Wall clock time and date at job start Tue Mar 31 2020 05:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47164 * 2 1 4 4 H 1.09000 * 109.46866 * 55.00338 * 3 2 1 5 5 C 1.52999 * 109.47000 * 295.00523 * 3 2 1 6 6 C 1.53006 * 109.46626 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47164 * 59.99702 * 6 5 3 8 8 C 1.53002 * 109.47415 * 300.00027 * 7 6 5 9 9 H 1.08996 * 109.46550 * 300.00288 * 8 7 6 10 10 N 1.46500 * 109.47089 * 179.97438 * 8 7 6 11 11 C 1.34776 * 119.99813 * 84.99864 * 10 8 7 12 12 O 1.21287 * 120.00196 * 0.02562 * 11 10 8 13 13 C 1.50693 * 120.00077 * 179.97438 * 11 10 8 14 14 H 1.09001 * 109.46855 * 40.00334 * 13 11 10 15 15 N 1.46907 * 109.47457 * 160.00027 * 13 11 10 16 16 C 1.53001 * 109.47674 * 280.00403 * 13 11 10 17 17 C 1.52999 * 109.47541 * 174.99891 * 16 13 11 18 18 C 1.50698 * 109.47161 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99682 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99754 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00093 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99672 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47312 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47055 * 120.00593 * 22 20 18 25 25 H 1.48500 * 109.47290 * 240.00333 * 22 20 18 26 26 C 1.52996 * 109.46972 * 59.99860 * 8 7 6 27 27 H 1.08992 * 109.47210 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46504 * 299.99791 * 1 2 3 29 29 H 1.08998 * 109.47276 * 59.99274 * 1 2 3 30 30 H 1.08998 * 109.46749 * 240.00669 * 2 1 3 31 31 H 1.08994 * 109.47067 * 120.00006 * 2 1 3 32 32 H 1.08993 * 109.47839 * 60.00073 * 5 3 2 33 33 H 1.09000 * 109.47160 * 299.99635 * 5 3 2 34 34 H 1.09001 * 109.46998 * 179.97438 * 6 5 3 35 35 H 1.09000 * 109.47050 * 299.99699 * 6 5 3 36 36 H 1.09000 * 109.47140 * 60.00051 * 7 6 5 37 37 H 1.09001 * 109.47230 * 179.97438 * 7 6 5 38 38 H 0.96993 * 120.00298 * 264.99793 * 10 8 7 39 39 H 1.00907 * 110.99515 * 60.00210 * 15 13 11 40 40 H 1.00900 * 110.99867 * 183.95500 * 15 13 11 41 41 H 1.09003 * 109.46907 * 295.00282 * 16 13 11 42 42 H 1.08998 * 109.46651 * 54.99284 * 16 13 11 43 43 H 1.08995 * 109.47010 * 300.00126 * 17 16 13 44 44 H 1.08997 * 109.46939 * 59.99759 * 17 16 13 45 45 H 0.97004 * 119.99399 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47054 * 60.00300 * 26 8 7 47 47 H 1.09001 * 109.46997 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1458 3.5689 -1.3075 7 6 3.6706 3.5702 -1.1821 8 6 4.0755 2.8860 0.1252 9 1 3.6412 3.4253 0.9670 10 7 5.5356 2.8867 0.2449 11 6 6.1689 3.9588 0.7605 12 8 5.5301 4.9229 1.1257 13 6 7.6708 3.9593 0.8841 14 1 8.1084 3.4979 -0.0011 15 7 8.1519 5.3422 1.0040 16 6 8.0805 3.1673 2.1274 17 6 9.6058 3.0618 2.1852 18 6 10.0092 2.2811 3.4095 19 1 9.2533 1.8989 4.0795 20 6 11.3433 2.0549 3.6741 21 7 12.2638 2.5208 2.8584 22 14 11.8435 1.0878 5.1920 23 1 10.6281 0.6778 5.9405 24 1 12.6025 -0.1206 4.7812 25 1 12.6974 1.9370 6.0609 26 6 3.5649 1.4438 0.1254 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.5490 2.1254 -1.3969 33 1 2.0698 1.5876 -2.1492 34 1 1.8578 4.0562 -2.2390 35 1 1.7116 4.1082 -0.4656 36 1 4.1049 3.0309 -2.0240 37 1 4.0345 4.5977 -1.1827 38 1 6.0465 2.1156 -0.0468 39 1 7.7601 5.7921 1.8178 40 1 9.1602 5.3738 1.0235 41 1 7.7175 3.6779 3.0194 42 1 7.6486 2.1677 2.0800 43 1 9.9687 2.5512 1.2933 44 1 10.0376 4.0614 2.2326 45 1 13.2023 2.3619 3.0449 46 1 3.9991 0.9045 -0.7165 47 1 3.8529 0.9565 1.0569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424124693.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:01 Heat of formation + Delta-G solvation = -89.574973 kcal Electronic energy + Delta-G solvation = -22578.783975 eV Core-core repulsion = 19373.065598 eV Total energy + Delta-G solvation = -3205.718377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.07424 -38.61629 -35.56125 -34.81672 -33.13379 -32.82957 -30.23918 -29.86579 -28.87261 -26.37460 -24.31833 -23.67237 -22.45792 -21.11627 -20.36935 -20.25642 -19.47698 -17.28002 -16.30888 -16.18344 -15.31979 -15.10834 -14.81566 -14.55034 -14.48135 -14.12081 -13.97501 -13.73953 -13.66083 -13.23780 -12.95153 -12.77731 -12.52365 -12.15978 -11.93556 -11.68701 -11.60852 -11.45289 -11.32850 -11.08687 -11.01099 -10.93042 -10.73395 -10.66220 -10.47864 -10.31158 -9.98623 -9.85886 -9.26045 -9.16328 -8.88603 -8.44560 -8.15761 -6.08931 -4.11921 2.99369 3.25801 3.30231 3.33907 3.37926 4.38761 4.39232 4.48127 4.60884 4.85048 4.88940 4.95557 5.11181 5.15551 5.21453 5.24847 5.27504 5.28506 5.35519 5.41588 5.46618 5.53517 5.61228 5.67054 5.74041 5.78990 5.82173 5.89489 5.92450 5.93910 6.06439 6.13839 6.17498 6.28887 6.30326 6.53412 6.66530 6.88565 7.46735 7.52800 7.62381 7.77130 7.88494 7.93011 8.31252 8.54021 8.94406 9.53064 11.02036 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020380 B = 0.003208 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.536642 B = 8724.876174 C = 9798.091296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.072 0.928 5 C -0.116 4.116 6 C -0.117 4.117 7 C -0.129 4.129 8 C 0.148 3.852 9 H 0.084 0.916 10 N -0.732 5.732 11 C 0.526 3.474 12 O -0.539 6.539 13 C 0.074 3.926 14 H 0.095 0.905 15 N -0.831 5.831 16 C -0.137 4.137 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.122 4.122 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.400 0.600 39 H 0.345 0.655 40 H 0.353 0.647 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.261 0.739 46 H 0.068 0.932 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.753 -3.341 -9.280 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.103 4.103 4 H 0.091 0.909 5 C -0.153 4.153 6 C -0.155 4.155 7 C -0.168 4.168 8 C 0.043 3.957 9 H 0.102 0.898 10 N -0.384 5.384 11 C 0.313 3.687 12 O -0.415 6.415 13 C -0.041 4.041 14 H 0.113 0.887 15 N -0.363 5.363 16 C -0.176 4.176 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.160 4.160 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.234 0.766 39 H 0.158 0.842 40 H 0.169 0.831 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.375 -2.491 -9.737 23.620 hybrid contribution 1.139 -1.311 1.580 2.348 sum -20.235 -3.802 -8.157 22.146 Atomic orbital electron populations 1.21821 0.95939 1.01451 1.01903 1.21563 0.95846 0.96185 1.02117 1.21130 0.94603 0.96096 0.98446 0.90949 1.21669 1.00592 0.95720 0.97341 1.21492 0.95376 0.96672 1.01926 1.21926 0.95759 1.01580 0.97511 1.20870 0.80325 0.96149 0.98349 0.89775 1.46083 1.07206 1.19599 1.65490 1.20875 0.90498 0.81793 0.75518 1.90624 1.68218 1.34018 1.48654 1.21482 0.90250 0.91661 1.00749 0.88688 1.58750 1.14142 1.14396 1.48987 1.22368 1.01463 0.98805 0.94998 1.19106 0.87558 0.97240 0.97429 1.21226 0.91861 1.34406 1.08615 0.92672 1.25018 0.96736 0.95889 0.96722 1.69964 1.00550 1.45756 1.36955 0.86531 0.78594 0.79813 0.83049 1.19751 1.20945 1.20943 1.21871 0.95677 0.95770 1.02716 0.92947 0.92774 0.92515 0.91964 0.91886 0.91756 0.91958 0.91886 0.91842 0.91933 0.91360 0.76601 0.84175 0.83134 0.92744 0.92577 0.96343 0.96410 0.92940 0.91350 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.12 -0.85 5.40 -26.73 -0.14 -0.99 16 3 C -0.08 -0.66 2.19 -90.62 -0.20 -0.86 16 4 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 5 C -0.12 -0.87 4.96 -26.73 -0.13 -1.00 16 6 C -0.12 -1.03 5.92 -26.73 -0.16 -1.18 16 7 C -0.13 -1.39 5.49 -26.73 -0.15 -1.54 16 8 C 0.15 1.71 2.45 -67.93 -0.17 1.54 16 9 H 0.08 1.15 7.58 -51.93 -0.39 0.76 16 10 N -0.73 -9.54 5.08 -53.81 -0.27 -9.81 16 11 C 0.53 8.79 7.04 -10.99 -0.08 8.71 16 12 O -0.54 -10.63 15.91 5.55 0.09 -10.54 16 13 C 0.07 1.27 3.21 -68.86 -0.22 1.05 16 14 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 15 N -0.83 -14.60 8.94 -5.65 -0.05 -14.65 16 16 C -0.14 -2.70 4.78 -26.73 -0.13 -2.82 16 17 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 18 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 22 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C -0.12 -1.11 4.67 -26.73 -0.12 -1.23 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.44 6.56 -51.93 -0.34 0.09 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 4.44 8.60 -40.82 -0.35 4.09 16 39 H 0.35 6.16 8.58 -39.29 -0.34 5.82 16 40 H 0.35 6.21 7.55 -39.29 -0.30 5.92 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -30.80 367.80 -9.38 -40.18 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -8.72 Total: 10.05 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.68 Total: -11.69 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.41 Total: -49.82 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.80 -9.38 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424124693.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.396 kcal (2) G-P(sol) polarization free energy of solvation -30.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds