Wall clock time and date at job start Tue Mar 31 2020 06:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47126 * 2 1 4 4 N 1.46507 * 109.46963 * 120.00285 * 2 1 3 5 5 C 1.46497 * 119.99681 * 295.87095 * 4 2 1 6 6 C 1.52998 * 109.47315 * 264.74384 * 5 4 2 7 7 C 1.53781 * 113.61701 * 272.22870 * 6 5 4 8 8 C 1.53952 * 87.01879 * 220.04604 * 7 6 5 9 9 C 1.53772 * 87.11283 * 25.36217 * 8 7 6 10 10 C 1.34766 * 120.00281 * 115.87453 * 4 2 1 11 11 O 1.21279 * 120.00525 * 179.97438 * 10 4 2 12 12 C 1.50707 * 119.99911 * 359.97438 * 10 4 2 13 13 H 1.09009 * 109.47148 * 319.99668 * 12 10 4 14 14 N 1.46905 * 109.47115 * 200.00166 * 12 10 4 15 15 C 1.52994 * 109.47283 * 80.00042 * 12 10 4 16 16 C 1.53001 * 109.47281 * 185.00225 * 15 12 10 17 17 C 1.50697 * 109.47274 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00329 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99905 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00043 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99786 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47308 * 59.99525 * 21 19 17 23 23 H 1.48502 * 109.47093 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46996 * 299.99373 * 21 19 17 25 25 H 1.09002 * 109.47191 * 305.24027 * 1 2 3 26 26 H 1.08999 * 109.47325 * 65.24122 * 1 2 3 27 27 H 1.09003 * 109.47239 * 185.24102 * 1 2 3 28 28 H 1.08996 * 109.46902 * 239.99867 * 2 1 3 29 29 H 1.09000 * 109.47384 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47077 * 300.00032 * 3 2 1 31 31 H 1.09004 * 109.47098 * 59.99935 * 3 2 1 32 32 H 1.09007 * 109.47214 * 24.74384 * 5 4 2 33 33 H 1.08994 * 109.47135 * 144.74319 * 5 4 2 34 34 H 1.09002 * 112.84990 * 43.42282 * 6 5 4 35 35 H 1.08998 * 113.61365 * 334.56616 * 7 6 5 36 36 H 1.08995 * 113.61317 * 105.46541 * 7 6 5 37 37 H 1.09004 * 113.53721 * 270.80712 * 8 7 6 38 38 H 1.09003 * 113.66432 * 139.93087 * 8 7 6 39 39 H 1.09004 * 113.61459 * 220.09039 * 9 8 7 40 40 H 1.08999 * 113.69387 * 89.19966 * 9 8 7 41 41 H 1.00899 * 110.99898 * 176.04137 * 14 12 10 42 42 H 1.00899 * 110.99866 * 299.99955 * 14 12 10 43 43 H 1.09004 * 109.47073 * 305.00007 * 15 12 10 44 44 H 1.08996 * 109.47198 * 65.00056 * 15 12 10 45 45 H 1.09004 * 109.46889 * 299.99894 * 16 15 12 46 46 H 1.09005 * 109.47310 * 59.99850 * 16 15 12 47 47 H 0.97001 * 120.00009 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7405 -0.1397 2.5248 6 6 2.9276 0.7098 2.9832 7 6 4.0154 -0.0950 3.7139 8 6 4.1373 1.0986 4.6785 9 6 2.6839 1.4427 4.3129 10 6 2.7231 -1.8329 1.0743 11 8 3.1278 -2.4044 2.0645 12 6 3.0085 -2.4000 -0.2925 13 1 2.1276 -2.2861 -0.9243 14 7 3.3430 -3.8253 -0.1712 15 6 4.1862 -1.6513 -0.9196 16 6 4.3965 -2.1412 -2.3538 17 6 5.5561 -1.4033 -2.9717 18 1 6.0895 -0.6591 -2.3990 19 6 5.9355 -1.6776 -4.2686 20 7 5.2857 -2.5835 -4.9662 21 14 7.3733 -0.7634 -5.0342 22 1 8.6016 -1.0182 -4.2396 23 1 7.5774 -1.2388 -6.4262 24 1 7.0843 0.6931 -5.0455 25 1 -0.3634 0.5930 0.8393 26 1 -0.3634 0.4304 -0.9332 27 1 -0.3634 -1.0234 0.0939 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.8453 0.4807 2.4810 33 1 1.5832 -0.9551 3.2307 34 1 3.3167 1.3539 2.1946 35 1 3.6425 -1.0030 4.1878 36 1 4.9092 -0.2660 3.1140 37 1 4.8586 1.8487 4.3538 38 1 4.2682 0.8073 5.7207 39 1 2.5043 2.5114 4.1959 40 1 1.9451 0.9567 4.9503 41 1 3.4756 -4.2442 -1.0795 42 1 4.1570 -3.9575 0.4103 43 1 3.9739 -0.5822 -0.9283 44 1 5.0876 -1.8380 -0.3360 45 1 4.6088 -3.2103 -2.3450 46 1 3.4950 -1.9545 -2.9374 47 1 5.5528 -2.7767 -5.8784 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424193066.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:37 Heat of formation + Delta-G solvation = -37.413449 kcal Electronic energy + Delta-G solvation = -23793.222188 eV Core-core repulsion = 20589.765704 eV Total energy + Delta-G solvation = -3203.456484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.29899 -38.42950 -36.40745 -35.46946 -32.84430 -31.66361 -29.88560 -28.90826 -27.25961 -26.20863 -25.53679 -24.01811 -22.63245 -21.67022 -20.33931 -19.38930 -18.49888 -17.51598 -16.28248 -15.90497 -15.37863 -15.34845 -14.82168 -14.47610 -14.20681 -14.10910 -13.78326 -13.32959 -13.16931 -12.96990 -12.66067 -12.48518 -12.38233 -12.22352 -12.07093 -11.86240 -11.67083 -11.40548 -11.24404 -11.07218 -10.93120 -10.76550 -10.70294 -10.63218 -10.30181 -10.14723 -9.96793 -9.82197 -9.26764 -9.10011 -8.45461 -8.43609 -8.13651 -6.08380 -4.11451 3.01918 3.13979 3.28031 3.33068 3.35450 4.39103 4.54647 4.66486 4.73443 4.77725 4.84462 4.93556 5.07945 5.19191 5.27836 5.32523 5.41491 5.47037 5.53988 5.55893 5.61931 5.65474 5.70014 5.76711 5.78963 5.80933 5.84517 5.92713 5.98824 6.11730 6.17359 6.21074 6.28806 6.34156 6.53864 6.55361 6.77440 6.88944 7.46489 7.52381 7.61843 7.71680 7.88590 7.94215 8.31503 8.55762 8.94174 9.53358 11.02474 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017105 B = 0.004461 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.530131 B = 6275.310092 C = 6502.382117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.122 3.878 3 C -0.162 4.162 4 N -0.608 5.608 5 C 0.129 3.871 6 C -0.129 4.129 7 C -0.123 4.123 8 C -0.146 4.146 9 C -0.133 4.133 10 C 0.527 3.473 11 O -0.533 6.533 12 C 0.072 3.928 13 H 0.094 0.906 14 N -0.831 5.831 15 C -0.138 4.138 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.053 0.947 19 C 0.060 3.940 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.353 0.647 42 H 0.345 0.655 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.017 0.983 46 H 0.017 0.983 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 8.053 13.715 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 C -0.219 4.219 4 N -0.342 5.342 5 C 0.006 3.994 6 C -0.148 4.148 7 C -0.160 4.160 8 C -0.183 4.183 9 C -0.171 4.171 10 C 0.316 3.684 11 O -0.409 6.409 12 C -0.043 4.043 13 H 0.112 0.888 14 N -0.362 5.362 15 C -0.178 4.178 16 C -0.012 4.012 17 C -0.561 4.561 18 H 0.072 0.928 19 C -0.142 4.142 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.168 0.832 42 H 0.158 0.842 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.623 7.552 14.407 18.900 hybrid contribution 1.703 0.909 -1.124 2.234 sum -7.920 8.461 13.283 17.628 Atomic orbital electron populations 1.22185 0.95217 1.02426 1.02248 1.21316 0.94158 0.94006 0.88689 1.22206 1.02110 0.95479 1.02154 1.48032 1.55190 1.24648 1.06380 1.21354 0.96638 0.97083 0.84324 1.23070 0.97097 0.98053 0.96615 1.22890 0.98856 0.96857 0.97400 1.22871 0.96779 0.99058 0.99631 1.22863 0.97266 0.99912 0.97067 1.20810 0.76551 0.79394 0.91676 1.90606 1.50988 1.59496 1.39799 1.21524 1.00203 0.90122 0.92410 0.88798 1.58760 1.45731 1.11699 1.20056 1.22406 0.95603 0.99586 1.00166 1.19090 0.97096 0.96522 0.88456 1.21129 1.15167 1.21896 0.97936 0.92844 1.24996 0.96740 0.95201 0.97250 1.69938 1.40585 1.32373 1.10298 0.86665 0.82957 0.80135 0.78309 1.20248 1.21207 1.20229 0.92539 0.91324 0.92155 0.87862 0.91827 0.91378 0.92369 0.90874 0.90477 0.88940 0.89592 0.92004 0.90602 0.91814 0.91798 0.90264 0.83230 0.84216 0.92429 0.92795 0.96457 0.96437 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.16 37.16 0.34 -1.27 16 2 C 0.12 1.46 2.51 -67.93 -0.17 1.29 16 3 C -0.16 -1.75 8.04 37.15 0.30 -1.45 16 4 N -0.61 -8.24 2.38 -166.11 -0.40 -8.63 16 5 C 0.13 1.52 4.40 -4.04 -0.02 1.50 16 6 C -0.13 -1.47 3.48 -89.81 -0.31 -1.79 16 7 C -0.12 -1.58 6.58 -25.83 -0.17 -1.75 16 8 C -0.15 -1.50 8.09 -25.83 -0.21 -1.71 16 9 C -0.13 -1.25 7.65 -25.92 -0.20 -1.45 16 10 C 0.53 8.87 6.89 -10.99 -0.08 8.80 16 11 O -0.53 -10.22 14.50 5.56 0.08 -10.14 16 12 C 0.07 1.26 2.34 -68.86 -0.16 1.10 16 13 H 0.09 1.58 6.71 -51.92 -0.35 1.23 16 14 N -0.83 -14.64 8.94 -5.65 -0.05 -14.69 16 15 C -0.14 -2.72 4.45 -26.73 -0.12 -2.84 16 16 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 17 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H 0.06 0.49 7.03 -51.93 -0.37 0.13 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.10 1.42 4.75 -51.93 -0.25 1.17 16 29 H 0.06 0.79 7.72 -51.93 -0.40 0.39 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.55 6.91 -51.93 -0.36 0.19 16 32 H 0.07 0.71 6.63 -51.92 -0.34 0.37 16 33 H 0.08 1.01 7.28 -51.93 -0.38 0.64 16 34 H 0.09 1.11 6.33 -51.93 -0.33 0.78 16 35 H 0.09 1.21 7.57 -51.93 -0.39 0.82 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.35 6.22 7.55 -39.29 -0.30 5.92 16 42 H 0.34 6.16 8.58 -39.29 -0.34 5.83 16 43 H 0.06 1.10 6.92 -51.93 -0.36 0.74 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -29.83 361.14 -8.83 -38.66 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -8.28 Total: 10.42 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.34 Total: -12.08 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: 0.29 Total: -48.48 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.83 -8.83 -38.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424193066.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.243 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds