Wall clock time and date at job start Tue Mar 31 2020 05:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47164 * 2 1 4 4 H 1.09000 * 109.46866 * 55.00338 * 3 2 1 5 5 C 1.52999 * 109.47000 * 295.00523 * 3 2 1 6 6 C 1.53006 * 109.46626 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47164 * 59.99702 * 6 5 3 8 8 C 1.53002 * 109.47415 * 300.00027 * 7 6 5 9 9 H 1.08992 * 109.46974 * 180.02562 * 8 7 6 10 10 N 1.46499 * 109.46799 * 299.99847 * 8 7 6 11 11 C 1.34773 * 120.00433 * 275.00323 * 10 8 7 12 12 O 1.21284 * 119.99573 * 359.97438 * 11 10 8 13 13 C 1.50695 * 120.00416 * 180.02562 * 11 10 8 14 14 H 1.08998 * 109.47149 * 39.99227 * 13 11 10 15 15 N 1.46903 * 109.47314 * 159.99638 * 13 11 10 16 16 C 1.53003 * 109.46819 * 279.99735 * 13 11 10 17 17 C 1.53005 * 109.46840 * 175.00034 * 16 13 11 18 18 C 1.50706 * 109.46909 * 179.97438 * 17 16 13 19 19 H 1.08002 * 119.99949 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99745 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00407 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99849 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47359 * 89.99677 * 22 20 18 24 24 H 1.48494 * 109.47306 * 210.00042 * 22 20 18 25 25 H 1.48510 * 109.46924 * 329.99751 * 22 20 18 26 26 C 1.52996 * 109.46972 * 59.99860 * 8 7 6 27 27 H 1.09001 * 109.46504 * 299.99791 * 1 2 3 28 28 H 1.08998 * 109.47276 * 59.99274 * 1 2 3 29 29 H 1.08992 * 109.47210 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46749 * 240.00669 * 2 1 3 31 31 H 1.08994 * 109.47067 * 120.00006 * 2 1 3 32 32 H 1.08993 * 109.47839 * 60.00073 * 5 3 2 33 33 H 1.09000 * 109.47160 * 299.99635 * 5 3 2 34 34 H 1.09001 * 109.46998 * 179.97438 * 6 5 3 35 35 H 1.09000 * 109.47050 * 299.99699 * 6 5 3 36 36 H 1.09000 * 109.47140 * 60.00051 * 7 6 5 37 37 H 1.09001 * 109.47230 * 179.97438 * 7 6 5 38 38 H 0.97006 * 119.99801 * 94.99679 * 10 8 7 39 39 H 1.00894 * 110.99873 * 59.99880 * 15 13 11 40 40 H 1.00903 * 110.99475 * 183.95258 * 15 13 11 41 41 H 1.08997 * 109.46933 * 294.99680 * 16 13 11 42 42 H 1.08992 * 109.47155 * 54.99883 * 16 13 11 43 43 H 1.08997 * 109.47069 * 299.99562 * 17 16 13 44 44 H 1.08998 * 109.47499 * 59.99596 * 17 16 13 45 45 H 0.96994 * 120.00108 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47054 * 60.00300 * 26 8 7 47 47 H 1.09001 * 109.46997 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.1458 3.5689 -1.3075 7 6 3.6706 3.5702 -1.1821 8 6 4.0755 2.8860 0.1252 9 1 5.1617 2.8873 0.2147 10 7 3.4919 3.6108 1.2567 11 6 4.1278 4.6821 1.7710 12 8 5.1834 5.0458 1.2973 13 6 3.5278 5.4273 2.9352 14 1 3.0976 4.7154 3.6396 15 7 4.5737 6.2099 3.6072 16 6 2.4328 6.3684 2.4287 17 6 1.7394 7.0321 3.6202 18 6 0.6613 7.9594 3.1212 19 1 0.4884 8.0652 2.0603 20 6 -0.1042 8.6728 4.0190 21 7 0.1060 8.5437 5.3108 22 14 -1.4409 9.8218 3.4005 23 1 -2.7196 9.0758 3.2830 24 1 -1.6094 10.9453 4.3567 25 1 -1.0564 10.3577 2.0699 26 6 3.5649 1.4438 0.1254 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 0.5490 2.1254 -1.3969 33 1 2.0698 1.5876 -2.1492 34 1 1.8578 4.0562 -2.2390 35 1 1.7116 4.1082 -0.4656 36 1 4.1049 3.0309 -2.0240 37 1 4.0345 4.5977 -1.1827 38 1 2.6477 3.3198 1.6357 39 1 4.9883 6.8777 2.9747 40 1 4.2104 6.6680 4.4296 41 1 2.8776 7.1349 1.7940 42 1 1.7023 5.7995 1.8537 43 1 1.2946 6.2656 4.2548 44 1 2.4700 7.6009 4.1952 45 1 -0.4323 9.0458 5.9423 46 1 3.9991 0.9045 -0.7165 47 1 3.8529 0.9565 1.0569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424124698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:10 Heat of formation + Delta-G solvation = -105.201631 kcal Electronic energy + Delta-G solvation = -23210.049902 eV Core-core repulsion = 20003.653902 eV Total energy + Delta-G solvation = -3206.396000 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37932 -39.56166 -37.06243 -35.61920 -34.83686 -33.72563 -31.69185 -31.17665 -29.75263 -28.06027 -25.76732 -24.61533 -23.37119 -22.60660 -21.62308 -21.28870 -19.99713 -18.89962 -18.10565 -16.98683 -16.61352 -16.56607 -16.10706 -15.82522 -15.63029 -15.49651 -14.99599 -14.70317 -14.56025 -14.27526 -14.10281 -13.93175 -13.57381 -13.44294 -13.11520 -12.96966 -12.93616 -12.68049 -12.56701 -12.51629 -12.25422 -11.95804 -11.81763 -11.71004 -11.69796 -11.34566 -11.30828 -10.99674 -10.85937 -10.69618 -10.56426 -9.98225 -9.64373 -8.21858 -6.32262 1.38860 1.39765 1.50273 1.66095 2.20576 2.39656 3.11843 3.68232 3.74616 3.76873 3.82194 3.88177 4.12011 4.17405 4.21989 4.25244 4.38639 4.46873 4.56057 4.58405 4.65665 4.68163 4.78197 4.81012 4.83789 4.85150 5.06050 5.08319 5.09601 5.15574 5.22323 5.27699 5.32763 5.37622 5.42761 5.45752 5.51541 5.62813 5.64374 5.66264 5.79985 6.07308 6.20785 6.47098 6.58426 6.82916 7.29078 7.36917 8.88974 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.004201 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.655194 B = 6663.008573 C = 7656.071815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.089 4.089 4 H 0.061 0.939 5 C -0.108 4.108 6 C -0.119 4.119 7 C -0.125 4.125 8 C 0.145 3.855 9 H 0.069 0.931 10 N -0.711 5.711 11 C 0.527 3.473 12 O -0.573 6.573 13 C 0.079 3.921 14 H 0.107 0.893 15 N -0.829 5.829 16 C -0.118 4.118 17 C 0.030 3.970 18 C -0.544 4.544 19 H 0.053 0.947 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.958 3.042 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.268 1.268 26 C -0.111 4.111 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.036 0.964 38 H 0.408 0.592 39 H 0.343 0.657 40 H 0.352 0.648 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.002 0.998 44 H 0.002 0.998 45 H 0.264 0.736 46 H 0.094 0.906 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.658 -18.142 -12.475 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.107 4.107 4 H 0.080 0.920 5 C -0.145 4.145 6 C -0.157 4.157 7 C -0.164 4.164 8 C 0.041 3.959 9 H 0.087 0.913 10 N -0.364 5.364 11 C 0.313 3.687 12 O -0.452 6.452 13 C -0.036 4.036 14 H 0.124 0.876 15 N -0.361 5.361 16 C -0.158 4.158 17 C -0.007 4.007 18 C -0.582 4.582 19 H 0.072 0.928 20 C -0.192 4.192 21 N -0.566 5.566 22 Si 0.783 3.217 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.149 4.149 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.055 0.945 38 H 0.245 0.755 39 H 0.156 0.844 40 H 0.167 0.833 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.073 0.927 46 H 0.112 0.888 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.736 -18.548 -12.548 22.703 hybrid contribution -1.661 1.801 0.093 2.452 sum 2.075 -16.747 -12.455 20.973 Atomic orbital electron populations 1.21842 0.96020 1.01752 1.01803 1.21511 0.95768 0.95282 1.02506 1.21194 0.94761 0.96766 0.98029 0.92014 1.21601 1.00927 0.94323 0.97674 1.21492 0.94868 0.97892 1.01411 1.21864 0.96885 1.00020 0.97633 1.21003 0.97745 0.92135 0.85051 0.91268 1.46052 1.25968 1.29850 1.34512 1.20663 0.83932 0.80368 0.83700 1.90609 1.24084 1.67733 1.62745 1.21423 0.91290 0.96415 0.94494 0.87561 1.58762 1.32826 1.33027 1.11451 1.22096 0.96784 0.97683 0.99194 1.18966 0.94233 0.94476 0.93003 1.21602 1.18102 1.25499 0.93042 0.92826 1.25844 0.99770 0.98529 0.95013 1.70057 1.41471 1.43040 1.02069 0.85556 0.79410 0.78507 0.78245 1.19641 1.20757 1.19298 1.21831 0.95894 0.93363 1.03810 0.93388 0.92431 0.92360 0.91082 0.91723 0.91457 0.90765 0.91951 0.93456 0.89478 0.94497 0.75525 0.84405 0.83337 0.93967 0.91791 0.97971 0.97972 0.92717 0.88767 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.67 71.98 0.70 -1.31 16 2 C -0.11 -1.35 5.40 30.60 0.17 -1.19 16 3 C -0.09 -1.27 2.02 -10.79 -0.02 -1.29 16 4 H 0.06 1.01 6.51 -2.39 -0.02 0.99 16 5 C -0.11 -1.61 4.96 30.60 0.15 -1.45 16 6 C -0.12 -2.35 5.77 30.60 0.18 -2.17 16 7 C -0.13 -2.68 5.60 30.59 0.17 -2.51 16 8 C 0.14 3.11 2.78 44.99 0.13 3.24 16 9 H 0.07 1.75 7.57 -2.39 -0.02 1.73 16 10 N -0.71 -17.80 4.23 -442.55 -1.87 -19.67 16 11 C 0.53 17.38 7.04 87.66 0.62 18.00 16 12 O -0.57 -22.60 15.91 -3.04 -0.05 -22.65 16 13 C 0.08 2.71 3.21 44.17 0.14 2.85 16 14 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 15 N -0.83 -29.37 8.94 -171.80 -1.54 -30.91 16 16 C -0.12 -4.66 4.78 30.60 0.15 -4.52 16 17 C 0.03 1.50 4.74 29.85 0.14 1.64 16 18 C -0.54 -30.05 9.11 25.60 0.23 -29.81 16 19 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 20 C 0.01 0.39 5.46 84.65 0.46 0.85 16 21 N -0.93 -54.42 13.29 21.45 0.28 -54.14 16 22 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 26 C -0.11 -1.64 4.89 30.59 0.15 -1.49 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.73 6.56 -2.39 -0.02 0.71 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.07 1.00 6.56 -2.39 -0.02 0.98 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.11 7.60 -2.39 -0.02 1.10 16 36 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.41 8.87 6.87 -92.70 -0.64 8.23 16 39 H 0.34 12.44 8.58 -89.70 -0.77 11.67 16 40 H 0.35 12.58 7.55 -89.69 -0.68 11.90 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 42 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.00 0.10 6.87 -2.39 -0.02 0.09 16 45 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 46 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -65.06 363.37 1.08 -63.98 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -1.13 Total: 37.08 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 3.36 Total: -19.16 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -3.12 Total: -104.72 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.05 Total: -22.65 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.06 1.08 -63.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424124698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.226 kcal (2) G-P(sol) polarization free energy of solvation -65.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds