Wall clock time and date at job start Tue Mar 31 2020 05:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47154 * 2 1 4 4 H 1.09002 * 109.47448 * 54.99700 * 3 2 1 5 5 C 1.53005 * 109.47019 * 294.99836 * 3 2 1 6 6 C 1.52998 * 109.47340 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47164 * 59.99924 * 6 5 3 8 8 C 1.53008 * 109.47363 * 300.00049 * 7 6 5 9 9 H 1.09001 * 109.46796 * 300.00526 * 8 7 6 10 10 N 1.46497 * 109.47335 * 179.97438 * 8 7 6 11 11 C 1.34777 * 119.99525 * 84.99977 * 10 8 7 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 8 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 8 14 14 H 1.09003 * 109.47353 * 320.27278 * 13 11 10 15 15 N 1.46901 * 109.47063 * 200.27767 * 13 11 10 16 16 C 1.53003 * 109.47432 * 80.27730 * 13 11 10 17 17 C 1.52996 * 109.47202 * 184.99824 * 16 13 11 18 18 C 1.50696 * 109.47057 * 180.02562 * 17 16 13 19 19 H 1.08004 * 120.00067 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00375 * 180.02562 * 18 17 16 21 21 N 1.31523 * 119.99722 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00539 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.47180 * 89.99688 * 22 20 18 24 24 H 1.48500 * 109.47205 * 210.00003 * 22 20 18 25 25 H 1.48505 * 109.46853 * 330.00016 * 22 20 18 26 26 C 1.52998 * 109.47372 * 175.00286 * 3 2 1 27 27 H 1.09000 * 109.46780 * 300.00249 * 1 2 3 28 28 H 1.08993 * 109.46819 * 60.00192 * 1 2 3 29 29 H 1.09008 * 109.46751 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47278 * 239.99904 * 2 1 3 31 31 H 1.09008 * 109.47267 * 119.99901 * 2 1 3 32 32 H 1.09003 * 109.46937 * 60.00155 * 5 3 2 33 33 H 1.08994 * 109.47191 * 300.00181 * 5 3 2 34 34 H 1.09008 * 109.46859 * 300.00217 * 6 5 3 35 35 H 1.08994 * 109.47717 * 180.02562 * 6 5 3 36 36 H 1.08998 * 109.47238 * 180.02562 * 7 6 5 37 37 H 1.08994 * 109.46965 * 60.00198 * 7 6 5 38 38 H 0.97000 * 120.00580 * 265.00723 * 10 8 7 39 39 H 1.00895 * 110.99940 * 299.99965 * 15 13 11 40 40 H 1.00907 * 111.00198 * 63.95463 * 15 13 11 41 41 H 1.08993 * 109.46630 * 305.00221 * 16 13 11 42 42 H 1.09001 * 109.46418 * 64.99919 * 16 13 11 43 43 H 1.09002 * 109.47174 * 300.00121 * 17 16 13 44 44 H 1.08999 * 109.47082 * 59.99947 * 17 16 13 45 45 H 0.96999 * 119.99800 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.47313 * 59.99331 * 26 3 2 47 47 H 1.09006 * 109.47016 * 299.99928 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1458 3.5688 -1.3078 7 6 3.6706 3.5701 -1.1823 8 6 4.0755 2.8861 0.1251 9 1 3.6411 3.4254 0.9669 10 7 5.5355 2.8868 0.2449 11 6 6.1687 3.9591 0.7604 12 8 5.5299 4.9232 1.1256 13 6 7.6702 3.9574 0.8894 14 1 8.0061 2.9719 1.2121 15 7 8.0777 4.9622 1.8805 16 6 8.2989 4.2924 -0.4646 17 6 9.8206 4.1689 -0.3650 18 6 10.4398 4.4996 -1.6985 19 1 9.8108 4.7703 -2.5337 20 6 11.8092 4.4554 -1.8527 21 7 12.5751 4.1253 -0.8357 22 14 12.5767 4.8646 -3.5058 23 1 12.8654 6.3197 -3.5710 24 1 13.8403 4.1015 -3.6673 25 1 11.6344 4.4977 -4.5934 26 6 3.5648 1.4443 0.1256 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.5489 2.1252 -1.3970 33 1 2.0699 1.5874 -2.1492 34 1 1.7115 4.1081 -0.4659 35 1 1.8571 4.0562 -2.2389 36 1 4.0343 4.5976 -1.1821 37 1 4.1049 3.0308 -2.0241 38 1 6.0466 2.1157 -0.0468 39 1 7.7778 5.8850 1.6041 40 1 7.7282 4.7280 2.7977 41 1 7.9267 3.5997 -1.2193 42 1 8.0347 5.3120 -0.7454 43 1 10.1927 4.8617 0.3898 44 1 10.0847 3.1494 -0.0841 45 1 13.5385 4.0939 -0.9443 46 1 3.9995 0.9052 -0.7161 47 1 3.8533 0.9570 1.0571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424124695.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:05 Heat of formation + Delta-G solvation = -88.615485 kcal Electronic energy + Delta-G solvation = -22597.916399 eV Core-core repulsion = 19392.239628 eV Total energy + Delta-G solvation = -3205.676771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.18355 -38.72037 -35.36171 -34.85337 -33.18459 -32.77119 -30.32341 -30.03302 -28.88415 -26.29503 -24.28426 -23.58602 -22.46323 -21.07252 -20.45897 -20.17851 -19.54274 -17.09819 -16.45587 -16.09927 -15.48233 -15.26643 -15.12440 -14.72905 -14.43554 -14.17452 -13.98869 -13.72279 -13.64567 -13.40823 -12.96818 -12.59860 -12.30534 -12.03017 -11.94479 -11.66645 -11.54342 -11.50511 -11.37067 -11.06056 -10.89182 -10.80749 -10.65458 -10.54439 -10.49367 -10.35873 -10.04312 -9.77825 -9.35164 -8.99646 -8.96276 -8.32774 -8.17654 -5.93028 -3.95114 2.82806 3.28848 3.35408 3.41570 3.44460 4.33930 4.43149 4.50489 4.56600 4.80100 4.85129 4.89475 4.97513 5.08966 5.13689 5.21049 5.24192 5.30416 5.37298 5.41779 5.42481 5.49104 5.56444 5.63013 5.68555 5.77722 5.85084 5.85890 5.88424 5.90460 6.03093 6.08519 6.14416 6.25331 6.45176 6.57964 6.68093 7.10709 7.41773 7.66008 7.77295 7.82596 7.97473 8.14375 8.38219 8.49586 9.12988 9.67974 11.17900 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023109 B = 0.003064 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.360135 B = 9134.718525 C = 9587.710243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.083 4.083 4 H 0.071 0.929 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.130 4.130 8 C 0.145 3.855 9 H 0.083 0.917 10 N -0.728 5.728 11 C 0.484 3.516 12 O -0.555 6.555 13 C 0.077 3.923 14 H 0.097 0.903 15 N -0.807 5.807 16 C -0.094 4.094 17 C 0.031 3.969 18 C -0.522 4.522 19 H 0.052 0.948 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.889 3.111 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.122 4.122 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.401 0.599 39 H 0.347 0.653 40 H 0.333 0.667 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.013 0.987 45 H 0.259 0.741 46 H 0.069 0.931 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.326 -8.140 2.216 24.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.102 4.102 4 H 0.090 0.910 5 C -0.154 4.154 6 C -0.154 4.154 7 C -0.169 4.169 8 C 0.040 3.960 9 H 0.101 0.899 10 N -0.379 5.379 11 C 0.270 3.730 12 O -0.433 6.433 13 C -0.038 4.038 14 H 0.115 0.885 15 N -0.335 5.335 16 C -0.133 4.133 17 C -0.006 4.006 18 C -0.560 4.560 19 H 0.070 0.930 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.717 3.283 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.160 4.160 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.236 0.764 39 H 0.161 0.839 40 H 0.145 0.855 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.031 0.969 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.822 -7.673 2.365 24.193 hybrid contribution -0.307 -0.011 -0.980 1.027 sum -23.129 -7.685 1.385 24.412 Atomic orbital electron populations 1.21823 0.95900 1.01475 1.01931 1.21561 0.95889 0.96153 1.02084 1.21125 0.94532 0.96099 0.98474 0.91040 1.21673 1.00623 0.95748 0.97329 1.21488 0.95351 0.96649 1.01957 1.21927 0.95772 1.01621 0.97555 1.20898 0.80588 0.96131 0.98381 0.89927 1.46259 1.07187 1.19720 1.64755 1.22724 0.92834 0.81970 0.75491 1.90635 1.68597 1.34140 1.49898 1.21839 0.86488 0.98283 0.97232 0.88535 1.59001 1.65191 1.05386 1.03915 1.21640 1.00632 1.00422 0.90561 1.19013 0.86893 0.97574 0.97115 1.21281 0.91660 1.46229 0.96845 0.93015 1.24995 0.97441 0.95506 0.96423 1.69980 1.04398 1.48644 1.30198 0.86650 0.78731 0.78392 0.84529 1.20723 1.21293 1.20016 1.21858 0.95776 0.95760 1.02580 0.92812 0.92451 0.92919 0.91896 0.91982 0.91724 0.91858 0.91951 0.91794 0.91415 0.91701 0.76425 0.83868 0.85521 0.92886 0.92921 0.94692 0.96899 0.93111 0.91243 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.16 0.36 -0.56 16 2 C -0.12 -0.78 5.40 -26.73 -0.14 -0.93 16 3 C -0.08 -0.62 2.19 -90.62 -0.20 -0.82 16 4 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 5 C -0.12 -0.88 4.96 -26.73 -0.13 -1.01 16 6 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 7 C -0.13 -1.45 5.49 -26.73 -0.15 -1.60 16 8 C 0.14 1.61 2.45 -67.95 -0.17 1.45 16 9 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 10 N -0.73 -9.09 5.08 -53.83 -0.27 -9.36 16 11 C 0.48 7.64 7.03 -10.98 -0.08 7.56 16 12 O -0.55 -10.26 15.91 5.55 0.09 -10.17 16 13 C 0.08 1.31 3.15 -68.86 -0.22 1.09 16 14 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 15 N -0.81 -13.81 8.44 -5.65 -0.05 -13.86 16 16 C -0.09 -1.91 4.78 -26.73 -0.13 -2.04 16 17 C 0.03 0.80 4.86 -27.89 -0.14 0.66 16 18 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 19 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 22 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.12 -1.03 4.67 -26.76 -0.12 -1.15 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 29 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.40 4.30 8.60 -40.82 -0.35 3.95 16 39 H 0.35 6.05 8.58 -39.29 -0.34 5.71 16 40 H 0.33 4.96 9.06 -39.29 -0.36 4.60 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 44 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 369.75 15.07 5.57 5.57 Total: -1.00 -31.90 369.75 -9.45 -41.35 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -8.83 Total: 8.11 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -1.68 Total: -12.14 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.42 Total: -49.54 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.90 -9.45 -41.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424124695.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.264 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds