Wall clock time and date at job start Tue Mar 31 2020 05:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47164 * 2 1 4 4 H 1.09000 * 109.46866 * 55.00338 * 3 2 1 5 5 C 1.52999 * 109.47000 * 295.00523 * 3 2 1 6 6 C 1.53006 * 109.46626 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47164 * 59.99702 * 6 5 3 8 8 C 1.53002 * 109.47415 * 300.00027 * 7 6 5 9 9 H 1.08992 * 109.46974 * 180.02562 * 8 7 6 10 10 N 1.46499 * 109.46799 * 299.99847 * 8 7 6 11 11 C 1.34773 * 120.00433 * 275.00323 * 10 8 7 12 12 O 1.21284 * 119.99573 * 359.97438 * 11 10 8 13 13 C 1.50695 * 120.00416 * 180.02562 * 11 10 8 14 14 H 1.08998 * 109.47149 * 39.99227 * 13 11 10 15 15 N 1.46903 * 109.47314 * 159.99638 * 13 11 10 16 16 C 1.53003 * 109.46819 * 279.99735 * 13 11 10 17 17 C 1.53005 * 109.46840 * 175.00034 * 16 13 11 18 18 C 1.50706 * 109.46909 * 179.97438 * 17 16 13 19 19 H 1.08002 * 119.99949 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99745 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00407 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99849 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47359 * 89.99677 * 22 20 18 24 24 H 1.48494 * 109.47306 * 210.00042 * 22 20 18 25 25 H 1.48510 * 109.46924 * 329.99751 * 22 20 18 26 26 C 1.52996 * 109.46972 * 59.99860 * 8 7 6 27 27 H 1.09001 * 109.46504 * 299.99791 * 1 2 3 28 28 H 1.08998 * 109.47276 * 59.99274 * 1 2 3 29 29 H 1.08992 * 109.47210 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46749 * 240.00669 * 2 1 3 31 31 H 1.08994 * 109.47067 * 120.00006 * 2 1 3 32 32 H 1.08993 * 109.47839 * 60.00073 * 5 3 2 33 33 H 1.09000 * 109.47160 * 299.99635 * 5 3 2 34 34 H 1.09001 * 109.46998 * 179.97438 * 6 5 3 35 35 H 1.09000 * 109.47050 * 299.99699 * 6 5 3 36 36 H 1.09000 * 109.47140 * 60.00051 * 7 6 5 37 37 H 1.09001 * 109.47230 * 179.97438 * 7 6 5 38 38 H 0.97006 * 119.99801 * 94.99679 * 10 8 7 39 39 H 1.00894 * 110.99873 * 59.99880 * 15 13 11 40 40 H 1.00903 * 110.99475 * 183.95258 * 15 13 11 41 41 H 1.08997 * 109.46933 * 294.99680 * 16 13 11 42 42 H 1.08992 * 109.47155 * 54.99883 * 16 13 11 43 43 H 1.08997 * 109.47069 * 299.99562 * 17 16 13 44 44 H 1.08998 * 109.47499 * 59.99596 * 17 16 13 45 45 H 0.96994 * 120.00108 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47054 * 60.00300 * 26 8 7 47 47 H 1.09001 * 109.46997 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1458 3.5689 -1.3075 7 6 3.6706 3.5702 -1.1821 8 6 4.0755 2.8860 0.1252 9 1 5.1617 2.8873 0.2147 10 7 3.4919 3.6108 1.2567 11 6 4.1278 4.6821 1.7710 12 8 5.1834 5.0458 1.2973 13 6 3.5278 5.4273 2.9352 14 1 3.0976 4.7154 3.6396 15 7 4.5737 6.2099 3.6072 16 6 2.4328 6.3684 2.4287 17 6 1.7394 7.0321 3.6202 18 6 0.6613 7.9594 3.1212 19 1 0.4884 8.0652 2.0603 20 6 -0.1042 8.6728 4.0190 21 7 0.1060 8.5437 5.3108 22 14 -1.4409 9.8218 3.4005 23 1 -2.7196 9.0758 3.2830 24 1 -1.6094 10.9453 4.3567 25 1 -1.0564 10.3577 2.0699 26 6 3.5649 1.4438 0.1254 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.5490 2.1254 -1.3969 33 1 2.0698 1.5876 -2.1492 34 1 1.8578 4.0562 -2.2390 35 1 1.7116 4.1082 -0.4656 36 1 4.1049 3.0309 -2.0240 37 1 4.0345 4.5977 -1.1827 38 1 2.6477 3.3198 1.6357 39 1 4.9883 6.8777 2.9747 40 1 4.2104 6.6680 4.4296 41 1 2.8776 7.1349 1.7940 42 1 1.7023 5.7995 1.8537 43 1 1.2946 6.2656 4.2548 44 1 2.4700 7.6009 4.1952 45 1 -0.4323 9.0458 5.9423 46 1 3.9991 0.9045 -0.7165 47 1 3.8529 0.9565 1.0569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424124698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:11 Heat of formation + Delta-G solvation = -86.112774 kcal Electronic energy + Delta-G solvation = -23209.222147 eV Core-core repulsion = 20003.653902 eV Total energy + Delta-G solvation = -3205.568245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.26984 -38.49274 -35.50099 -34.66366 -32.87948 -32.75500 -30.32355 -29.85425 -28.97426 -26.41041 -24.22128 -23.70755 -22.52349 -21.00183 -20.88841 -19.90195 -19.03857 -17.34202 -16.23449 -15.90108 -15.71842 -15.11113 -14.73765 -14.62834 -14.42790 -14.09207 -13.90885 -13.61342 -13.35407 -13.12243 -12.93347 -12.73402 -12.28109 -12.17793 -12.12814 -11.85902 -11.65711 -11.54935 -11.24641 -11.06993 -11.00287 -10.91589 -10.68326 -10.61699 -10.24953 -10.07539 -9.97794 -9.87028 -9.26823 -9.16834 -8.85205 -8.43897 -8.15395 -6.08427 -4.11469 3.01550 3.26736 3.33648 3.36181 3.38048 4.39386 4.44552 4.50746 4.57044 4.92938 4.97025 5.04020 5.17036 5.19894 5.23320 5.28010 5.28972 5.31220 5.45284 5.49435 5.51323 5.60397 5.61926 5.72703 5.79700 5.81478 5.86343 5.88448 6.02453 6.05948 6.11435 6.21887 6.24234 6.30356 6.34645 6.53963 6.70307 6.88948 7.47409 7.53126 7.62749 7.78752 7.88761 7.93575 8.31544 8.56089 8.94518 9.53448 11.02508 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.004201 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.655194 B = 6663.008573 C = 7656.071815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.091 4.091 4 H 0.071 0.929 5 C -0.114 4.114 6 C -0.121 4.121 7 C -0.129 4.129 8 C 0.148 3.852 9 H 0.085 0.915 10 N -0.727 5.727 11 C 0.526 3.474 12 O -0.540 6.540 13 C 0.074 3.926 14 H 0.094 0.906 15 N -0.831 5.831 16 C -0.136 4.136 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.054 0.946 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.121 4.121 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.399 0.601 39 H 0.345 0.655 40 H 0.353 0.647 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.261 0.739 46 H 0.075 0.925 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.435 -16.693 -11.201 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.155 4.155 3 C -0.109 4.109 4 H 0.089 0.911 5 C -0.151 4.151 6 C -0.158 4.158 7 C -0.168 4.168 8 C 0.043 3.957 9 H 0.103 0.897 10 N -0.381 5.381 11 C 0.313 3.687 12 O -0.416 6.416 13 C -0.042 4.042 14 H 0.112 0.888 15 N -0.363 5.363 16 C -0.176 4.176 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.159 4.159 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.234 0.766 39 H 0.158 0.842 40 H 0.168 0.832 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.534 -17.064 -11.260 20.941 hybrid contribution -1.912 1.370 -0.298 2.370 sum 2.622 -15.694 -11.558 19.666 Atomic orbital electron populations 1.21833 0.95835 1.01411 1.02208 1.21554 0.95996 0.96172 1.01826 1.21211 0.95106 0.96052 0.98547 0.91053 1.21636 1.00731 0.95728 0.96997 1.21516 0.95591 0.96567 1.02157 1.21908 0.96297 1.01610 0.96996 1.20845 0.98557 0.90520 0.85796 0.89732 1.46123 1.26141 1.31130 1.34663 1.20860 0.84196 0.79670 0.84017 1.90621 1.22599 1.66559 1.61861 1.21477 0.92117 0.96676 0.93889 0.88783 1.58744 1.32895 1.33071 1.11542 1.22359 0.96230 0.97694 1.01272 1.19104 0.95004 0.95309 0.91880 1.21179 1.17207 1.24823 0.92918 0.92754 1.25003 0.97452 0.96935 0.94865 1.69946 1.40316 1.42018 1.00939 0.86598 0.82170 0.80584 0.78698 1.20621 1.21141 1.19890 1.21872 0.95735 0.95563 1.02687 0.92520 0.92464 0.93035 0.92133 0.92032 0.91725 0.92167 0.92153 0.91462 0.91529 0.91418 0.76589 0.84184 0.83156 0.92760 0.92645 0.96374 0.96417 0.92891 0.90644 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.12 -0.87 5.40 -26.73 -0.14 -1.01 16 3 C -0.09 -0.75 2.02 -90.62 -0.18 -0.93 16 4 H 0.07 0.65 6.51 -51.93 -0.34 0.31 16 5 C -0.11 -0.98 4.96 -26.73 -0.13 -1.11 16 6 C -0.12 -1.27 5.77 -26.73 -0.15 -1.42 16 7 C -0.13 -1.45 5.60 -26.73 -0.15 -1.60 16 8 C 0.15 1.67 2.78 -67.93 -0.19 1.48 16 9 H 0.08 1.10 7.57 -51.93 -0.39 0.70 16 10 N -0.73 -9.36 4.23 -53.81 -0.23 -9.58 16 11 C 0.53 8.71 7.04 -10.99 -0.08 8.63 16 12 O -0.54 -10.57 15.91 5.55 0.09 -10.48 16 13 C 0.07 1.26 3.21 -68.86 -0.22 1.04 16 14 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 15 N -0.83 -14.57 8.94 -5.65 -0.05 -14.62 16 16 C -0.14 -2.67 4.78 -26.73 -0.13 -2.80 16 17 C 0.02 0.59 4.74 -27.88 -0.13 0.45 16 18 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 22 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 C -0.12 -1.04 4.89 -26.73 -0.13 -1.17 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.55 6.56 -51.93 -0.34 0.21 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.81 7.60 -51.93 -0.39 0.42 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.40 4.56 6.87 -40.82 -0.28 4.28 16 39 H 0.34 6.15 8.58 -39.29 -0.34 5.81 16 40 H 0.35 6.20 7.55 -39.29 -0.30 5.90 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -30.47 363.37 -9.23 -39.70 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -8.54 Total: 10.90 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -1.69 Total: -12.34 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.46 Total: -49.50 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.47 -9.23 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424124698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.413 kcal (2) G-P(sol) polarization free energy of solvation -30.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds