Wall clock time and date at job start Tue Mar 31 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46795 * 2 1 4 4 H 1.09004 * 109.47269 * 305.00008 * 3 2 1 5 5 N 1.46500 * 109.47291 * 65.00238 * 3 2 1 6 6 C 1.34782 * 119.99562 * 275.27188 * 5 3 2 7 7 O 1.21580 * 120.00206 * 354.57624 * 6 5 3 8 8 N 1.34780 * 119.99524 * 174.57127 * 6 5 3 9 9 C 1.46498 * 119.99738 * 185.01040 * 8 6 5 10 10 C 1.52997 * 109.46925 * 185.01923 * 9 8 6 11 11 C 1.50695 * 115.55216 * 55.15246 * 10 9 8 12 12 H 1.08005 * 119.99563 * 267.40715 * 11 10 9 13 13 C 1.37871 * 120.00191 * 87.40585 * 11 10 9 14 14 N 1.31520 * 119.99685 * 179.18381 * 13 11 10 15 15 Si 1.86793 * 120.00170 * 359.18227 * 13 11 10 16 16 H 1.48500 * 109.47185 * 91.63212 * 15 13 11 17 17 H 1.48499 * 109.47244 * 211.63304 * 15 13 11 18 18 H 1.48503 * 109.47321 * 331.63312 * 15 13 11 19 19 C 1.53001 * 117.49975 * 269.47712 * 10 9 8 20 20 C 1.53005 * 117.49658 * 200.81961 * 10 9 8 21 21 C 1.52998 * 109.47111 * 185.00156 * 3 2 1 22 22 C 1.53000 * 109.47085 * 300.00030 * 21 3 2 23 23 C 1.53005 * 109.47406 * 59.99776 * 21 3 2 24 24 C 1.52996 * 109.47452 * 179.97438 * 21 3 2 25 25 H 1.09005 * 109.46767 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47497 * 299.99808 * 1 2 3 27 27 H 1.08996 * 109.47190 * 60.00264 * 1 2 3 28 28 H 1.09003 * 109.47084 * 240.00232 * 2 1 3 29 29 H 1.08996 * 109.47190 * 119.99736 * 2 1 3 30 30 H 0.96992 * 120.00344 * 95.00096 * 5 3 2 31 31 H 0.96996 * 120.00045 * 5.01375 * 8 6 5 32 32 H 1.08993 * 109.47557 * 305.02211 * 9 8 6 33 33 H 1.09003 * 109.46958 * 65.02133 * 9 8 6 34 34 H 0.97002 * 119.99797 * 179.97438 * 14 13 11 35 35 H 1.09004 * 117.49939 * 0.02562 * 19 10 9 36 36 H 1.08997 * 117.49985 * 145.02383 * 19 10 9 37 37 H 1.08998 * 117.49962 * 214.98087 * 20 10 9 38 38 H 1.08998 * 117.50222 * 359.97438 * 20 10 9 39 39 H 1.09005 * 109.47074 * 60.00115 * 22 21 3 40 40 H 1.08999 * 109.47268 * 180.02562 * 22 21 3 41 41 H 1.09004 * 109.47127 * 299.99886 * 22 21 3 42 42 H 1.09004 * 109.46845 * 60.00227 * 23 21 3 43 43 H 1.08999 * 109.47258 * 180.02562 * 23 21 3 44 44 H 1.08998 * 109.47014 * 300.00803 * 23 21 3 45 45 H 1.09004 * 109.46891 * 60.00034 * 24 21 3 46 46 H 1.08999 * 109.47416 * 179.97438 * 24 21 3 47 47 H 1.09004 * 109.47230 * 300.00038 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4329 2.6595 1.3688 7 8 -0.3079 2.7105 0.4061 8 7 0.0348 3.1650 2.5531 9 6 -1.3291 3.6762 2.7099 10 6 -1.4829 4.3016 4.0978 11 6 -0.4859 5.3787 4.4394 12 1 0.4288 5.1241 4.9543 13 6 -0.7413 6.6889 4.0948 14 7 0.1214 7.6312 4.4073 15 14 -2.3125 7.1259 3.1841 16 1 -3.3724 7.4739 4.1643 17 1 -2.0617 8.2871 2.2931 18 1 -2.7528 5.9640 2.3708 19 6 -1.9583 3.3930 5.2333 20 6 -2.9011 4.4499 4.6526 21 6 3.5647 1.4444 -0.1258 22 6 4.1748 0.6878 1.0558 23 6 3.9696 0.7603 -1.4331 24 6 4.0747 2.8869 -0.1264 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.2718 2.1232 1.9977 31 1 0.6513 3.1903 3.3015 32 1 -1.5243 4.4306 1.9478 33 1 -2.0392 2.8565 2.6000 34 1 -0.0581 8.5530 4.1645 35 1 -2.1611 2.3496 4.9917 36 1 -1.5502 3.5746 6.2276 37 1 -3.1128 5.3264 5.2650 38 1 -3.7245 4.1024 4.0287 39 1 3.8116 -0.3399 1.0558 40 1 5.2612 0.6895 0.9665 41 1 3.8865 1.1751 1.9873 42 1 3.5349 1.2994 -2.2750 43 1 5.0559 0.7613 -1.5225 44 1 3.6062 -0.2673 -1.4331 45 1 3.7863 3.3746 0.8048 46 1 5.1610 2.8882 -0.2155 47 1 3.6400 3.4256 -0.9685 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430575905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:15 Heat of formation + Delta-G solvation = -25.317103 kcal Electronic energy + Delta-G solvation = -23691.588767 eV Core-core repulsion = 20488.656820 eV Total energy + Delta-G solvation = -3202.931947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.08990 -38.12527 -36.90873 -33.51094 -33.35279 -32.12502 -31.83711 -27.48871 -27.34132 -26.92008 -25.74414 -24.69631 -21.76309 -21.58482 -20.23536 -19.26450 -18.95593 -17.55753 -16.51312 -15.98169 -15.36369 -14.97776 -14.73191 -14.38409 -14.22420 -14.04015 -13.75716 -13.49554 -12.89893 -12.79809 -12.55700 -12.42614 -12.37919 -12.27322 -12.00006 -11.79074 -11.72456 -11.46651 -11.14302 -10.91828 -10.73801 -10.67057 -10.54487 -10.49409 -10.39954 -10.15373 -9.69926 -9.50838 -9.15022 -8.69417 -8.61216 -8.57516 -8.03445 -6.14862 -4.19211 3.24143 3.30735 3.40885 3.47400 3.80917 4.41989 4.51459 4.67381 4.70612 4.80931 5.04974 5.16357 5.17902 5.23853 5.34239 5.49249 5.55133 5.59738 5.67923 5.72780 5.78051 5.80475 5.81987 5.95889 5.99445 6.03838 6.09288 6.09820 6.15280 6.18420 6.30205 6.31868 6.38184 6.44326 6.54090 6.62691 6.72864 6.92227 7.02159 7.10400 7.29999 7.55235 7.69963 8.41706 8.67400 8.84417 9.22999 9.48898 10.96373 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020955 B = 0.004646 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.877700 B = 6025.062344 C = 6524.035355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.175 3.825 4 H 0.086 0.914 5 N -0.745 5.745 6 C 0.701 3.299 7 O -0.601 6.601 8 N -0.720 5.720 9 C 0.176 3.824 10 C -0.015 4.015 11 C -0.488 4.488 12 H 0.077 0.923 13 C 0.081 3.919 14 N -0.896 5.896 15 Si 0.879 3.121 16 H -0.279 1.279 17 H -0.294 1.294 18 H -0.255 1.255 19 C -0.179 4.179 20 C -0.194 4.194 21 C -0.077 4.077 22 C -0.144 4.144 23 C -0.141 4.141 24 C -0.141 4.141 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.392 0.608 31 H 0.399 0.601 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.565 -14.562 -7.268 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.069 3.931 4 H 0.104 0.896 5 N -0.402 5.402 6 C 0.402 3.598 7 O -0.481 6.481 8 N -0.373 5.373 9 C 0.051 3.949 10 C -0.017 4.017 11 C -0.525 4.525 12 H 0.095 0.905 13 C -0.122 4.122 14 N -0.533 5.533 15 Si 0.707 3.293 16 H -0.205 1.205 17 H -0.221 1.221 18 H -0.180 1.180 19 C -0.216 4.216 20 C -0.231 4.231 21 C -0.077 4.077 22 C -0.202 4.202 23 C -0.198 4.198 24 C -0.199 4.199 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.227 0.773 31 H 0.234 0.766 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.885 -14.313 -8.144 17.488 hybrid contribution -0.272 0.534 0.324 0.681 sum 5.613 -13.779 -7.820 16.808 Atomic orbital electron populations 1.21758 0.95025 0.99909 1.03364 1.22084 0.96986 0.96693 1.01723 1.20777 0.92477 0.92574 0.87242 0.89553 1.45191 1.16047 1.62048 1.16895 1.15959 0.81755 0.78305 0.83824 1.90860 1.54873 1.64663 1.37715 1.44973 1.15751 1.64796 1.11737 1.20918 0.80407 0.95865 0.97699 1.19638 0.94024 0.98154 0.89834 1.20135 1.04459 0.89357 1.38559 0.90511 1.24950 0.96502 0.96207 0.94550 1.69888 1.35931 1.01042 1.46418 0.86863 0.83818 0.78363 0.80268 1.20526 1.22137 1.17966 1.22861 1.05287 0.93976 0.99500 1.22932 0.93910 1.01312 1.04996 1.20812 0.94312 0.96374 0.96224 1.21940 1.00520 1.00252 0.97454 1.21905 1.01195 1.00517 0.96213 1.21859 1.00379 0.94935 1.02703 0.94198 0.92198 0.92361 0.91383 0.91971 0.77322 0.76642 0.91950 0.94394 0.92544 0.90931 0.89518 0.89226 0.90760 0.92155 0.92547 0.92584 0.92413 0.92457 0.92132 0.92082 0.92769 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.58 37.16 0.32 -1.66 16 2 C -0.14 -1.54 4.89 -26.73 -0.13 -1.67 16 3 C 0.18 2.16 1.54 -67.93 -0.10 2.06 16 4 H 0.09 1.29 7.51 -51.93 -0.39 0.90 16 5 N -0.75 -10.48 4.27 -58.68 -0.25 -10.73 16 6 C 0.70 12.94 6.92 -86.91 -0.60 12.34 16 7 O -0.60 -13.00 13.87 5.30 0.07 -12.92 16 8 N -0.72 -13.74 5.36 -65.23 -0.35 -14.09 16 9 C 0.18 3.74 5.36 -4.04 -0.02 3.72 16 10 C -0.02 -0.34 0.94 -155.66 -0.15 -0.48 16 11 C -0.49 -12.75 8.84 -34.44 -0.30 -13.06 16 12 H 0.08 2.15 8.06 -52.48 -0.42 1.73 16 13 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 14 N -0.90 -26.52 13.96 55.43 0.77 -25.75 16 15 Si 0.88 21.69 24.91 -169.99 -4.23 17.46 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.26 -6.10 5.58 56.52 0.32 -5.79 16 19 C -0.18 -3.44 9.93 -26.69 -0.26 -3.71 16 20 C -0.19 -3.99 7.57 -26.69 -0.20 -4.20 16 21 C -0.08 -0.74 0.59 -154.51 -0.09 -0.84 16 22 C -0.14 -1.24 7.95 37.16 0.30 -0.94 16 23 C -0.14 -1.17 8.13 37.16 0.30 -0.87 16 24 C -0.14 -1.51 8.32 37.16 0.31 -1.20 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.98 5.74 -51.93 -0.30 0.68 16 27 H 0.06 0.88 7.92 -51.93 -0.41 0.47 16 28 H 0.07 0.66 6.17 -51.93 -0.32 0.34 16 29 H 0.06 0.66 6.71 -51.93 -0.35 0.31 16 30 H 0.39 4.80 6.67 -40.82 -0.27 4.52 16 31 H 0.40 7.18 8.16 -40.82 -0.33 6.84 16 32 H 0.06 1.50 6.46 -51.93 -0.34 1.16 16 33 H 0.04 0.77 8.09 -51.93 -0.42 0.35 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.09 1.94 7.19 -51.93 -0.37 1.57 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.49 6.51 -51.93 -0.34 0.15 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.46 6.32 -51.93 -0.33 0.13 16 45 H 0.06 0.73 7.45 -51.93 -0.39 0.34 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -30.19 354.25 -7.73 -37.92 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -8.34 Total: 11.14 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.74 Total: -8.36 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.17 Total: -50.58 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.07 Total: -12.92 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.23 Total: 17.46 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.19 -7.73 -37.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430575905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.602 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds