Wall clock time and date at job start Tue Mar 31 2020 05:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47513 * 2 1 4 4 H 1.08998 * 108.44593 * 307.31367 * 3 2 1 5 5 C 1.52563 * 108.51714 * 189.76667 * 3 2 1 6 6 C 1.50873 * 109.36150 * 153.73287 * 5 3 2 7 7 C 1.54300 * 110.23852 * 91.79677 * 6 5 3 8 8 N 1.47610 * 111.93924 * 319.70666 * 7 6 5 9 9 C 1.34775 * 118.63887 * 137.77326 * 8 7 6 10 10 O 1.21283 * 119.99555 * 179.72345 * 9 8 7 11 11 C 1.50700 * 120.00303 * 359.73261 * 9 8 7 12 12 H 1.08990 * 109.47465 * 39.99472 * 11 9 8 13 13 N 1.46901 * 109.46865 * 159.99804 * 11 9 8 14 14 C 1.53000 * 109.46738 * 279.99439 * 11 9 8 15 15 C 1.52997 * 109.47060 * 175.00110 * 14 11 9 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 11 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.44572 * 122.71230 * 317.48962 * 8 7 6 25 25 C 1.47097 * 108.50996 * 64.99989 * 3 2 1 26 26 H 1.09002 * 109.46846 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46738 * 299.99789 * 1 2 3 28 28 H 1.08993 * 109.47197 * 60.00017 * 1 2 3 29 29 H 1.09000 * 109.47037 * 239.99493 * 2 1 3 30 30 H 1.09006 * 109.47285 * 120.00312 * 2 1 3 31 31 H 1.09000 * 109.49146 * 273.70444 * 5 3 2 32 32 H 1.09002 * 109.49041 * 33.76760 * 5 3 2 33 33 H 1.09005 * 109.37239 * 212.07907 * 6 5 3 34 34 H 1.09002 * 109.36578 * 331.69337 * 6 5 3 35 35 H 1.08991 * 109.14413 * 199.01436 * 7 6 5 36 36 H 1.09001 * 108.95229 * 80.26872 * 7 6 5 37 37 H 1.00902 * 111.00138 * 60.00335 * 13 11 9 38 38 H 1.00908 * 110.99704 * 183.94920 * 13 11 9 39 39 H 1.09002 * 109.47398 * 295.00279 * 14 11 9 40 40 H 1.09001 * 109.47194 * 55.00459 * 14 11 9 41 41 H 1.09002 * 109.47153 * 300.00319 * 15 14 11 42 42 H 1.08998 * 109.47533 * 59.99948 * 15 14 11 43 43 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.45242 * 211.02925 * 24 8 7 45 45 H 1.08998 * 109.45457 * 330.95163 * 24 8 7 46 46 H 1.09000 * 109.32954 * 63.79615 * 25 3 2 47 47 H 1.09000 * 109.18744 * 304.22839 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5642 1.9766 -0.8224 5 6 3.5457 1.4239 -0.2454 6 6 3.9655 2.7278 -0.8779 7 6 4.3781 3.7406 0.2106 8 7 3.4838 3.6845 1.3836 9 6 4.0287 3.7448 2.6148 10 8 3.3164 3.7058 3.5957 11 6 5.5229 3.8609 2.7727 12 1 5.9162 4.5417 2.0179 13 7 5.8349 4.3803 4.1109 14 6 6.1627 2.4820 2.5988 15 6 7.6861 2.6184 2.6349 16 6 8.3164 1.2604 2.4630 17 1 7.6927 0.3873 2.3400 18 6 9.6892 1.1326 2.4619 19 7 10.4487 2.1959 2.6112 20 14 10.4704 -0.5509 2.2496 21 1 10.6932 -0.8146 0.8052 22 1 11.7708 -0.5870 2.9657 23 1 9.5682 -1.5893 2.8088 24 6 2.0471 3.5735 1.2661 25 6 1.6400 2.0793 1.2642 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 4.0673 1.2952 0.7030 32 1 3.7953 0.5990 -0.9128 33 1 4.8090 2.5508 -1.5453 34 1 3.1330 3.1360 -1.4510 35 1 4.3500 4.7465 -0.2081 36 1 5.3965 3.5207 0.5310 37 1 5.4805 3.7662 4.8288 38 1 6.8273 4.5281 4.2191 39 1 5.8374 1.8261 3.4064 40 1 5.8584 2.0583 1.6417 41 1 8.0114 3.2743 1.8273 42 1 7.9905 3.0421 3.5919 43 1 11.4145 2.1060 2.6100 44 1 1.5740 4.0774 2.1089 45 1 1.7218 4.0395 0.3360 46 1 2.1294 1.5709 2.0949 47 1 0.5590 1.9997 1.3790 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424123532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:34 Heat of formation + Delta-G solvation = -65.573594 kcal Electronic energy + Delta-G solvation = -23839.520562 eV Core-core repulsion = 20634.842962 eV Total energy + Delta-G solvation = -3204.677600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44487 -38.17035 -35.58180 -35.17004 -32.89750 -32.62466 -30.91781 -29.88468 -27.48388 -26.32580 -25.09773 -23.91447 -22.40989 -21.32911 -20.36253 -20.11962 -18.41592 -17.40444 -16.37569 -16.11689 -15.54547 -14.89961 -14.83402 -14.66254 -14.43096 -14.07977 -13.94452 -13.48055 -13.35077 -13.09399 -12.75176 -12.71797 -12.30642 -12.28644 -12.10403 -11.69577 -11.59980 -11.28528 -11.13677 -11.04981 -10.92661 -10.88142 -10.68900 -10.52608 -10.40630 -10.25524 -9.95310 -9.84735 -9.26003 -9.12671 -8.46466 -8.44064 -8.15063 -6.09061 -4.12057 2.97057 3.19092 3.26168 3.33308 3.36563 4.38624 4.50229 4.65587 4.69444 4.83514 4.94177 5.08663 5.19567 5.21616 5.26252 5.27426 5.32219 5.42334 5.50144 5.56693 5.60578 5.64064 5.71470 5.79897 5.82124 5.86276 5.93712 5.98374 6.03115 6.06150 6.18792 6.21013 6.29635 6.35341 6.45644 6.55140 6.82707 6.88713 7.41971 7.51320 7.60157 7.67013 7.88054 7.93349 8.30701 8.51904 8.93807 9.52898 11.01831 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015715 B = 0.004878 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.282800 B = 5738.289992 C = 6766.978561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.083 4.083 4 H 0.063 0.937 5 C -0.115 4.115 6 C -0.128 4.128 7 C 0.098 3.902 8 N -0.607 5.607 9 C 0.522 3.478 10 O -0.539 6.539 11 C 0.072 3.928 12 H 0.095 0.905 13 N -0.831 5.831 14 C -0.139 4.139 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.119 3.881 25 C -0.131 4.131 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.345 0.655 38 H 0.353 0.647 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.261 0.739 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.482 0.927 -8.026 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.101 4.101 4 H 0.081 0.919 5 C -0.153 4.153 6 C -0.166 4.166 7 C -0.024 4.024 8 N -0.341 5.341 9 C 0.311 3.689 10 O -0.415 6.415 11 C -0.043 4.043 12 H 0.113 0.887 13 N -0.363 5.363 14 C -0.179 4.179 15 C -0.012 4.012 16 C -0.560 4.560 17 H 0.072 0.928 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.004 4.004 25 C -0.169 4.169 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.138 1.609 -7.706 18.860 hybrid contribution 1.143 -1.872 -0.182 2.201 sum -15.995 -0.263 -7.888 17.837 Atomic orbital electron populations 1.21858 0.96198 1.01337 1.01736 1.21723 0.95610 0.96783 1.02022 1.20119 0.95913 0.95927 0.98166 0.91886 1.21172 0.95242 0.97050 1.01790 1.21776 1.01878 0.95513 0.97448 1.22235 0.94854 0.99021 0.86316 1.47667 1.06532 1.73773 1.06140 1.20926 0.90957 0.74634 0.82415 1.90615 1.63306 1.49489 1.38046 1.21533 0.90607 0.98155 0.94010 0.88692 1.58764 1.21371 1.53694 1.02454 1.22446 1.00296 0.93711 1.01443 1.19096 0.87319 0.97476 0.97319 1.21161 0.91399 0.93444 1.50035 0.92771 1.24999 0.97441 0.96619 0.95161 1.69952 1.04690 1.28523 1.50020 0.86606 0.78796 0.84495 0.78206 1.20612 1.21153 1.19906 1.21326 0.80863 0.96147 1.02089 1.21321 1.01191 0.96247 0.98175 0.93073 0.92446 0.92946 0.92128 0.92021 0.91052 0.91725 0.90378 0.91863 0.91951 0.88573 0.84214 0.83183 0.92768 0.92222 0.96394 0.96426 0.92894 0.90199 0.91210 0.91516 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.62 37.16 0.36 -0.93 16 2 C -0.12 -1.20 5.27 -26.73 -0.14 -1.34 16 3 C -0.08 -0.84 1.67 -93.68 -0.16 -1.00 16 4 H 0.06 0.59 7.33 -51.93 -0.38 0.20 16 5 C -0.12 -1.31 4.93 -28.02 -0.14 -1.44 16 6 C -0.13 -1.31 5.71 -27.12 -0.15 -1.47 16 7 C 0.10 1.17 5.51 -2.75 -0.02 1.15 16 8 N -0.61 -8.32 2.23 -172.32 -0.38 -8.71 16 9 C 0.52 8.94 6.87 -10.99 -0.08 8.86 16 10 O -0.54 -10.74 15.68 5.55 0.09 -10.65 16 11 C 0.07 1.25 2.34 -68.86 -0.16 1.09 16 12 H 0.10 1.58 6.88 -51.93 -0.36 1.22 16 13 N -0.83 -14.72 8.94 -5.66 -0.05 -14.77 16 14 C -0.14 -2.73 4.38 -26.73 -0.12 -2.85 16 15 C 0.03 0.60 4.74 -27.89 -0.13 0.47 16 16 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 20 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 24 C 0.12 1.43 5.38 -4.09 -0.02 1.41 16 25 C -0.13 -1.48 4.82 -28.58 -0.14 -1.62 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.48 6.38 -51.93 -0.33 0.15 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.56 7.82 -51.93 -0.41 0.16 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.07 1.00 6.59 -51.93 -0.34 0.66 16 32 H 0.06 0.70 7.64 -51.93 -0.40 0.30 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.56 7.31 -51.93 -0.38 0.18 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 1.30 4.41 -51.93 -0.23 1.07 16 37 H 0.34 6.20 8.58 -39.29 -0.34 5.86 16 38 H 0.35 6.22 7.55 -39.29 -0.30 5.92 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.12 5.80 -51.93 -0.30 0.82 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 44 H 0.08 1.07 7.30 -51.93 -0.38 0.69 16 45 H 0.07 0.69 8.06 -51.93 -0.42 0.27 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.07 0.71 6.13 -51.93 -0.32 0.40 16 LS Contribution 352.63 15.07 5.31 5.31 Total: -1.00 -30.19 352.63 -8.78 -38.97 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -8.15 Total: 9.39 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.30 Total: -10.57 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.30 Total: -48.56 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.19 -8.78 -38.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424123532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.605 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds