.11 3.54 6.22 -2.39 -0.01 3.52 16 13 N -0.83 -30.10 8.98 -171.80 -1.54 -31.65 16 14 C -0.12 -4.81 4.61 30.59 0.14 -4.67 16 15 C 0.03 1.62 4.74 29.85 0.14 1.76 16 16 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 17 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 18 C 0.01 0.34 5.46 84.66 0.46 0.80 16 19 N -0.93 -54.15 13.29 21.45 0.28 -53.87 16 20 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 C 0.11 2.53 5.43 87.36 0.47 3.01 16 25 C -0.12 -2.43 4.82 29.39 0.14 -2.29 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.72 6.38 -2.38 -0.02 0.71 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.91 7.82 -2.38 -0.02 0.89 16 30 H 0.05 0.82 8.13 -2.39 -0.02 0.80 16 31 H 0.04 0.94 7.48 -2.39 -0.02 0.93 16 32 H 0.08 1.15 7.64 -2.38 -0.02 1.13 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.06 7.31 -2.39 -0.02 1.04 16 35 H 0.08 1.95 5.17 -2.39 -0.01 1.94 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.35 12.79 7.55 -89.69 -0.68 12.11 16 38 H 0.34 12.73 8.56 -89.69 -0.77 11.96 16 39 H 0.06 2.48 7.38 -2.39 -0.02 2.46 16 40 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.00 0.05 6.87 -2.39 -0.02 0.03 16 42 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 43 H 0.26 14.54 8.31 -92.70 -0.77 13.76 16 44 H 0.10 1.68 8.05 -2.39 -0.02 1.67 16 45 H 0.06 1.66 7.24 -2.39 -0.02 1.65 16 46 H 0.09 1.50 6.13 -2.39 -0.01 1.49 16 47 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -65.65 355.18 2.30 -63.35 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: -0.49 Total: 32.89 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 3.90 Total: -14.90 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -3.09 Total: -103.20 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -65.65 2.30 -63.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424123531.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.252 kcal (2) G-P(sol) polarization free energy of solvation -65.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds