Wall clock time and date at job start Tue Mar 31 2020 05:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47022 * 2 1 4 4 H 1.08998 * 109.47664 * 54.99998 * 3 2 1 5 5 C 1.53000 * 109.47148 * 294.99258 * 3 2 1 6 6 C 1.52997 * 109.47457 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47215 * 60.00025 * 6 5 3 8 8 C 1.52992 * 109.47030 * 300.00505 * 7 6 5 9 9 H 1.09004 * 109.46963 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47142 * 299.99339 * 8 7 6 11 11 C 1.34781 * 120.00245 * 275.00164 * 10 8 7 12 12 O 1.21275 * 119.99676 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99971 * 179.97438 * 11 10 8 14 14 H 1.09002 * 109.47083 * 320.00492 * 13 11 10 15 15 N 1.46898 * 109.47113 * 200.00293 * 13 11 10 16 16 C 1.53000 * 109.46801 * 80.00207 * 13 11 10 17 17 C 1.52997 * 109.47060 * 184.99876 * 16 13 11 18 18 C 1.50697 * 109.47466 * 180.02562 * 17 16 13 19 19 H 1.08001 * 119.99890 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00428 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99563 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00432 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46616 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47104 * 119.99966 * 22 20 18 25 25 H 1.48489 * 109.47200 * 240.00246 * 22 20 18 26 26 C 1.52997 * 109.47534 * 59.99690 * 8 7 6 27 27 H 1.09005 * 109.46710 * 60.00431 * 1 2 3 28 28 H 1.08998 * 109.46745 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46925 * 300.00214 * 1 2 3 30 30 H 1.09002 * 109.47377 * 239.99576 * 2 1 3 31 31 H 1.09005 * 109.46710 * 119.99569 * 2 1 3 32 32 H 1.08998 * 109.47443 * 300.00876 * 5 3 2 33 33 H 1.09004 * 109.46820 * 60.00090 * 5 3 2 34 34 H 1.08998 * 109.47236 * 180.02562 * 6 5 3 35 35 H 1.09010 * 109.47066 * 300.00467 * 6 5 3 36 36 H 1.08998 * 109.46884 * 180.02562 * 7 6 5 37 37 H 1.08998 * 109.46402 * 60.00132 * 7 6 5 38 38 H 0.97000 * 120.00041 * 95.00327 * 10 8 7 39 39 H 1.00901 * 110.99892 * 176.04953 * 15 13 11 40 40 H 1.00899 * 111.00057 * 300.00501 * 15 13 11 41 41 H 1.09002 * 109.47398 * 305.00045 * 16 13 11 42 42 H 1.09001 * 109.47194 * 65.00225 * 16 13 11 43 43 H 1.09002 * 109.47153 * 300.00319 * 17 16 13 44 44 H 1.08998 * 109.47533 * 59.99948 * 17 16 13 45 45 H 0.97002 * 119.99731 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.47260 * 59.99998 * 26 8 7 47 47 H 1.09006 * 109.47128 * 179.97438 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6354 2.1265 -1.3074 6 6 2.1458 3.5687 -1.3078 7 6 3.6707 3.5701 -1.1822 8 6 4.0753 2.8861 0.1251 9 1 5.1617 2.8867 0.2144 10 7 3.4917 3.6110 1.2565 11 6 4.1275 4.6823 1.7708 12 8 5.1827 5.0465 1.2967 13 6 3.5268 5.4283 2.9343 14 1 2.4478 5.5044 2.7991 15 7 4.1077 6.7757 3.0046 16 6 3.8262 4.6754 4.2322 17 6 3.1124 5.3637 5.3973 18 6 3.4078 4.6225 6.6758 19 1 4.0416 3.7483 6.6590 20 6 2.8697 5.0611 7.8670 21 7 2.0982 6.1261 7.8875 22 14 3.2353 4.1420 9.4517 23 1 4.1218 2.9868 9.1605 24 1 3.9106 5.0547 10.4088 25 1 1.9646 3.6542 10.0454 26 6 3.5648 1.4438 0.1255 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0699 1.5874 -2.1492 33 1 0.5490 2.1251 -1.3971 34 1 1.8572 4.0561 -2.2390 35 1 1.7115 4.1081 -0.4659 36 1 4.0343 4.5977 -1.1820 37 1 4.1049 3.0308 -2.0240 38 1 2.6475 3.3200 1.6355 39 1 3.6748 7.3184 3.7369 40 1 5.1079 6.7321 3.1299 41 1 3.4732 3.6478 4.1458 42 1 4.9011 4.6764 4.4131 43 1 3.4654 6.3913 5.4837 44 1 2.0375 5.3628 5.2165 45 1 1.7200 6.4349 8.7257 46 1 3.9992 0.9045 -0.7163 47 1 3.8536 0.9564 1.0568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424124697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:07 Heat of formation + Delta-G solvation = -105.236427 kcal Electronic energy + Delta-G solvation = -23070.657296 eV Core-core repulsion = 19864.259787 eV Total energy + Delta-G solvation = -3206.397509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37627 -39.56813 -37.06062 -35.62134 -34.83591 -33.71956 -31.68744 -31.17733 -29.75336 -28.05420 -25.77389 -24.61536 -23.36679 -22.58674 -21.63444 -21.29639 -19.99336 -18.90012 -18.09616 -17.02031 -16.65701 -16.49335 -16.02868 -15.93154 -15.58942 -15.49679 -15.00127 -14.70794 -14.55808 -14.26492 -14.10734 -13.94870 -13.55677 -13.43756 -13.10836 -12.98727 -12.93565 -12.69357 -12.55433 -12.49268 -12.25279 -11.95545 -11.81879 -11.72015 -11.68581 -11.34183 -11.29047 -10.99632 -10.85500 -10.69384 -10.56913 -9.99331 -9.63464 -8.21921 -6.32282 1.38353 1.39962 1.51751 1.66075 2.20244 2.39882 3.11860 3.67818 3.73996 3.78189 3.82502 3.87743 4.12080 4.17618 4.22223 4.25654 4.38745 4.47236 4.56402 4.58308 4.65762 4.68732 4.78317 4.81375 4.84012 4.85564 5.06504 5.08408 5.09954 5.15926 5.22695 5.27459 5.33346 5.37752 5.43248 5.46141 5.51713 5.62443 5.64161 5.66521 5.80205 6.07559 6.20934 6.47310 6.58255 6.83266 7.28919 7.36994 8.89100 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016250 B = 0.003910 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.699250 B = 7159.036487 C = 8246.799837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.088 4.088 4 H 0.062 0.938 5 C -0.108 4.108 6 C -0.116 4.116 7 C -0.125 4.125 8 C 0.144 3.856 9 H 0.065 0.935 10 N -0.711 5.711 11 C 0.527 3.473 12 O -0.573 6.573 13 C 0.080 3.920 14 H 0.106 0.894 15 N -0.830 5.830 16 C -0.119 4.119 17 C 0.030 3.970 18 C -0.544 4.544 19 H 0.054 0.946 20 C 0.006 3.994 21 N -0.927 5.927 22 Si 0.959 3.041 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.277 1.277 26 C -0.114 4.114 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.039 0.961 37 H 0.085 0.915 38 H 0.408 0.592 39 H 0.352 0.648 40 H 0.343 0.657 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.002 0.998 44 H 0.002 0.998 45 H 0.264 0.736 46 H 0.093 0.907 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.558 -11.789 -19.177 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.107 4.107 4 H 0.080 0.920 5 C -0.145 4.145 6 C -0.154 4.154 7 C -0.163 4.163 8 C 0.040 3.960 9 H 0.083 0.917 10 N -0.364 5.364 11 C 0.313 3.687 12 O -0.452 6.452 13 C -0.035 4.035 14 H 0.123 0.877 15 N -0.361 5.361 16 C -0.159 4.159 17 C -0.007 4.007 18 C -0.582 4.582 19 H 0.072 0.928 20 C -0.192 4.192 21 N -0.567 5.567 22 Si 0.784 3.216 23 H -0.190 1.190 24 H -0.206 1.206 25 H -0.202 1.202 26 C -0.152 4.152 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.245 0.755 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.073 0.927 46 H 0.112 0.888 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.187 -11.342 -20.167 23.241 hybrid contribution 0.096 -0.318 2.338 2.361 sum -2.091 -11.660 -17.829 21.406 Atomic orbital electron populations 1.21833 0.95755 1.01765 1.01924 1.21523 0.96019 0.95454 1.02292 1.21186 0.94474 0.96718 0.98313 0.91955 1.21605 1.01102 0.94509 0.97293 1.21479 0.94528 0.97708 1.01670 1.21853 0.97232 1.00061 0.97170 1.20992 0.97611 0.92054 0.85343 0.91662 1.46050 1.26119 1.29839 1.34381 1.20668 0.84245 0.80343 0.83397 1.90606 1.24199 1.67575 1.62779 1.21413 1.00290 0.89846 0.91987 0.87662 1.58757 1.09965 1.12646 1.54725 1.22117 0.99869 0.99923 0.94027 1.18970 0.94668 0.95029 0.92062 1.21642 1.30127 1.12687 0.93742 0.92753 1.25859 0.94826 0.95883 1.02680 1.70072 1.33791 1.25124 1.27690 0.85488 0.78180 0.78736 0.79194 1.18993 1.20559 1.20213 1.21845 0.96247 0.93571 1.03515 0.92008 0.92523 0.93365 0.91088 0.92257 0.90895 0.91071 0.91487 0.93100 0.94196 0.89620 0.75519 0.83346 0.84379 0.91656 0.93820 0.97981 0.97985 0.92733 0.88838 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.67 71.98 0.70 -1.25 16 2 C -0.12 -1.45 5.40 30.59 0.17 -1.28 16 3 C -0.09 -1.25 2.02 -10.79 -0.02 -1.27 16 4 H 0.06 1.00 6.51 -2.39 -0.02 0.99 16 5 C -0.11 -1.42 4.96 30.59 0.15 -1.27 16 6 C -0.12 -1.98 5.77 30.59 0.18 -1.80 16 7 C -0.12 -2.50 5.60 30.59 0.17 -2.33 16 8 C 0.14 3.13 2.78 44.99 0.13 3.25 16 9 H 0.07 1.70 7.58 -2.38 -0.02 1.68 16 10 N -0.71 -17.86 4.23 -442.55 -1.87 -19.73 16 11 C 0.53 17.40 7.04 87.66 0.62 18.01 16 12 O -0.57 -22.61 15.91 -3.01 -0.05 -22.66 16 13 C 0.08 2.74 3.21 44.17 0.14 2.88 16 14 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 15 N -0.83 -29.39 8.94 -171.80 -1.54 -30.92 16 16 C -0.12 -4.72 4.78 30.59 0.15 -4.57 16 17 C 0.03 1.48 4.74 29.85 0.14 1.62 16 18 C -0.54 -29.99 9.11 25.60 0.23 -29.75 16 19 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 20 C 0.01 0.33 5.46 84.65 0.46 0.79 16 21 N -0.93 -54.42 13.29 21.45 0.28 -54.14 16 22 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 C -0.11 -1.79 4.89 30.59 0.15 -1.64 16 27 H 0.06 0.70 6.57 -2.38 -0.02 0.69 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.88 6.57 -2.38 -0.02 0.86 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.05 1.00 7.60 -2.38 -0.02 0.98 16 36 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.41 8.90 6.87 -92.71 -0.64 8.26 16 39 H 0.35 12.58 7.55 -89.69 -0.68 11.91 16 40 H 0.34 12.43 8.58 -89.69 -0.77 11.66 16 41 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.00 0.10 6.87 -2.39 -0.02 0.08 16 44 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 46 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -65.00 363.37 1.08 -63.92 By element: Atomic # 1 Polarization: 37.84 SS G_CDS: -1.13 Total: 36.71 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: 3.36 Total: -18.61 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -3.12 Total: -104.79 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -65.00 1.08 -63.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424124697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.320 kcal (2) G-P(sol) polarization free energy of solvation -65.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds