Wall clock time and date at job start Tue Mar 31 2020 06:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52991 * 109.47189 * 2 1 4 4 N 1.46503 * 109.46964 * 120.00339 * 2 1 3 5 5 C 1.46497 * 120.00109 * 121.47283 * 4 2 1 6 6 C 1.53003 * 109.47072 * 276.27243 * 5 4 2 7 7 C 1.53784 * 113.61515 * 271.68599 * 6 5 4 8 8 C 1.53948 * 87.01805 * 220.05107 * 7 6 5 9 9 C 1.53775 * 87.11415 * 25.36374 * 8 7 6 10 10 C 1.34777 * 119.99678 * 301.47470 * 4 2 1 11 11 O 1.21278 * 120.00344 * 5.01059 * 10 4 2 12 12 C 1.50699 * 119.99895 * 185.01672 * 10 4 2 13 13 H 1.09011 * 109.47110 * 14.96758 * 12 10 4 14 14 N 1.46904 * 109.47081 * 134.96221 * 12 10 4 15 15 C 1.52993 * 109.47484 * 254.96662 * 12 10 4 16 16 C 1.52998 * 109.47542 * 173.63590 * 15 12 10 17 17 C 1.50702 * 109.46990 * 179.97438 * 16 15 12 18 18 H 1.07992 * 120.00218 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99683 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99944 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99841 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47266 * 90.00192 * 21 19 17 23 23 H 1.48511 * 109.47100 * 210.00026 * 21 19 17 24 24 H 1.48502 * 109.47683 * 329.99959 * 21 19 17 25 25 H 1.09002 * 109.46664 * 306.43079 * 1 2 3 26 26 H 1.09002 * 109.46862 * 66.42939 * 1 2 3 27 27 H 1.08998 * 109.47058 * 186.42855 * 1 2 3 28 28 H 1.08998 * 109.46539 * 239.99720 * 2 1 3 29 29 H 1.09005 * 109.46900 * 184.73446 * 3 2 1 30 30 H 1.09003 * 109.47526 * 304.73396 * 3 2 1 31 31 H 1.09000 * 109.47391 * 64.73584 * 3 2 1 32 32 H 1.08994 * 109.46945 * 36.27460 * 5 4 2 33 33 H 1.09001 * 109.47165 * 156.27621 * 5 4 2 34 34 H 1.09003 * 112.84972 * 42.88417 * 6 5 4 35 35 H 1.08995 * 113.61289 * 334.57374 * 7 6 5 36 36 H 1.08997 * 113.60886 * 105.47272 * 7 6 5 37 37 H 1.09005 * 113.53696 * 270.80788 * 8 7 6 38 38 H 1.09004 * 113.66769 * 139.93548 * 8 7 6 39 39 H 1.09007 * 113.61241 * 220.09203 * 9 8 7 40 40 H 1.09000 * 113.69182 * 89.19947 * 9 8 7 41 41 H 1.00894 * 110.99889 * 60.00324 * 14 12 10 42 42 H 1.00898 * 110.99734 * 183.95255 * 14 12 10 43 43 H 1.09007 * 109.46993 * 293.63587 * 15 12 10 44 44 H 1.09000 * 109.47270 * 53.63099 * 15 12 10 45 45 H 1.08993 * 109.47130 * 300.00209 * 16 15 12 46 46 H 1.09002 * 109.46640 * 60.00210 * 16 15 12 47 47 H 0.96994 * 120.00250 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.8871 -1.8627 1.0620 6 6 2.0297 -3.1098 0.8370 7 6 1.5861 -3.7957 2.1399 8 6 1.8544 -5.1358 1.4314 9 6 2.8503 -4.3759 0.5395 10 6 1.6684 -0.2478 2.4200 11 8 0.8777 0.6649 2.5315 12 6 2.2598 -0.8868 3.6501 13 1 3.1252 -1.4864 3.3677 14 7 2.6759 0.1596 4.5935 15 6 1.2123 -1.7837 4.3127 16 6 1.8568 -2.5538 5.4670 17 6 0.8247 -3.4367 6.1200 18 1 -0.1893 -3.4478 5.7486 19 6 1.1752 -4.2304 7.1916 20 7 0.2747 -5.0013 7.7612 21 14 2.9290 -4.2107 7.8344 22 1 3.0602 -3.1672 8.8827 23 1 3.2591 -5.5380 8.4130 24 1 3.8619 -3.9113 6.7185 25 1 -0.3633 0.6103 0.8269 26 1 -0.3633 0.4110 -0.9420 27 1 -0.3633 -1.0212 0.1151 28 1 1.8933 -0.5139 -0.8900 29 1 3.1268 1.4435 -0.0848 30 1 1.6092 1.9802 -0.8445 31 1 1.7477 1.9312 0.9293 32 1 3.5561 -1.7237 0.2129 33 1 3.4750 -1.9853 1.9716 34 1 1.2150 -2.9420 0.1325 35 1 2.2518 -3.6059 2.9818 36 1 0.5364 -3.6322 2.3838 37 1 0.9908 -5.5227 0.8903 38 1 2.3235 -5.8830 2.0715 39 1 2.8198 -4.6802 -0.5067 40 1 3.8629 -4.3446 0.9418 41 1 1.8908 0.7295 4.8707 42 1 3.1341 -0.2407 5.3984 43 1 0.3978 -1.1689 4.6961 44 1 0.8211 -2.4886 3.5791 45 1 2.6712 -3.1684 5.0837 46 1 2.2478 -1.8488 6.2006 47 1 0.5211 -5.5594 8.5153 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424193068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:40 Heat of formation + Delta-G solvation = -23.515985 kcal Electronic energy + Delta-G solvation = -24272.795612 eV Core-core repulsion = 21069.941767 eV Total energy + Delta-G solvation = -3202.853845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.46660 -38.44324 -36.41185 -35.19553 -32.95650 -32.31584 -30.37601 -28.00308 -27.13916 -26.86472 -25.41090 -24.06155 -22.92101 -21.69567 -20.14929 -19.41419 -18.47158 -17.24896 -16.68614 -16.18293 -15.51348 -15.34265 -14.84375 -14.25036 -14.21059 -14.13040 -13.65213 -13.45632 -13.23338 -13.08873 -12.80737 -12.63354 -12.38779 -12.19949 -12.03878 -11.81473 -11.68692 -11.51657 -11.31743 -11.19436 -11.05304 -10.77701 -10.54939 -10.37878 -10.15350 -10.10388 -9.89473 -9.70785 -9.28036 -9.09695 -8.59470 -8.50447 -8.28816 -6.09407 -4.08127 2.91912 3.04959 3.25221 3.33583 3.34204 4.38924 4.49725 4.66474 4.77029 4.81301 4.98356 5.03637 5.11512 5.14892 5.19905 5.23890 5.25080 5.34566 5.47758 5.63166 5.64678 5.70607 5.72146 5.77919 5.83924 5.91510 5.94490 5.98496 6.09967 6.19923 6.25439 6.33218 6.36980 6.40274 6.44191 6.62669 6.75313 6.77346 7.17129 7.25421 7.36170 7.58930 7.68545 7.77518 8.46222 8.48675 8.95734 9.52269 11.03984 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017084 B = 0.005714 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.582532 B = 4899.240471 C = 5766.698949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.146 3.854 3 C -0.166 4.166 4 N -0.610 5.610 5 C 0.113 3.887 6 C -0.132 4.132 7 C -0.137 4.137 8 C -0.142 4.142 9 C -0.132 4.132 10 C 0.536 3.464 11 O -0.536 6.536 12 C 0.066 3.934 13 H 0.093 0.907 14 N -0.834 5.834 15 C -0.145 4.145 16 C -0.007 4.007 17 C -0.518 4.518 18 H 0.071 0.929 19 C 0.068 3.932 20 N -0.901 5.901 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.266 1.266 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.347 0.653 42 H 0.350 0.650 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.016 0.984 46 H 0.008 0.992 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.739 5.451 -17.132 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.043 3.957 3 C -0.224 4.224 4 N -0.344 5.344 5 C -0.010 4.010 6 C -0.151 4.151 7 C -0.174 4.174 8 C -0.179 4.179 9 C -0.170 4.170 10 C 0.324 3.676 11 O -0.412 6.412 12 C -0.048 4.048 13 H 0.111 0.889 14 N -0.366 5.366 15 C -0.184 4.184 16 C -0.045 4.045 17 C -0.556 4.556 18 H 0.089 0.911 19 C -0.133 4.133 20 N -0.540 5.540 21 Si 0.705 3.295 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.190 1.190 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.161 0.839 42 H 0.164 0.836 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.034 0.966 46 H 0.027 0.973 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.754 6.096 -17.529 19.750 hybrid contribution 0.205 -0.751 1.087 1.337 sum 6.959 5.346 -16.442 18.637 Atomic orbital electron populations 1.22249 0.94907 1.02670 1.02875 1.20935 0.94718 0.93033 0.86968 1.22164 1.00595 0.96232 1.03429 1.48068 1.50653 1.30025 1.05627 1.21816 0.92224 0.84050 1.02930 1.23069 0.99109 0.93449 0.99504 1.23316 1.02609 0.95180 0.96273 1.22808 0.99057 0.97357 0.98728 1.22878 0.98561 0.95873 0.99727 1.20638 0.80516 0.82250 0.84146 1.90569 1.34089 1.30109 1.86446 1.21709 0.99019 0.92811 0.91284 0.88918 1.58854 1.33746 1.23580 1.20461 1.22515 0.97461 0.98649 0.99765 1.19546 0.96775 0.95055 0.93109 1.21043 0.97190 1.22855 1.14524 0.91082 1.25021 0.97021 0.94988 0.96284 1.69908 1.33845 1.26891 1.23343 0.86819 0.85743 0.77436 0.79499 1.20293 1.21388 1.19022 0.89952 0.92507 0.92776 0.90206 0.92971 0.92105 0.90599 0.90784 0.89308 0.89242 0.88636 0.90877 0.90617 0.91207 0.91835 0.90058 0.83916 0.83586 0.92158 0.90109 0.96620 0.97342 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 8.97 37.16 0.33 -1.72 16 2 C 0.15 1.68 3.27 -67.93 -0.22 1.46 16 3 C -0.17 -1.90 9.20 37.15 0.34 -1.56 16 4 N -0.61 -7.90 2.42 -166.11 -0.40 -8.31 16 5 C 0.11 1.23 5.17 -4.04 -0.02 1.21 16 6 C -0.13 -1.46 3.95 -89.81 -0.35 -1.82 16 7 C -0.14 -1.92 5.55 -25.83 -0.14 -2.06 16 8 C -0.14 -1.73 8.09 -25.83 -0.21 -1.94 16 9 C -0.13 -1.32 7.64 -25.92 -0.20 -1.52 16 10 C 0.54 8.64 6.10 -10.99 -0.07 8.57 16 11 O -0.54 -9.96 12.94 5.56 0.07 -9.89 16 12 C 0.07 1.08 2.54 -68.87 -0.17 0.90 16 13 H 0.09 1.40 5.10 -51.92 -0.27 1.14 16 14 N -0.83 -13.39 9.15 -5.65 -0.05 -13.44 16 15 C -0.14 -2.77 3.85 -26.74 -0.10 -2.87 16 16 C -0.01 -0.17 3.62 -27.88 -0.10 -0.27 16 17 C -0.52 -14.22 9.66 -34.44 -0.33 -14.55 16 18 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 20 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 21 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 25 H 0.08 1.23 6.14 -51.93 -0.32 0.92 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.75 7.89 -51.93 -0.41 0.34 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.09 6.34 -51.93 -0.33 0.76 16 32 H 0.07 0.65 8.07 -51.93 -0.42 0.24 16 33 H 0.09 1.01 5.02 -51.93 -0.26 0.75 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.10 1.49 5.43 -51.93 -0.28 1.21 16 36 H 0.07 1.16 6.81 -51.93 -0.35 0.81 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.35 5.75 8.64 -39.29 -0.34 5.41 16 42 H 0.35 5.44 7.60 -39.29 -0.30 5.14 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.08 1.53 3.93 -51.93 -0.20 1.32 16 45 H 0.02 0.34 6.56 -51.93 -0.34 0.00 16 46 H 0.01 0.19 6.33 -51.93 -0.33 -0.14 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -30.60 351.32 -8.29 -38.90 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -7.96 Total: 11.96 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -1.35 Total: -14.33 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.32 Total: -48.27 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.60 -8.29 -38.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424193068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.383 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds