Wall clock time and date at job start Tue Mar 31 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47195 * 2 1 4 4 H 1.08997 * 109.47225 * 54.99861 * 3 2 1 5 5 N 1.46496 * 109.46808 * 294.99716 * 3 2 1 6 6 C 1.34781 * 120.00005 * 155.00504 * 5 3 2 7 7 O 1.21589 * 119.99385 * 354.76858 * 6 5 3 8 8 N 1.34768 * 120.00386 * 174.77350 * 6 5 3 9 9 C 1.46504 * 120.00265 * 185.01007 * 8 6 5 10 10 C 1.52998 * 109.47166 * 185.01550 * 9 8 6 11 11 C 1.50704 * 115.54965 * 55.19110 * 10 9 8 12 12 H 1.07995 * 119.99957 * 267.40248 * 11 10 9 13 13 C 1.37880 * 120.00120 * 87.40353 * 11 10 9 14 14 N 1.31508 * 120.00039 * 179.17560 * 13 11 10 15 15 Si 1.86801 * 119.99697 * 359.18197 * 13 11 10 16 16 H 1.48494 * 109.47402 * 91.62859 * 15 13 11 17 17 H 1.48503 * 109.46603 * 211.63040 * 15 13 11 18 18 H 1.48501 * 109.47142 * 331.62444 * 15 13 11 19 19 C 1.52996 * 117.50080 * 269.52376 * 10 9 8 20 20 C 1.52997 * 117.49909 * 200.85826 * 10 9 8 21 21 C 1.53008 * 109.46825 * 175.00042 * 3 2 1 22 22 C 1.53001 * 109.46825 * 180.02562 * 21 3 2 23 23 C 1.52994 * 109.47165 * 59.99884 * 21 3 2 24 24 C 1.52995 * 109.46939 * 299.99828 * 21 3 2 25 25 H 1.09001 * 109.47107 * 60.00245 * 1 2 3 26 26 H 1.08993 * 109.47429 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47045 * 300.00355 * 1 2 3 28 28 H 1.08995 * 109.47169 * 239.99657 * 2 1 3 29 29 H 1.09001 * 109.47107 * 119.99755 * 2 1 3 30 30 H 0.96997 * 120.00496 * 334.99823 * 5 3 2 31 31 H 0.97004 * 119.99906 * 5.00723 * 8 6 5 32 32 H 1.09002 * 109.46614 * 305.01731 * 9 8 6 33 33 H 1.08997 * 109.47221 * 65.01414 * 9 8 6 34 34 H 0.97001 * 120.00318 * 180.02562 * 14 13 11 35 35 H 1.09003 * 117.49664 * 359.97438 * 19 10 9 36 36 H 1.08992 * 117.50504 * 145.02025 * 19 10 9 37 37 H 1.08993 * 117.50097 * 214.97863 * 20 10 9 38 38 H 1.08997 * 117.49518 * 359.97438 * 20 10 9 39 39 H 1.08997 * 109.47225 * 59.99819 * 22 21 3 40 40 H 1.09004 * 109.46989 * 299.99744 * 22 21 3 41 41 H 1.08998 * 109.46922 * 180.02562 * 22 21 3 42 42 H 1.08998 * 109.46957 * 179.97438 * 23 21 3 43 43 H 1.09004 * 109.47344 * 299.99603 * 23 21 3 44 44 H 1.09004 * 109.47281 * 59.99868 * 23 21 3 45 45 H 1.09003 * 109.47373 * 299.99550 * 24 21 3 46 46 H 1.09000 * 109.47726 * 60.00177 * 24 21 3 47 47 H 1.09008 * 109.46690 * 180.02562 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0974 -1.2518 6 6 1.5257 3.4384 -1.2997 7 8 1.6394 4.0963 -0.2836 8 7 1.2729 4.0499 -2.4737 9 6 1.2439 5.5128 -2.5464 10 6 0.8155 5.9454 -3.9501 11 6 -0.4952 5.3796 -4.4328 12 1 -0.5100 4.4644 -5.0059 13 6 -1.6756 6.0305 -4.1429 14 7 -2.8180 5.5456 -4.5779 15 14 -1.6521 7.6014 -3.1322 16 1 -1.5585 8.7727 -4.0401 17 1 -2.8996 7.6937 -2.3319 18 1 -0.4795 7.5862 -2.2211 19 6 1.9170 6.1620 -4.9896 20 6 1.1790 7.3637 -4.3940 21 6 3.5649 1.4442 0.1257 22 6 4.0749 2.8867 0.1264 23 6 4.1749 0.6876 -1.0559 24 6 3.9696 0.7602 1.4330 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.4872 1.5660 -2.0463 31 1 1.1100 3.5214 -3.2707 32 1 0.5342 5.8989 -1.8147 33 1 2.2373 5.9070 -2.3321 34 1 -3.6484 6.0037 -4.3743 35 1 2.9470 5.9967 -4.6733 36 1 1.6936 5.8957 -6.0226 37 1 0.4705 7.8874 -5.0355 38 1 1.7230 7.9887 -3.6859 39 1 3.6402 3.4254 0.9684 40 1 3.7865 3.3745 -0.8049 41 1 5.1612 2.8880 0.2155 42 1 5.2612 0.6892 -0.9665 43 1 3.8116 -0.3401 -1.0558 44 1 3.8865 1.1749 -1.9873 45 1 3.5350 1.2993 2.2749 46 1 3.6062 -0.2675 1.4332 47 1 5.0559 0.7619 1.5228 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430575906.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:18 Heat of formation + Delta-G solvation = -45.625011 kcal Electronic energy + Delta-G solvation = -23770.025785 eV Core-core repulsion = 20566.213221 eV Total energy + Delta-G solvation = -3203.812564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38773 -39.34437 -38.34527 -35.03181 -34.63115 -34.20400 -32.99816 -28.50122 -28.15214 -28.06223 -27.40378 -26.12780 -23.34619 -22.57826 -21.81038 -21.08908 -19.68260 -19.13800 -18.24846 -17.20996 -17.01377 -16.69881 -15.87876 -15.56610 -15.45832 -15.04558 -14.98944 -14.77714 -14.72756 -14.23949 -14.21646 -13.80839 -13.45489 -13.15426 -13.08990 -12.97163 -12.67157 -12.60939 -12.51509 -12.30834 -12.17666 -11.98692 -11.77089 -11.69252 -11.58642 -11.54256 -11.21741 -11.10384 -10.96445 -10.64247 -10.35056 -10.02802 -9.49174 -8.29830 -6.34902 1.32093 1.38941 1.49219 1.92760 2.34263 2.36505 3.06289 3.16431 3.58175 3.72154 3.89554 4.06713 4.08119 4.26165 4.31855 4.38276 4.42377 4.43916 4.58395 4.65606 4.76341 4.81015 4.84261 4.87789 4.89243 4.93107 4.97835 5.07879 5.10833 5.12711 5.14999 5.22981 5.26636 5.30769 5.38459 5.43771 5.49964 5.50944 5.56846 5.69002 5.75089 5.82049 6.21799 6.29559 6.72896 7.29370 7.35582 7.79032 8.84604 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021388 B = 0.004725 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.805995 B = 5924.869780 C = 6445.776351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.172 3.828 4 H 0.056 0.944 5 N -0.727 5.727 6 C 0.700 3.300 7 O -0.636 6.636 8 N -0.721 5.721 9 C 0.187 3.813 10 C -0.040 4.040 11 C -0.472 4.472 12 H 0.047 0.953 13 C 0.029 3.971 14 N -0.943 5.943 15 Si 0.926 3.074 16 H -0.267 1.267 17 H -0.305 1.305 18 H -0.244 1.244 19 C -0.151 4.151 20 C -0.194 4.194 21 C -0.078 4.078 22 C -0.125 4.125 23 C -0.136 4.136 24 C -0.138 4.138 25 H 0.040 0.960 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.404 0.596 31 H 0.404 0.596 32 H 0.030 0.970 33 H 0.051 0.949 34 H 0.263 0.737 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.097 0.903 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.260 -11.917 7.873 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C 0.067 3.933 4 H 0.074 0.926 5 N -0.382 5.382 6 C 0.400 3.600 7 O -0.519 6.519 8 N -0.375 5.375 9 C 0.062 3.938 10 C -0.042 4.042 11 C -0.509 4.509 12 H 0.066 0.934 13 C -0.169 4.169 14 N -0.583 5.583 15 Si 0.752 3.248 16 H -0.192 1.192 17 H -0.233 1.233 18 H -0.167 1.167 19 C -0.188 4.188 20 C -0.231 4.231 21 C -0.079 4.079 22 C -0.182 4.182 23 C -0.193 4.193 24 C -0.195 4.195 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.240 0.760 31 H 0.239 0.761 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.097 0.903 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.203 -11.283 8.776 20.150 hybrid contribution -1.050 0.780 -0.437 1.379 sum 13.152 -10.503 8.339 18.784 Atomic orbital electron populations 1.21773 0.96167 1.02056 1.01099 1.21918 0.95589 0.93930 1.04724 1.20951 0.93668 0.93449 0.85256 0.92601 1.45039 1.74432 1.04076 1.14699 1.16085 0.77594 0.82854 0.83453 1.90838 1.60876 1.65642 1.34523 1.44899 1.75214 1.07473 1.09903 1.20640 0.98016 0.79161 0.95991 1.19494 0.95531 0.97042 0.92096 1.20300 0.88679 1.09087 1.32874 0.93447 1.25636 0.95108 1.00187 0.95991 1.70002 0.98629 1.41872 1.47814 0.86101 0.77542 0.81149 0.80006 1.19183 1.23320 1.16706 1.22885 0.96095 1.01358 0.98419 1.22993 1.04172 0.91529 1.04447 1.20952 0.94374 0.95155 0.97425 1.21767 0.99636 0.96238 1.00594 1.21845 1.00531 1.00334 0.96570 1.21894 1.01735 1.00871 0.95010 0.94058 0.90972 0.94009 0.89435 0.88285 0.76042 0.76082 0.95143 0.93044 0.92793 0.87962 0.89583 0.90369 0.88495 0.94635 0.94965 0.92758 0.92393 0.90572 0.93581 0.93490 0.90300 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.80 71.98 0.71 -2.28 16 2 C -0.12 -2.02 4.75 30.59 0.15 -1.88 16 3 C 0.17 4.01 1.53 44.99 0.07 4.08 16 4 H 0.06 1.68 7.51 -2.39 -0.02 1.66 16 5 N -0.73 -19.74 3.66 -457.81 -1.67 -21.41 16 6 C 0.70 25.75 6.72 179.06 1.20 26.95 16 7 O -0.64 -28.01 13.87 -4.00 -0.06 -28.06 16 8 N -0.72 -27.30 5.36 -478.54 -2.56 -29.87 16 9 C 0.19 7.84 5.36 86.38 0.46 8.31 16 10 C -0.04 -1.74 0.94 -52.93 -0.05 -1.79 16 11 C -0.47 -24.89 8.84 25.60 0.23 -24.66 16 12 H 0.05 2.72 8.06 -2.91 -0.02 2.70 16 13 C 0.03 1.63 5.47 84.66 0.46 2.09 16 14 N -0.94 -57.46 13.96 21.45 0.30 -57.16 16 15 Si 0.93 44.98 24.91 68.60 1.71 46.69 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 18 H -0.24 -11.28 5.58 99.48 0.55 -10.73 16 19 C -0.15 -5.38 9.93 30.62 0.30 -5.07 16 20 C -0.19 -7.52 7.57 30.62 0.23 -7.29 16 21 C -0.08 -1.60 0.62 -52.18 -0.03 -1.63 16 22 C -0.12 -3.39 7.07 71.98 0.51 -2.88 16 23 C -0.14 -2.26 7.96 71.98 0.57 -1.69 16 24 C -0.14 -2.21 8.13 71.98 0.58 -1.62 16 25 H 0.04 0.95 7.75 -2.39 -0.02 0.93 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.09 1.15 6.71 -2.39 -0.02 1.13 16 29 H 0.10 1.25 6.17 -2.39 -0.01 1.24 16 30 H 0.40 9.15 8.62 -92.71 -0.80 8.35 16 31 H 0.40 14.35 8.17 -92.71 -0.76 13.60 16 32 H 0.03 1.46 6.46 -2.39 -0.02 1.44 16 33 H 0.05 2.01 8.09 -2.39 -0.02 1.99 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.08 3.23 7.19 -2.39 -0.02 3.21 16 38 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.03 1.12 7.63 -2.39 -0.02 1.10 16 40 H 0.03 1.02 5.86 -2.39 -0.01 1.01 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 42 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 0.96 6.54 -2.38 -0.02 0.94 16 44 H 0.05 0.87 7.60 -2.39 -0.02 0.86 16 45 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.08 0.93 6.32 -2.39 -0.02 0.92 16 47 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -67.49 356.50 2.35 -65.14 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.76 Total: 34.05 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 5.40 Total: -9.37 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -3.94 Total: -108.44 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.06 Total: -28.06 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.71 Total: 46.69 kcal Total: -67.49 2.35 -65.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430575906.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.513 kcal (2) G-P(sol) polarization free energy of solvation -67.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds