Wall clock time and date at job start Tue Mar 31 2020 05:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47307 * 2 1 4 4 H 1.08998 * 108.44640 * 57.31057 * 3 2 1 5 5 C 1.52573 * 108.51259 * 174.99912 * 3 2 1 6 6 C 1.50876 * 109.35989 * 206.26173 * 5 3 2 7 7 C 1.53946 * 110.09941 * 268.11415 * 6 5 3 8 8 N 1.47609 * 112.13992 * 40.57014 * 7 6 5 9 9 C 1.34775 * 118.64242 * 222.12820 * 8 7 6 10 10 O 1.21282 * 120.00042 * 174.85028 * 9 8 7 11 11 C 1.50701 * 119.99845 * 354.85759 * 9 8 7 12 12 H 1.09001 * 109.47364 * 44.87403 * 11 9 8 13 13 N 1.46905 * 109.46876 * 164.87346 * 11 9 8 14 14 C 1.53001 * 109.46865 * 284.86915 * 11 9 8 15 15 C 1.52999 * 109.47024 * 175.00340 * 14 11 9 16 16 C 1.50695 * 109.46985 * 180.02562 * 15 14 11 17 17 H 1.07999 * 120.00247 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99946 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99987 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47062 * 60.00131 * 20 18 16 22 22 H 1.48500 * 109.46758 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.46993 * 299.99761 * 20 18 16 24 24 C 1.44582 * 122.71139 * 42.14556 * 8 7 6 25 25 C 1.47091 * 108.51244 * 299.76407 * 3 2 1 26 26 H 1.08997 * 109.47082 * 60.00126 * 1 2 3 27 27 H 1.08999 * 109.47205 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47038 * 299.99895 * 1 2 3 29 29 H 1.08998 * 109.47297 * 239.99620 * 2 1 3 30 30 H 1.09006 * 109.47169 * 120.00042 * 2 1 3 31 31 H 1.08996 * 109.49195 * 326.23404 * 5 3 2 32 32 H 1.09000 * 109.48866 * 86.29752 * 5 3 2 33 33 H 1.08997 * 109.36692 * 28.31306 * 6 5 3 34 34 H 1.09005 * 109.36514 * 147.92184 * 6 5 3 35 35 H 1.09003 * 108.94591 * 161.24650 * 7 6 5 36 36 H 1.08993 * 108.95411 * 279.97100 * 7 6 5 37 37 H 1.00899 * 110.99974 * 59.99751 * 13 11 9 38 38 H 1.00900 * 110.99785 * 183.94919 * 13 11 9 39 39 H 1.09002 * 109.47115 * 295.00304 * 14 11 9 40 40 H 1.08993 * 109.47180 * 55.00356 * 14 11 9 41 41 H 1.09002 * 109.47145 * 299.99945 * 15 14 11 42 42 H 1.09003 * 109.47138 * 59.99834 * 15 14 11 43 43 H 0.97003 * 119.99994 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.45246 * 29.29789 * 24 8 7 45 45 H 1.09004 * 109.44738 * 149.24141 * 24 8 7 46 46 H 1.08998 * 109.32807 * 296.20284 * 25 3 2 47 47 H 1.09002 * 109.32661 * 55.68477 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6285 1.9538 0.8702 5 6 3.5603 1.4187 0.1261 6 6 4.0298 2.7051 0.7596 7 6 4.3574 3.7424 -0.3297 8 7 3.3734 3.7236 -1.4298 9 6 3.8202 3.8181 -2.6979 10 8 3.0441 3.7115 -3.6238 11 6 5.2840 4.0563 -2.9652 12 1 5.8807 3.4053 -2.3263 13 7 5.5785 3.7632 -4.3743 14 6 5.6259 5.5173 -2.6660 15 6 7.1336 5.7295 -2.8171 16 6 7.4704 7.1683 -2.5218 17 1 6.6876 7.8620 -2.2528 18 6 8.7781 7.5993 -2.5950 19 7 9.7315 6.7545 -2.9221 20 14 9.1956 9.3830 -2.2297 21 1 8.7865 9.7126 -0.8408 22 1 10.6589 9.5889 -2.3762 23 1 8.4733 10.2652 -3.1811 24 6 1.9502 3.6082 -1.2032 25 6 1.5429 2.1136 -1.2108 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8605 0.5760 0.7487 32 1 4.0058 1.3170 -0.8635 33 1 3.2453 3.0964 1.4072 34 1 4.9228 2.5106 1.3537 35 1 4.3674 4.7357 0.1191 36 1 5.3456 3.5283 -0.7368 37 1 5.0372 4.3542 -4.9873 38 1 6.5654 3.8532 -4.5637 39 1 5.0961 6.1649 -3.3646 40 1 5.3253 5.7594 -1.6467 41 1 7.6635 5.0819 -2.1185 42 1 7.4342 5.4873 -3.8365 43 1 10.6515 7.0576 -2.9732 44 1 1.6995 4.0479 -0.2378 45 1 1.4131 4.1347 -1.9922 46 1 1.9652 1.6290 -2.0911 47 1 0.4562 2.0361 -1.2458 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424123534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:40 Heat of formation + Delta-G solvation = -64.489964 kcal Electronic energy + Delta-G solvation = -23493.571808 eV Core-core repulsion = 20288.941198 eV Total energy + Delta-G solvation = -3204.630610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.44400 -38.23925 -35.54558 -35.21287 -32.92460 -32.69102 -30.92894 -29.86094 -27.51560 -26.34539 -25.08044 -23.99103 -22.48744 -21.34289 -20.39341 -20.10933 -18.48336 -17.36186 -16.37535 -16.16116 -15.61962 -14.86578 -14.82933 -14.71653 -14.44435 -14.12409 -13.96134 -13.53862 -13.36206 -13.12914 -12.86261 -12.69362 -12.39009 -12.19252 -12.10276 -11.90584 -11.57336 -11.29211 -11.14591 -11.09040 -10.99901 -10.83234 -10.69817 -10.58670 -10.45897 -10.33562 -9.95823 -9.83354 -9.27307 -9.12015 -8.47151 -8.43631 -8.13726 -6.08710 -4.11866 2.97653 3.18320 3.28003 3.32967 3.35376 4.38913 4.43949 4.59992 4.63604 4.79990 4.89132 5.02848 5.13778 5.16391 5.22763 5.27343 5.27889 5.37317 5.46789 5.49044 5.57301 5.64971 5.69757 5.77453 5.79357 5.85816 5.89170 5.90807 5.94529 6.01636 6.13964 6.16017 6.24506 6.31518 6.38061 6.53800 6.82719 6.88200 7.41338 7.51621 7.60971 7.67999 7.88307 7.93871 8.31208 8.52437 8.93896 9.52966 11.02134 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028553 B = 0.003609 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.393523 B = 7755.905789 C = 8091.512887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.084 4.084 4 H 0.063 0.937 5 C -0.112 4.112 6 C -0.131 4.131 7 C 0.103 3.897 8 N -0.607 5.607 9 C 0.521 3.479 10 O -0.537 6.537 11 C 0.072 3.928 12 H 0.097 0.903 13 N -0.830 5.830 14 C -0.138 4.138 15 C 0.026 3.974 16 C -0.524 4.524 17 H 0.054 0.946 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.120 3.880 25 C -0.132 4.132 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.344 0.656 38 H 0.353 0.647 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.262 0.738 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.560 -11.307 8.432 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.102 4.102 4 H 0.082 0.918 5 C -0.150 4.150 6 C -0.169 4.169 7 C -0.019 4.019 8 N -0.341 5.341 9 C 0.310 3.690 10 O -0.413 6.413 11 C -0.043 4.043 12 H 0.115 0.885 13 N -0.362 5.362 14 C -0.178 4.178 15 C -0.011 4.011 16 C -0.562 4.562 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.004 4.004 25 C -0.170 4.170 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.157 0.843 38 H 0.168 0.832 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.069 -12.110 8.076 20.951 hybrid contribution 0.719 2.008 0.323 2.157 sum -14.350 -10.102 8.399 19.455 Atomic orbital electron populations 1.21876 0.96144 1.01359 1.01911 1.21703 0.95741 0.96754 1.01805 1.20119 0.95524 0.95842 0.98717 0.91814 1.21134 0.95122 0.97149 1.01547 1.21763 1.02093 0.95455 0.97593 1.22126 0.92423 0.99355 0.88033 1.47661 1.06525 1.73654 1.06275 1.20916 0.91149 0.74950 0.82031 1.90619 1.57942 1.49577 1.43153 1.21554 0.91735 0.98417 0.92584 0.88527 1.58753 1.12679 1.62210 1.02577 1.22395 1.01657 0.92470 1.01275 1.19086 0.87770 0.97082 0.97209 1.21143 0.92792 0.95097 1.47199 0.92806 1.25007 0.96512 0.97581 0.95160 1.69937 1.00519 1.34620 1.48122 0.86650 0.77245 0.85187 0.78898 1.20217 1.21217 1.20241 1.21338 0.81304 0.96111 1.01619 1.21336 1.00985 0.96155 0.98538 0.92255 0.93080 0.92893 0.92107 0.92235 0.91894 0.91488 0.91640 0.90460 0.91397 0.89247 0.84273 0.83218 0.92843 0.92390 0.96404 0.96457 0.92824 0.91162 0.90315 0.91428 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.52 37.16 0.35 -0.83 16 2 C -0.12 -1.03 5.25 -26.73 -0.14 -1.17 16 3 C -0.08 -0.77 1.71 -93.67 -0.16 -0.93 16 4 H 0.06 0.55 7.35 -51.93 -0.38 0.17 16 5 C -0.11 -1.09 4.93 -28.02 -0.14 -1.23 16 6 C -0.13 -1.23 5.71 -27.30 -0.16 -1.38 16 7 C 0.10 1.22 4.92 -2.94 -0.01 1.21 16 8 N -0.61 -8.30 2.24 -172.50 -0.39 -8.68 16 9 C 0.52 8.89 6.89 -10.99 -0.08 8.81 16 10 O -0.54 -10.67 15.72 5.56 0.09 -10.58 16 11 C 0.07 1.25 2.38 -68.86 -0.16 1.09 16 12 H 0.10 1.60 6.32 -51.93 -0.33 1.28 16 13 N -0.83 -14.71 8.89 -5.65 -0.05 -14.76 16 14 C -0.14 -2.72 4.65 -26.73 -0.12 -2.85 16 15 C 0.03 0.62 4.74 -27.89 -0.13 0.49 16 16 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 20 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 C 0.12 1.44 5.34 -4.06 -0.02 1.42 16 25 C -0.13 -1.42 4.75 -28.56 -0.14 -1.55 16 26 H 0.06 0.47 6.27 -51.93 -0.33 0.14 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.47 7.95 -51.93 -0.41 0.05 16 31 H 0.06 0.55 7.72 -51.93 -0.40 0.15 16 32 H 0.07 0.79 7.48 -51.93 -0.39 0.41 16 33 H 0.06 0.56 7.32 -51.93 -0.38 0.18 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.80 7.88 -51.93 -0.41 0.39 16 36 H 0.09 1.14 5.41 -51.93 -0.28 0.86 16 37 H 0.34 6.18 8.62 -39.29 -0.34 5.84 16 38 H 0.35 6.23 7.55 -39.29 -0.30 5.93 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.09 6.82 -51.93 -0.35 0.74 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 45 H 0.08 1.06 7.38 -51.93 -0.38 0.68 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 0.69 5.97 -51.93 -0.31 0.38 16 LS Contribution 354.36 15.07 5.34 5.34 Total: -1.00 -30.37 354.36 -8.88 -39.25 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.27 Total: 8.45 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.32 Total: -10.00 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.30 Total: -48.63 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.37 -8.88 -39.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424123534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.238 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds