Wall clock time and date at job start Tue Mar 31 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47195 * 2 1 4 4 H 1.08997 * 109.47225 * 54.99861 * 3 2 1 5 5 N 1.46496 * 109.46808 * 294.99716 * 3 2 1 6 6 C 1.34781 * 120.00005 * 155.00504 * 5 3 2 7 7 O 1.21589 * 119.99385 * 354.76858 * 6 5 3 8 8 N 1.34768 * 120.00386 * 174.77350 * 6 5 3 9 9 C 1.46504 * 120.00265 * 185.01007 * 8 6 5 10 10 C 1.52998 * 109.47166 * 185.01550 * 9 8 6 11 11 C 1.50704 * 115.54965 * 55.19110 * 10 9 8 12 12 H 1.07995 * 119.99957 * 267.40248 * 11 10 9 13 13 C 1.37880 * 120.00120 * 87.40353 * 11 10 9 14 14 N 1.31508 * 120.00039 * 179.17560 * 13 11 10 15 15 Si 1.86801 * 119.99697 * 359.18197 * 13 11 10 16 16 H 1.48494 * 109.47402 * 91.62859 * 15 13 11 17 17 H 1.48503 * 109.46603 * 211.63040 * 15 13 11 18 18 H 1.48501 * 109.47142 * 331.62444 * 15 13 11 19 19 C 1.52996 * 117.50080 * 269.52376 * 10 9 8 20 20 C 1.52997 * 117.49909 * 200.85826 * 10 9 8 21 21 C 1.53008 * 109.46825 * 175.00042 * 3 2 1 22 22 C 1.53001 * 109.46825 * 180.02562 * 21 3 2 23 23 C 1.52994 * 109.47165 * 59.99884 * 21 3 2 24 24 C 1.52995 * 109.46939 * 299.99828 * 21 3 2 25 25 H 1.09001 * 109.47107 * 60.00245 * 1 2 3 26 26 H 1.08993 * 109.47429 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47045 * 300.00355 * 1 2 3 28 28 H 1.08995 * 109.47169 * 239.99657 * 2 1 3 29 29 H 1.09001 * 109.47107 * 119.99755 * 2 1 3 30 30 H 0.96997 * 120.00496 * 334.99823 * 5 3 2 31 31 H 0.97004 * 119.99906 * 5.00723 * 8 6 5 32 32 H 1.09002 * 109.46614 * 305.01731 * 9 8 6 33 33 H 1.08997 * 109.47221 * 65.01414 * 9 8 6 34 34 H 0.97001 * 120.00318 * 180.02562 * 14 13 11 35 35 H 1.09003 * 117.49664 * 359.97438 * 19 10 9 36 36 H 1.08992 * 117.50504 * 145.02025 * 19 10 9 37 37 H 1.08993 * 117.50097 * 214.97863 * 20 10 9 38 38 H 1.08997 * 117.49518 * 359.97438 * 20 10 9 39 39 H 1.08997 * 109.47225 * 59.99819 * 22 21 3 40 40 H 1.09004 * 109.46989 * 299.99744 * 22 21 3 41 41 H 1.08998 * 109.46922 * 180.02562 * 22 21 3 42 42 H 1.08998 * 109.46957 * 179.97438 * 23 21 3 43 43 H 1.09004 * 109.47344 * 299.99603 * 23 21 3 44 44 H 1.09004 * 109.47281 * 59.99868 * 23 21 3 45 45 H 1.09003 * 109.47373 * 299.99550 * 24 21 3 46 46 H 1.09000 * 109.47726 * 60.00177 * 24 21 3 47 47 H 1.09008 * 109.46690 * 180.02562 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 1.5257 3.4384 -1.2997 7 8 1.6394 4.0963 -0.2836 8 7 1.2729 4.0499 -2.4737 9 6 1.2439 5.5128 -2.5464 10 6 0.8155 5.9454 -3.9501 11 6 -0.4952 5.3796 -4.4328 12 1 -0.5100 4.4644 -5.0059 13 6 -1.6756 6.0305 -4.1429 14 7 -2.8180 5.5456 -4.5779 15 14 -1.6521 7.6014 -3.1322 16 1 -1.5585 8.7727 -4.0401 17 1 -2.8996 7.6937 -2.3319 18 1 -0.4795 7.5862 -2.2211 19 6 1.9170 6.1620 -4.9896 20 6 1.1790 7.3637 -4.3940 21 6 3.5649 1.4442 0.1257 22 6 4.0749 2.8867 0.1264 23 6 4.1749 0.6876 -1.0559 24 6 3.9696 0.7602 1.4330 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.4872 1.5660 -2.0463 31 1 1.1100 3.5214 -3.2707 32 1 0.5342 5.8989 -1.8147 33 1 2.2373 5.9070 -2.3321 34 1 -3.6484 6.0037 -4.3743 35 1 2.9470 5.9967 -4.6733 36 1 1.6936 5.8957 -6.0226 37 1 0.4705 7.8874 -5.0355 38 1 1.7230 7.9887 -3.6859 39 1 3.6402 3.4254 0.9684 40 1 3.7865 3.3745 -0.8049 41 1 5.1612 2.8880 0.2155 42 1 5.2612 0.6892 -0.9665 43 1 3.8116 -0.3401 -1.0558 44 1 3.8865 1.1749 -1.9873 45 1 3.5350 1.2993 2.2749 46 1 3.6062 -0.2675 1.4332 47 1 5.0559 0.7619 1.5228 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430575906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:19 Heat of formation + Delta-G solvation = -26.064313 kcal Electronic energy + Delta-G solvation = -23769.177569 eV Core-core repulsion = 20566.213221 eV Total energy + Delta-G solvation = -3202.964349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.11222 -37.98478 -36.82356 -33.80972 -33.23346 -32.12738 -31.90971 -27.33178 -27.13372 -26.93333 -25.74138 -24.70610 -21.76266 -21.64149 -20.39247 -19.28331 -18.68391 -17.63524 -16.46829 -15.86098 -15.70857 -14.98415 -14.49121 -14.28006 -14.21697 -13.96239 -13.87901 -13.49653 -12.93536 -12.81477 -12.56244 -12.46681 -12.29016 -12.15245 -12.02979 -11.78518 -11.59058 -11.37201 -11.14426 -10.87954 -10.83031 -10.72048 -10.59074 -10.49804 -10.30654 -10.15432 -9.69753 -9.50495 -9.15132 -8.69109 -8.61062 -8.57640 -8.03068 -6.14935 -4.19280 3.24614 3.30691 3.40789 3.47290 3.80201 4.41881 4.60054 4.68403 4.80306 4.96962 5.05491 5.09237 5.15414 5.17255 5.27842 5.55298 5.59710 5.63071 5.72748 5.75225 5.78746 5.83197 5.92367 5.97270 6.03457 6.05229 6.09540 6.11237 6.13171 6.26459 6.28909 6.30600 6.40276 6.44170 6.54012 6.63236 6.72778 6.92253 7.02079 7.10301 7.29958 7.55324 7.69837 8.41618 8.67678 8.84400 9.23224 9.48815 10.96307 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021388 B = 0.004725 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.805995 B = 5924.869780 C = 6445.776351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.134 4.134 3 C 0.175 3.825 4 H 0.086 0.914 5 N -0.744 5.744 6 C 0.702 3.298 7 O -0.602 6.602 8 N -0.720 5.720 9 C 0.176 3.824 10 C -0.015 4.015 11 C -0.488 4.488 12 H 0.077 0.923 13 C 0.081 3.919 14 N -0.896 5.896 15 Si 0.879 3.121 16 H -0.279 1.279 17 H -0.294 1.294 18 H -0.255 1.255 19 C -0.179 4.179 20 C -0.194 4.194 21 C -0.081 4.081 22 C -0.130 4.130 23 C -0.140 4.140 24 C -0.141 4.141 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.392 0.608 31 H 0.399 0.601 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.040 0.960 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.056 0.944 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.891 -10.682 7.563 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.069 3.931 4 H 0.104 0.896 5 N -0.399 5.399 6 C 0.402 3.598 7 O -0.481 6.481 8 N -0.373 5.373 9 C 0.052 3.948 10 C -0.017 4.017 11 C -0.525 4.525 12 H 0.095 0.905 13 C -0.122 4.122 14 N -0.533 5.533 15 Si 0.707 3.293 16 H -0.205 1.205 17 H -0.221 1.221 18 H -0.180 1.180 19 C -0.216 4.216 20 C -0.232 4.232 21 C -0.083 4.083 22 C -0.188 4.188 23 C -0.197 4.197 24 C -0.198 4.198 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.226 0.774 31 H 0.234 0.766 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.803 -10.011 8.480 17.648 hybrid contribution -0.349 0.468 -0.327 0.669 sum 11.454 -9.543 8.153 16.992 Atomic orbital electron populations 1.21769 0.95290 1.01289 1.02675 1.21934 0.96498 0.95949 1.02790 1.20784 0.92693 0.92291 0.87302 0.89557 1.45119 1.75745 1.05600 1.13457 1.15940 0.77897 0.81654 0.84283 1.90861 1.59361 1.64460 1.33465 1.44973 1.74829 1.08086 1.09371 1.20913 0.98345 0.77952 0.97639 1.19641 0.96030 0.95211 0.90788 1.20135 0.86883 1.10595 1.34890 0.90510 1.24949 0.95217 0.97359 0.94671 1.69881 0.97980 1.40090 1.45328 0.86866 0.77772 0.83714 0.80980 1.20528 1.22138 1.17966 1.22860 0.95634 1.03680 0.99438 1.22931 1.04081 0.91889 1.04251 1.20977 0.95496 0.96409 0.95386 1.21838 0.98915 0.94800 1.03200 1.21875 1.00076 0.99627 0.98124 1.21913 1.01079 1.00118 0.96739 0.92159 0.92922 0.92710 0.91361 0.90451 0.77419 0.76632 0.91970 0.94415 0.92538 0.90940 0.89517 0.89230 0.90766 0.92015 0.92405 0.94124 0.93163 0.92724 0.92482 0.92572 0.92471 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.80 37.16 0.36 -1.23 16 2 C -0.13 -1.27 4.75 -26.73 -0.13 -1.39 16 3 C 0.18 2.13 1.53 -67.93 -0.10 2.03 16 4 H 0.09 1.27 7.51 -51.93 -0.39 0.88 16 5 N -0.74 -10.27 3.66 -58.68 -0.21 -10.48 16 6 C 0.70 12.80 6.72 -86.92 -0.58 12.22 16 7 O -0.60 -12.92 13.87 5.29 0.07 -12.85 16 8 N -0.72 -13.63 5.36 -65.22 -0.35 -13.98 16 9 C 0.18 3.74 5.36 -4.04 -0.02 3.72 16 10 C -0.02 -0.34 0.94 -155.66 -0.15 -0.49 16 11 C -0.49 -12.73 8.84 -34.44 -0.30 -13.04 16 12 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 13 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 14 N -0.90 -26.51 13.96 55.43 0.77 -25.73 16 15 Si 0.88 21.67 24.91 -169.99 -4.23 17.44 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.26 -6.10 5.58 56.52 0.32 -5.78 16 19 C -0.18 -3.44 9.93 -26.69 -0.27 -3.70 16 20 C -0.19 -3.99 7.57 -26.69 -0.20 -4.19 16 21 C -0.08 -0.91 0.62 -154.51 -0.10 -1.00 16 22 C -0.13 -1.79 7.07 37.16 0.26 -1.53 16 23 C -0.14 -1.38 7.96 37.15 0.30 -1.08 16 24 C -0.14 -1.31 8.13 37.15 0.30 -1.01 16 25 H 0.06 0.71 7.75 -51.93 -0.40 0.31 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.58 6.71 -51.93 -0.35 0.23 16 29 H 0.08 0.64 6.17 -51.93 -0.32 0.32 16 30 H 0.39 4.66 8.62 -40.82 -0.35 4.31 16 31 H 0.40 7.12 8.17 -40.82 -0.33 6.78 16 32 H 0.06 1.49 6.46 -51.93 -0.34 1.15 16 33 H 0.04 0.76 8.09 -51.93 -0.42 0.34 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 37 H 0.09 1.94 7.19 -51.93 -0.37 1.56 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.06 0.96 7.63 -51.93 -0.40 0.56 16 40 H 0.06 0.93 5.86 -51.93 -0.30 0.62 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.46 6.54 -51.93 -0.34 0.12 16 44 H 0.06 0.61 7.60 -51.93 -0.39 0.22 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.45 6.32 -51.93 -0.33 0.12 16 47 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 356.50 15.07 5.37 5.37 Total: -1.00 -30.15 356.50 -7.79 -37.94 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -8.49 Total: 10.85 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -0.72 Total: -8.55 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.21 Total: -50.20 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.07 Total: -12.85 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.23 Total: 17.44 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.15 -7.79 -37.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430575906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.878 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds