Wall clock time and date at job start Tue Mar 31 2020 05:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47226 * 2 1 4 4 H 1.09007 * 108.44934 * 52.69068 * 3 2 1 5 5 C 1.52567 * 108.51689 * 170.23789 * 3 2 1 6 6 C 1.50876 * 109.36004 * 206.27056 * 5 3 2 7 7 C 1.53601 * 109.95080 * 268.01922 * 6 5 3 8 8 N 1.47603 * 112.34219 * 40.83328 * 7 6 5 9 9 C 1.34770 * 118.64343 * 222.03718 * 8 7 6 10 10 O 1.21284 * 119.99611 * 179.73228 * 9 8 7 11 11 C 1.50699 * 120.00651 * 359.73306 * 9 8 7 12 12 H 1.09000 * 109.46438 * 319.99712 * 11 9 8 13 13 N 1.46897 * 109.47303 * 200.00095 * 11 9 8 14 14 C 1.52994 * 109.47013 * 79.99298 * 11 9 8 15 15 C 1.52996 * 109.47119 * 185.00236 * 14 11 9 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.44579 * 122.70701 * 41.76012 * 8 7 6 25 25 C 1.47099 * 108.51613 * 295.00549 * 3 2 1 26 26 H 1.09004 * 109.46907 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46688 * 299.99752 * 1 2 3 28 28 H 1.08999 * 109.47253 * 59.99880 * 1 2 3 29 29 H 1.09007 * 109.46881 * 240.00155 * 2 1 3 30 30 H 1.08992 * 109.47385 * 120.00463 * 2 1 3 31 31 H 1.09011 * 109.48343 * 326.23222 * 5 3 2 32 32 H 1.08998 * 109.49057 * 86.29764 * 5 3 2 33 33 H 1.09001 * 109.37078 * 28.30013 * 6 5 3 34 34 H 1.09004 * 109.36931 * 147.92001 * 6 5 3 35 35 H 1.09006 * 108.94007 * 280.02702 * 7 6 5 36 36 H 1.09004 * 108.75356 * 161.52008 * 7 6 5 37 37 H 1.00906 * 110.99511 * 299.99380 * 13 11 9 38 38 H 1.00894 * 111.00198 * 63.95199 * 13 11 9 39 39 H 1.09004 * 109.46806 * 65.00499 * 14 11 9 40 40 H 1.09000 * 109.47828 * 305.00803 * 14 11 9 41 41 H 1.09004 * 109.47066 * 60.00422 * 15 14 11 42 42 H 1.08994 * 109.47405 * 300.00252 * 15 14 11 43 43 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.45255 * 29.56880 * 24 8 7 45 45 H 1.09006 * 109.45193 * 149.52102 * 24 8 7 46 46 H 1.09001 * 109.32915 * 55.67477 * 25 3 2 47 47 H 1.09006 * 109.32476 * 296.20776 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5641 1.9766 0.8225 5 6 3.5457 1.4239 0.2453 6 6 3.9655 2.7278 0.8779 7 6 4.3788 3.7294 -0.2108 8 7 3.4837 3.6845 -1.3836 9 6 4.0286 3.7440 -2.6148 10 8 3.3164 3.7042 -3.5957 11 6 5.5228 3.8600 -2.7729 12 1 5.9160 4.5415 -2.0185 13 7 5.8348 4.3785 -4.1114 14 6 6.1627 2.4814 -2.5979 15 6 7.6861 2.6179 -2.6340 16 6 8.3164 1.2599 -2.4623 17 1 7.6928 0.3866 -2.3400 18 6 9.6892 1.1313 -2.4675 19 7 10.4486 2.1946 -2.6168 20 14 10.4703 -0.5530 -2.2623 21 1 10.0225 -1.4438 -3.3630 22 1 11.9490 -0.4211 -2.3023 23 1 10.0607 -1.1332 -0.9582 24 6 2.0470 3.5735 -1.2660 25 6 1.6399 2.0794 -1.2641 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.7953 0.5989 0.9127 32 1 4.0672 1.2954 -0.7032 33 1 3.1330 3.1361 1.4510 34 1 4.8089 2.5508 1.5453 35 1 5.3954 3.5027 -0.5325 36 1 4.3589 4.7341 0.2115 37 1 5.4804 3.7639 -4.8289 38 1 5.4780 5.3149 -4.2287 39 1 5.8375 1.8249 -3.4049 40 1 5.8584 2.0584 -1.6405 41 1 8.0113 3.2745 -1.8270 42 1 7.9904 3.0408 -3.5914 43 1 11.4145 2.1043 -2.6201 44 1 1.7218 4.0395 -0.3359 45 1 1.5738 4.0771 -2.1091 46 1 0.5592 1.9997 -1.3820 47 1 2.1292 1.5710 -2.0949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424123533.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:37 Heat of formation + Delta-G solvation = -64.671479 kcal Electronic energy + Delta-G solvation = -23834.692065 eV Core-core repulsion = 20630.053584 eV Total energy + Delta-G solvation = -3204.638481 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.55211 -38.27445 -35.40848 -35.19069 -32.86658 -32.66672 -30.93787 -30.08240 -27.46014 -26.29373 -25.11810 -23.80102 -22.35188 -21.33706 -20.29683 -20.10947 -18.51646 -17.24307 -16.44111 -16.06667 -15.57828 -15.39434 -14.90599 -14.70114 -14.49119 -14.25504 -13.77032 -13.62705 -13.36791 -13.01639 -12.81539 -12.37422 -12.29506 -12.28629 -12.02793 -11.65910 -11.52656 -11.30762 -11.08246 -11.06041 -10.84291 -10.68858 -10.58166 -10.50749 -10.43011 -10.26310 -9.96498 -9.75635 -9.34218 -9.00277 -8.53975 -8.32650 -8.16620 -5.93307 -3.95406 2.80112 3.16918 3.35980 3.40783 3.43099 4.46877 4.50530 4.62381 4.67130 4.81737 4.91521 5.00154 5.05939 5.19303 5.21627 5.28842 5.39078 5.42150 5.45563 5.52581 5.57453 5.62030 5.68732 5.78885 5.82237 5.86063 5.91197 5.95589 6.00898 6.03448 6.17030 6.20136 6.29706 6.39281 6.48470 6.67293 6.76581 7.09608 7.37265 7.55553 7.75963 7.82879 7.96473 8.13780 8.35867 8.48854 9.12269 9.67656 11.17547 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015656 B = 0.004881 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.049946 B = 5735.234645 C = 6770.841669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.083 4.083 4 H 0.063 0.937 5 C -0.116 4.116 6 C -0.128 4.128 7 C 0.097 3.903 8 N -0.603 5.603 9 C 0.480 3.520 10 O -0.554 6.554 11 C 0.076 3.924 12 H 0.097 0.903 13 N -0.808 5.808 14 C -0.097 4.097 15 C 0.032 3.968 16 C -0.522 4.522 17 H 0.051 0.949 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.116 3.884 25 C -0.130 4.130 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.347 0.653 38 H 0.333 0.667 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.012 0.988 42 H 0.035 0.965 43 H 0.260 0.740 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.132 2.058 7.984 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.101 4.101 4 H 0.081 0.919 5 C -0.154 4.154 6 C -0.166 4.166 7 C -0.025 4.025 8 N -0.336 5.336 9 C 0.267 3.733 10 O -0.432 6.432 11 C -0.040 4.040 12 H 0.114 0.886 13 N -0.336 5.336 14 C -0.135 4.135 15 C -0.005 4.005 16 C -0.560 4.560 17 H 0.069 0.931 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.008 4.008 25 C -0.169 4.169 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.161 0.839 38 H 0.145 0.855 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.549 2.024 7.681 19.262 hybrid contribution -0.616 -0.933 0.138 1.126 sum -18.165 1.091 7.818 19.806 Atomic orbital electron populations 1.21859 0.96209 1.01361 1.01697 1.21721 0.95594 0.96744 1.02082 1.20117 0.95973 0.95965 0.98076 0.91906 1.21193 0.95177 0.97118 1.01862 1.21664 1.01962 0.95580 0.97435 1.22123 0.94957 0.99168 0.86288 1.47829 1.06485 1.72846 1.06436 1.22743 0.93368 0.74651 0.82545 1.90626 1.63723 1.50742 1.38139 1.21869 0.87361 1.01171 0.93609 0.88557 1.59010 1.65497 1.06489 1.02556 1.21721 1.00610 0.90844 1.00348 1.19004 0.86633 0.96484 0.98354 1.21226 0.91391 0.93724 1.49672 0.93096 1.24976 0.97461 0.96283 0.95486 1.69964 1.04519 1.28375 1.50304 0.86734 0.78170 0.84918 0.78590 1.20343 1.21333 1.20378 1.21355 0.81170 0.96270 1.01972 1.21307 1.01189 0.96127 0.98245 0.93036 0.92958 0.92493 0.91991 0.92066 0.91640 0.90984 0.91864 0.90199 0.88255 0.92016 0.83919 0.85540 0.92941 0.92551 0.96943 0.94700 0.93054 0.91232 0.90368 0.91047 0.91541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.62 37.16 0.36 -0.92 16 2 C -0.12 -1.19 5.27 -26.73 -0.14 -1.33 16 3 C -0.08 -0.83 1.67 -93.68 -0.16 -0.99 16 4 H 0.06 0.58 7.33 -51.93 -0.38 0.20 16 5 C -0.12 -1.31 4.93 -28.02 -0.14 -1.45 16 6 C -0.13 -1.30 5.71 -27.49 -0.16 -1.45 16 7 C 0.10 1.13 5.43 -3.13 -0.02 1.11 16 8 N -0.60 -7.95 2.25 -172.75 -0.39 -8.34 16 9 C 0.48 7.78 6.86 -10.99 -0.08 7.70 16 10 O -0.55 -10.39 15.68 5.55 0.09 -10.30 16 11 C 0.08 1.29 2.28 -68.87 -0.16 1.13 16 12 H 0.10 1.57 6.91 -51.93 -0.36 1.21 16 13 N -0.81 -13.96 8.44 -5.66 -0.05 -14.01 16 14 C -0.10 -1.95 4.38 -26.74 -0.12 -2.07 16 15 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 16 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 17 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 20 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 C 0.12 1.35 5.38 -4.09 -0.02 1.33 16 25 C -0.13 -1.46 4.81 -28.58 -0.14 -1.59 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.48 6.38 -51.93 -0.33 0.14 16 29 H 0.06 0.66 8.13 -51.92 -0.42 0.24 16 30 H 0.06 0.56 7.82 -51.93 -0.41 0.16 16 31 H 0.06 0.71 7.64 -51.92 -0.40 0.31 16 32 H 0.07 1.01 6.57 -51.93 -0.34 0.67 16 33 H 0.06 0.55 7.31 -51.93 -0.38 0.17 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.33 4.39 -51.93 -0.23 1.10 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.35 6.10 8.58 -39.29 -0.34 5.77 16 38 H 0.33 5.03 9.06 -39.30 -0.36 4.67 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.07 5.75 -51.93 -0.30 0.77 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 45 H 0.08 1.01 7.30 -51.93 -0.38 0.63 16 46 H 0.07 0.70 6.13 -51.93 -0.32 0.39 16 47 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -31.20 354.47 -8.86 -40.06 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.26 Total: 7.81 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -1.31 Total: -11.17 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.30 Total: -48.35 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.20 -8.86 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424123533.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.615 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds