Wall clock time and date at job start Tue Mar 31 2020 05:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46795 * 2 1 4 4 H 1.09004 * 109.47269 * 305.00008 * 3 2 1 5 5 N 1.46500 * 109.47291 * 65.00238 * 3 2 1 6 6 C 1.34782 * 119.99562 * 275.27188 * 5 3 2 7 7 O 1.21580 * 120.00206 * 354.57624 * 6 5 3 8 8 N 1.34780 * 119.99524 * 174.57127 * 6 5 3 9 9 C 1.46498 * 119.99738 * 185.01040 * 8 6 5 10 10 C 1.52997 * 109.46925 * 185.01923 * 9 8 6 11 11 C 1.50695 * 115.55216 * 55.15246 * 10 9 8 12 12 H 1.08005 * 119.99563 * 267.40715 * 11 10 9 13 13 C 1.37871 * 120.00191 * 87.40585 * 11 10 9 14 14 N 1.31520 * 119.99685 * 179.18381 * 13 11 10 15 15 Si 1.86793 * 120.00170 * 359.18227 * 13 11 10 16 16 H 1.48500 * 109.47185 * 91.63212 * 15 13 11 17 17 H 1.48499 * 109.47244 * 211.63304 * 15 13 11 18 18 H 1.48503 * 109.47321 * 331.63312 * 15 13 11 19 19 C 1.53001 * 117.49975 * 269.47712 * 10 9 8 20 20 C 1.53005 * 117.49658 * 200.81961 * 10 9 8 21 21 C 1.52998 * 109.47111 * 185.00156 * 3 2 1 22 22 C 1.53000 * 109.47085 * 300.00030 * 21 3 2 23 23 C 1.53005 * 109.47406 * 59.99776 * 21 3 2 24 24 C 1.52996 * 109.47452 * 179.97438 * 21 3 2 25 25 H 1.09005 * 109.46767 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47497 * 299.99808 * 1 2 3 27 27 H 1.08996 * 109.47190 * 60.00264 * 1 2 3 28 28 H 1.09003 * 109.47084 * 240.00232 * 2 1 3 29 29 H 1.08996 * 109.47190 * 119.99736 * 2 1 3 30 30 H 0.96992 * 120.00344 * 95.00096 * 5 3 2 31 31 H 0.96996 * 120.00045 * 5.01375 * 8 6 5 32 32 H 1.08993 * 109.47557 * 305.02211 * 9 8 6 33 33 H 1.09003 * 109.46958 * 65.02133 * 9 8 6 34 34 H 0.97002 * 119.99797 * 179.97438 * 14 13 11 35 35 H 1.09004 * 117.49939 * 0.02562 * 19 10 9 36 36 H 1.08997 * 117.49985 * 145.02383 * 19 10 9 37 37 H 1.08998 * 117.49962 * 214.98087 * 20 10 9 38 38 H 1.08998 * 117.50222 * 359.97438 * 20 10 9 39 39 H 1.09005 * 109.47074 * 60.00115 * 22 21 3 40 40 H 1.08999 * 109.47268 * 180.02562 * 22 21 3 41 41 H 1.09004 * 109.47127 * 299.99886 * 22 21 3 42 42 H 1.09004 * 109.46845 * 60.00227 * 23 21 3 43 43 H 1.08999 * 109.47258 * 180.02562 * 23 21 3 44 44 H 1.08998 * 109.47014 * 300.00803 * 23 21 3 45 45 H 1.09004 * 109.46891 * 60.00034 * 24 21 3 46 46 H 1.08999 * 109.47416 * 179.97438 * 24 21 3 47 47 H 1.09004 * 109.47230 * 300.00038 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6524 2.0975 1.2518 6 6 0.4329 2.6595 1.3688 7 8 -0.3079 2.7105 0.4061 8 7 0.0348 3.1650 2.5531 9 6 -1.3291 3.6762 2.7099 10 6 -1.4829 4.3016 4.0978 11 6 -0.4859 5.3787 4.4394 12 1 0.4288 5.1241 4.9543 13 6 -0.7413 6.6889 4.0948 14 7 0.1214 7.6312 4.4073 15 14 -2.3125 7.1259 3.1841 16 1 -3.3724 7.4739 4.1643 17 1 -2.0617 8.2871 2.2931 18 1 -2.7528 5.9640 2.3708 19 6 -1.9583 3.3930 5.2333 20 6 -2.9011 4.4499 4.6526 21 6 3.5647 1.4444 -0.1258 22 6 4.1748 0.6878 1.0558 23 6 3.9696 0.7603 -1.4331 24 6 4.0747 2.8869 -0.1264 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.2718 2.1232 1.9977 31 1 0.6513 3.1903 3.3015 32 1 -1.5243 4.4306 1.9478 33 1 -2.0392 2.8565 2.6000 34 1 -0.0581 8.5530 4.1645 35 1 -2.1611 2.3496 4.9917 36 1 -1.5502 3.5746 6.2276 37 1 -3.1128 5.3264 5.2650 38 1 -3.7245 4.1024 4.0287 39 1 3.8116 -0.3399 1.0558 40 1 5.2612 0.6895 0.9665 41 1 3.8865 1.1751 1.9873 42 1 3.5349 1.2994 -2.2750 43 1 5.0559 0.7613 -1.5225 44 1 3.6062 -0.2673 -1.4331 45 1 3.7863 3.3746 0.8048 46 1 5.1610 2.8882 -0.2155 47 1 3.6400 3.4256 -0.9685 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430575905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:15 Heat of formation + Delta-G solvation = -44.927035 kcal Electronic energy + Delta-G solvation = -23692.439117 eV Core-core repulsion = 20488.656820 eV Total energy + Delta-G solvation = -3203.782298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36448 -39.41458 -38.45649 -34.94847 -34.57051 -34.20958 -33.00671 -28.53245 -28.19387 -28.10002 -27.43355 -26.16190 -23.34607 -22.65174 -21.62915 -21.06742 -19.96874 -19.00413 -18.21770 -17.30335 -16.98646 -16.53658 -15.88903 -15.86290 -15.32674 -15.10531 -14.90605 -14.80083 -14.74920 -14.29554 -14.09514 -13.84870 -13.45863 -13.25361 -13.09300 -12.94125 -12.66076 -12.59659 -12.55103 -12.47725 -12.17474 -11.98372 -11.72554 -11.59078 -11.56863 -11.48460 -11.31048 -11.12538 -10.96406 -10.64109 -10.34894 -10.04015 -9.51721 -8.29824 -6.34963 1.32226 1.39073 1.49346 1.91207 2.33389 2.36557 3.06244 3.16360 3.57598 3.64687 3.87250 4.00093 4.06836 4.28143 4.34015 4.38502 4.42525 4.43119 4.58406 4.63802 4.75180 4.77665 4.82481 4.87804 4.91712 4.94383 4.97191 5.05902 5.09625 5.11247 5.14208 5.19699 5.23137 5.30885 5.36044 5.47684 5.50279 5.50824 5.55430 5.68812 5.74095 5.79845 6.20125 6.29438 6.72859 7.27447 7.35559 7.77497 8.84604 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020955 B = 0.004646 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.877700 B = 6025.062344 C = 6524.035355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.172 3.828 4 H 0.057 0.943 5 N -0.729 5.729 6 C 0.699 3.301 7 O -0.635 6.635 8 N -0.721 5.721 9 C 0.186 3.814 10 C -0.040 4.040 11 C -0.472 4.472 12 H 0.047 0.953 13 C 0.028 3.972 14 N -0.943 5.943 15 Si 0.926 3.074 16 H -0.266 1.266 17 H -0.306 1.306 18 H -0.243 1.243 19 C -0.151 4.151 20 C -0.193 4.193 21 C -0.069 4.069 22 C -0.143 4.143 23 C -0.139 4.139 24 C -0.142 4.142 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.036 0.964 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.403 0.597 31 H 0.404 0.596 32 H 0.031 0.969 33 H 0.053 0.947 34 H 0.263 0.737 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.694 -17.239 -7.454 19.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.067 3.933 4 H 0.075 0.925 5 N -0.386 5.386 6 C 0.399 3.601 7 O -0.517 6.517 8 N -0.375 5.375 9 C 0.061 3.939 10 C -0.041 4.041 11 C -0.510 4.510 12 H 0.065 0.935 13 C -0.170 4.170 14 N -0.583 5.583 15 Si 0.752 3.248 16 H -0.192 1.192 17 H -0.233 1.233 18 H -0.167 1.167 19 C -0.188 4.188 20 C -0.231 4.231 21 C -0.070 4.070 22 C -0.200 4.200 23 C -0.196 4.196 24 C -0.200 4.200 25 H 0.076 0.924 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.239 0.761 31 H 0.239 0.761 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.090 0.910 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.038 -17.030 -8.316 19.890 hybrid contribution -0.238 1.316 0.393 1.394 sum 5.800 -15.714 -7.923 18.529 Atomic orbital electron populations 1.21697 0.96883 1.00255 1.00880 1.22055 0.95137 0.95944 1.03584 1.20938 0.94388 0.92774 0.85193 0.92500 1.45126 1.14597 1.60881 1.17969 1.16106 0.82655 0.78259 0.83073 1.90836 1.56223 1.65972 1.38686 1.44904 1.15330 1.64998 1.12253 1.20656 0.81844 0.95413 0.95977 1.19486 0.94429 0.98825 0.91402 1.20304 1.04095 0.90230 1.36347 0.93478 1.25643 0.99058 0.96524 0.95738 1.70011 1.38032 1.01366 1.48925 0.86094 0.81216 0.77997 0.79450 1.19171 1.23336 1.16665 1.22889 1.02790 0.95038 0.98060 1.22996 0.93592 1.01635 1.04904 1.20774 0.92056 0.96135 0.98002 1.21942 1.01338 1.00426 0.96311 1.21905 1.02163 1.00786 0.94782 1.21871 1.01489 0.95456 1.01135 0.92356 0.94981 0.94516 0.89026 0.90414 0.76052 0.76111 0.95094 0.92917 0.92804 0.87911 0.89604 0.90377 0.88453 0.91073 0.91200 0.93052 0.93108 0.90992 0.90902 0.93779 0.91002 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 8.58 71.98 0.62 -3.11 16 2 C -0.13 -2.64 4.89 30.59 0.15 -2.49 16 3 C 0.17 4.10 1.54 44.99 0.07 4.17 16 4 H 0.06 1.72 7.51 -2.38 -0.02 1.70 16 5 N -0.73 -20.20 4.27 -457.81 -1.95 -22.15 16 6 C 0.70 25.90 6.92 179.05 1.24 27.14 16 7 O -0.63 -27.93 13.87 -3.97 -0.06 -27.99 16 8 N -0.72 -27.43 5.36 -478.55 -2.56 -30.00 16 9 C 0.19 7.80 5.36 86.38 0.46 8.26 16 10 C -0.04 -1.73 0.94 -52.93 -0.05 -1.78 16 11 C -0.47 -24.93 8.84 25.60 0.23 -24.71 16 12 H 0.05 2.71 8.06 -2.91 -0.02 2.69 16 13 C 0.03 1.60 5.47 84.65 0.46 2.07 16 14 N -0.94 -57.52 13.96 21.45 0.30 -57.22 16 15 Si 0.93 44.98 24.91 68.60 1.71 46.68 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 17 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 18 H -0.24 -11.24 5.58 99.48 0.55 -10.69 16 19 C -0.15 -5.38 9.93 30.62 0.30 -5.07 16 20 C -0.19 -7.50 7.57 30.62 0.23 -7.27 16 21 C -0.07 -1.22 0.59 -52.18 -0.03 -1.25 16 22 C -0.14 -2.03 7.95 71.98 0.57 -1.45 16 23 C -0.14 -1.94 8.13 71.98 0.59 -1.36 16 24 C -0.14 -2.92 8.32 71.98 0.60 -2.32 16 25 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.03 1.02 5.74 -2.39 -0.01 1.01 16 27 H 0.04 1.11 7.92 -2.39 -0.02 1.09 16 28 H 0.09 1.49 6.17 -2.39 -0.01 1.47 16 29 H 0.08 1.39 6.71 -2.39 -0.02 1.38 16 30 H 0.40 9.51 6.67 -92.71 -0.62 8.89 16 31 H 0.40 14.45 8.16 -92.71 -0.76 13.69 16 32 H 0.03 1.48 6.46 -2.39 -0.02 1.47 16 33 H 0.05 2.05 8.09 -2.39 -0.02 2.03 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.10 3.10 8.14 -2.38 -0.02 3.08 16 36 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 37 H 0.08 3.22 7.19 -2.39 -0.02 3.21 16 38 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.07 0.88 6.54 -2.38 -0.02 0.86 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 0.78 6.51 -2.39 -0.02 0.76 16 42 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.85 6.32 -2.39 -0.02 0.84 16 45 H 0.04 1.04 7.45 -2.39 -0.02 1.02 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -67.07 354.25 2.30 -64.77 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -0.57 Total: 35.07 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 5.44 Total: -9.17 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -4.22 Total: -109.37 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.06 Total: -27.99 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.71 Total: 46.68 kcal Total: -67.07 2.30 -64.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430575905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.845 kcal (2) G-P(sol) polarization free energy of solvation -67.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds