Wall clock time and date at job start Tue Mar 31 2020 05:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47513 * 2 1 4 4 H 1.08998 * 108.44593 * 307.31367 * 3 2 1 5 5 C 1.52563 * 108.51714 * 189.76667 * 3 2 1 6 6 C 1.50873 * 109.36150 * 153.73287 * 5 3 2 7 7 C 1.54300 * 110.23852 * 91.79677 * 6 5 3 8 8 N 1.47610 * 111.93924 * 319.70666 * 7 6 5 9 9 C 1.34775 * 118.63887 * 137.77326 * 8 7 6 10 10 O 1.21283 * 119.99555 * 179.72345 * 9 8 7 11 11 C 1.50700 * 120.00303 * 359.73261 * 9 8 7 12 12 H 1.08990 * 109.47465 * 39.99472 * 11 9 8 13 13 N 1.46901 * 109.46865 * 159.99804 * 11 9 8 14 14 C 1.53000 * 109.46738 * 279.99439 * 11 9 8 15 15 C 1.52997 * 109.47060 * 175.00110 * 14 11 9 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 11 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.44572 * 122.71230 * 317.48962 * 8 7 6 25 25 C 1.47097 * 108.50996 * 64.99989 * 3 2 1 26 26 H 1.09002 * 109.46846 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46738 * 299.99789 * 1 2 3 28 28 H 1.08993 * 109.47197 * 60.00017 * 1 2 3 29 29 H 1.09000 * 109.47037 * 239.99493 * 2 1 3 30 30 H 1.09006 * 109.47285 * 120.00312 * 2 1 3 31 31 H 1.09000 * 109.49146 * 273.70444 * 5 3 2 32 32 H 1.09002 * 109.49041 * 33.76760 * 5 3 2 33 33 H 1.09005 * 109.37239 * 212.07907 * 6 5 3 34 34 H 1.09002 * 109.36578 * 331.69337 * 6 5 3 35 35 H 1.08991 * 109.14413 * 199.01436 * 7 6 5 36 36 H 1.09001 * 108.95229 * 80.26872 * 7 6 5 37 37 H 1.00902 * 111.00138 * 60.00335 * 13 11 9 38 38 H 1.00908 * 110.99704 * 183.94920 * 13 11 9 39 39 H 1.09002 * 109.47398 * 295.00279 * 14 11 9 40 40 H 1.09001 * 109.47194 * 55.00459 * 14 11 9 41 41 H 1.09002 * 109.47153 * 300.00319 * 15 14 11 42 42 H 1.08998 * 109.47533 * 59.99948 * 15 14 11 43 43 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.45242 * 211.02925 * 24 8 7 45 45 H 1.08998 * 109.45457 * 330.95163 * 24 8 7 46 46 H 1.09000 * 109.32954 * 63.79615 * 25 3 2 47 47 H 1.09000 * 109.18744 * 304.22839 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5642 1.9766 -0.8224 5 6 3.5457 1.4239 -0.2454 6 6 3.9655 2.7278 -0.8779 7 6 4.3781 3.7406 0.2106 8 7 3.4838 3.6845 1.3836 9 6 4.0287 3.7448 2.6148 10 8 3.3164 3.7058 3.5957 11 6 5.5229 3.8609 2.7727 12 1 5.9162 4.5417 2.0179 13 7 5.8349 4.3803 4.1109 14 6 6.1627 2.4820 2.5988 15 6 7.6861 2.6184 2.6349 16 6 8.3164 1.2604 2.4630 17 1 7.6927 0.3873 2.3400 18 6 9.6892 1.1326 2.4619 19 7 10.4487 2.1959 2.6112 20 14 10.4704 -0.5509 2.2496 21 1 10.6932 -0.8146 0.8052 22 1 11.7708 -0.5870 2.9657 23 1 9.5682 -1.5893 2.8088 24 6 2.0471 3.5735 1.2661 25 6 1.6400 2.0793 1.2642 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 4.0673 1.2952 0.7030 32 1 3.7953 0.5990 -0.9128 33 1 4.8090 2.5508 -1.5453 34 1 3.1330 3.1360 -1.4510 35 1 4.3500 4.7465 -0.2081 36 1 5.3965 3.5207 0.5310 37 1 5.4805 3.7662 4.8288 38 1 6.8273 4.5281 4.2191 39 1 5.8374 1.8261 3.4064 40 1 5.8584 2.0583 1.6417 41 1 8.0114 3.2743 1.8273 42 1 7.9905 3.0421 3.5919 43 1 11.4145 2.1060 2.6100 44 1 1.5740 4.0774 2.1089 45 1 1.7218 4.0395 0.3360 46 1 2.1294 1.5709 2.0949 47 1 0.5590 1.9997 1.3790 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424123532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:33 Heat of formation + Delta-G solvation = -83.789635 kcal Electronic energy + Delta-G solvation = -23840.310469 eV Core-core repulsion = 20634.842962 eV Total energy + Delta-G solvation = -3205.467506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63311 -39.25855 -37.18054 -36.21191 -34.86245 -33.60953 -31.81026 -31.70248 -28.71914 -27.67703 -26.28022 -25.36491 -23.53797 -22.48869 -21.84923 -21.01426 -19.67564 -18.80975 -18.22954 -17.34870 -16.68109 -16.49560 -15.98227 -15.88981 -15.60205 -15.39762 -15.24320 -14.76483 -14.51848 -14.33193 -14.08854 -13.88901 -13.61244 -13.45566 -13.22543 -13.03816 -12.93381 -12.71620 -12.53675 -12.49019 -12.15375 -12.00205 -11.85301 -11.73240 -11.70295 -11.37561 -11.29584 -11.22116 -11.08615 -10.61808 -10.54855 -9.69024 -9.55437 -8.21504 -6.31683 1.38720 1.39903 1.50130 1.60631 2.04539 2.39554 3.12217 3.45419 3.67991 3.73644 3.83189 3.92951 4.06215 4.08864 4.18770 4.22258 4.35399 4.38316 4.50923 4.60334 4.61932 4.63487 4.73067 4.74944 4.84606 4.89768 4.97141 5.01481 5.06754 5.13761 5.20215 5.21608 5.25448 5.33263 5.40155 5.46510 5.51717 5.57900 5.63582 5.77356 5.81036 6.04416 6.20764 6.36094 6.45261 6.82881 7.21193 7.37361 8.89295 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015715 B = 0.004878 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.282800 B = 5738.289992 C = 6766.978561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.079 4.079 4 H 0.086 0.914 5 C -0.116 4.116 6 C -0.122 4.122 7 C 0.092 3.908 8 N -0.596 5.596 9 C 0.519 3.481 10 O -0.573 6.573 11 C 0.079 3.921 12 H 0.106 0.894 13 N -0.830 5.830 14 C -0.119 4.119 15 C 0.033 3.967 16 C -0.542 4.542 17 H 0.052 0.948 18 C 0.009 3.991 19 N -0.926 5.926 20 Si 0.956 3.044 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.270 1.270 24 C 0.115 3.885 25 C -0.123 4.123 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.342 0.658 38 H 0.352 0.648 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.004 0.996 42 H 0.001 0.999 43 H 0.264 0.736 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.030 0.970 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.693 0.615 -10.193 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.097 4.097 4 H 0.104 0.896 5 C -0.154 4.154 6 C -0.160 4.160 7 C -0.029 4.029 8 N -0.328 5.328 9 C 0.307 3.693 10 O -0.452 6.452 11 C -0.037 4.037 12 H 0.124 0.876 13 N -0.361 5.361 14 C -0.158 4.158 15 C -0.004 4.004 16 C -0.580 4.580 17 H 0.070 0.930 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.781 3.219 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.194 1.194 24 C -0.008 4.008 25 C -0.161 4.161 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.155 0.845 38 H 0.167 0.833 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.022 0.978 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.122 0.878 46 H 0.049 0.951 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.363 1.295 -9.913 20.908 hybrid contribution 1.511 -1.766 0.477 2.373 sum -16.852 -0.471 -9.436 19.320 Atomic orbital electron populations 1.21835 0.94958 1.01822 1.02231 1.21708 0.96688 0.96341 1.01366 1.20086 0.95164 0.96366 0.98079 0.89561 1.21183 0.95851 0.98134 1.00240 1.21772 1.03155 0.94224 0.96824 1.22417 0.93480 1.01058 0.85994 1.47711 1.07635 1.71949 1.05540 1.20792 0.90424 0.74825 0.83237 1.90596 1.63752 1.51473 1.39408 1.21459 0.91304 0.96785 0.94106 0.87608 1.58784 1.21214 1.53512 1.02623 1.22157 0.97434 0.95028 1.01212 1.18941 0.89962 0.95827 0.95683 1.21555 0.91968 0.94580 1.49916 0.92982 1.25818 0.98037 1.00352 0.94799 1.70060 1.05013 1.30602 1.50872 0.85578 0.77763 0.79936 0.78577 1.19524 1.20788 1.19448 1.21521 0.79429 0.96695 1.03115 1.21258 1.01863 0.95442 0.97553 0.92717 0.92688 0.91612 0.91506 0.94009 0.94496 0.91187 0.89613 0.89271 0.89512 0.90587 0.84491 0.83328 0.94383 0.91438 0.97806 0.98108 0.92715 0.91743 0.87816 0.95079 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.62 71.98 0.69 -1.50 16 2 C -0.12 -2.19 5.27 30.59 0.16 -2.03 16 3 C -0.08 -1.42 1.67 -12.77 -0.02 -1.44 16 4 H 0.09 1.23 7.33 -2.39 -0.02 1.21 16 5 C -0.12 -2.46 4.93 29.76 0.15 -2.32 16 6 C -0.12 -2.15 5.71 30.34 0.17 -1.97 16 7 C 0.09 2.01 5.51 86.61 0.48 2.49 16 8 N -0.60 -15.70 2.23 -817.49 -1.82 -17.53 16 9 C 0.52 17.87 6.87 87.66 0.60 18.47 16 10 O -0.57 -23.32 15.68 -3.04 -0.05 -23.37 16 11 C 0.08 2.77 2.34 44.17 0.10 2.88 16 12 H 0.11 3.50 6.88 -2.39 -0.02 3.48 16 13 N -0.83 -30.12 8.94 -171.81 -1.54 -31.65 16 14 C -0.12 -4.77 4.38 30.59 0.13 -4.64 16 15 C 0.03 1.63 4.74 29.85 0.14 1.77 16 16 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 17 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 18 C 0.01 0.48 5.46 84.65 0.46 0.94 16 19 N -0.93 -54.06 13.29 21.45 0.28 -53.77 16 20 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 C 0.12 2.56 5.38 87.38 0.47 3.03 16 25 C -0.12 -2.63 4.82 29.40 0.14 -2.49 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.82 6.38 -2.39 -0.02 0.80 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 1.10 7.82 -2.39 -0.02 1.08 16 30 H 0.04 0.89 8.13 -2.38 -0.02 0.87 16 31 H 0.04 1.04 6.59 -2.39 -0.02 1.02 16 32 H 0.07 1.40 7.64 -2.39 -0.02 1.38 16 33 H 0.09 1.42 8.14 -2.38 -0.02 1.41 16 34 H 0.09 1.16 7.31 -2.39 -0.02 1.14 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.99 4.41 -2.39 -0.01 1.98 16 37 H 0.34 12.74 8.58 -89.69 -0.77 11.97 16 38 H 0.35 12.79 7.55 -89.69 -0.68 12.11 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 2.59 5.80 -2.39 -0.01 2.58 16 41 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 42 H 0.00 0.03 6.87 -2.39 -0.02 0.02 16 43 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.06 1.67 7.30 -2.39 -0.02 1.65 16 45 H 0.10 1.64 8.06 -2.39 -0.02 1.62 16 46 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.09 1.60 6.13 -2.39 -0.01 1.58 16 Total: -1.00 -65.65 352.63 2.34 -63.32 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -0.49 Total: 34.06 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 3.92 Total: -16.38 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -3.07 Total: -102.96 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -65.65 2.34 -63.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424123532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.473 kcal (2) G-P(sol) polarization free energy of solvation -65.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds