Wall clock time and date at job start Tue Mar 31 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46961 * 2 1 4 4 H 1.08993 * 109.47319 * 305.00092 * 3 2 1 5 5 C 1.53006 * 109.47201 * 65.00173 * 3 2 1 6 6 C 1.53007 * 109.46978 * 184.99862 * 3 2 1 7 7 C 1.52996 * 109.46778 * 61.37059 * 6 3 2 8 8 H 1.09000 * 109.47171 * 297.13302 * 7 6 3 9 9 C 1.53004 * 109.46965 * 177.13193 * 7 6 3 10 10 N 1.46498 * 109.47132 * 57.13281 * 7 6 3 11 11 C 1.34779 * 119.99809 * 204.99395 * 10 7 6 12 12 O 1.21582 * 120.00311 * 0.02562 * 11 10 7 13 13 N 1.34779 * 119.99601 * 179.97438 * 11 10 7 14 14 C 1.46506 * 119.99538 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47052 * 184.78160 * 14 13 11 16 16 C 1.50700 * 115.54856 * 294.49663 * 15 14 13 17 17 H 1.08005 * 119.99641 * 95.46834 * 16 15 14 18 18 C 1.37871 * 120.00170 * 275.19361 * 16 15 14 19 19 N 1.31518 * 119.99706 * 355.47412 * 18 16 15 20 20 Si 1.86798 * 120.00154 * 175.47887 * 18 16 15 21 21 H 1.48497 * 109.47025 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47232 * 119.99947 * 20 18 16 23 23 H 1.48504 * 109.46780 * 239.99725 * 20 18 16 24 24 C 1.53002 * 117.49505 * 80.16539 * 15 14 13 25 25 C 1.52991 * 117.49693 * 148.82538 * 15 14 13 26 26 H 1.08998 * 109.46834 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47036 * 299.99847 * 1 2 3 28 28 H 1.09000 * 109.47233 * 60.00034 * 1 2 3 29 29 H 1.08997 * 109.47036 * 240.00153 * 2 1 3 30 30 H 1.09000 * 109.47233 * 119.99966 * 2 1 3 31 31 H 1.08993 * 109.47644 * 184.16981 * 5 3 2 32 32 H 1.09001 * 109.47124 * 304.17741 * 5 3 2 33 33 H 1.09007 * 109.46724 * 64.16960 * 5 3 2 34 34 H 1.09001 * 109.47086 * 301.36984 * 6 3 2 35 35 H 1.09003 * 109.47027 * 181.37074 * 6 3 2 36 36 H 1.09000 * 109.46970 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47265 * 300.00052 * 9 7 6 38 38 H 1.09001 * 109.46807 * 60.00029 * 9 7 6 39 39 H 0.96994 * 120.00070 * 24.99926 * 10 7 6 40 40 H 0.96994 * 120.00278 * 0.02562 * 13 11 10 41 41 H 1.08999 * 109.46936 * 64.78029 * 14 13 11 42 42 H 1.09000 * 109.47287 * 304.77953 * 14 13 11 43 43 H 0.96999 * 119.99984 * 185.00429 * 19 18 16 44 44 H 1.09001 * 117.49414 * 215.00317 * 24 15 14 45 45 H 1.08995 * 117.50014 * 0.02562 * 24 15 14 46 46 H 1.09000 * 117.50390 * 359.97438 * 25 15 14 47 47 H 1.09006 * 117.49644 * 144.97904 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5649 1.4443 -0.1257 7 6 3.9682 0.7909 -1.4490 8 1 3.6473 -0.2508 -1.4524 9 6 5.4886 0.8567 -1.6077 10 7 3.3300 1.5021 -2.5594 11 6 3.1062 0.8668 -3.7267 12 8 3.4335 -0.2967 -3.8582 13 7 2.5186 1.5211 -4.7481 14 6 2.2748 0.8303 -6.0169 15 6 1.7123 1.8217 -7.0375 16 6 0.3505 2.3819 -6.7172 17 1 0.2627 3.3335 -6.2140 18 6 -0.7835 1.6822 -7.0715 19 7 -0.6799 0.5708 -7.7669 20 14 -2.4669 2.3129 -6.5639 21 1 -2.3117 3.5731 -5.7938 22 1 -3.2852 2.5706 -7.7760 23 1 -3.1419 1.2962 -5.7178 24 6 2.7055 2.7426 -7.7492 25 6 2.0511 1.5873 -8.5109 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.9334 3.1745 1.2767 32 1 0.5545 2.0598 1.4330 33 1 2.1294 1.6325 2.1440 34 1 3.9984 0.8846 0.7030 35 1 3.9302 2.4710 -0.1012 36 1 5.7759 0.3916 -2.5507 37 1 5.8095 1.8984 -1.6042 38 1 5.9633 0.3275 -0.7815 39 1 3.0686 2.4303 -2.4544 40 1 2.2571 2.4492 -4.6432 41 1 1.5579 0.0244 -5.8599 42 1 3.2111 0.4159 -6.3908 43 1 -1.4788 0.1173 -8.0784 44 1 2.3738 3.7536 -7.9858 45 1 3.7596 2.6418 -7.4907 46 1 2.6751 0.7270 -8.7532 47 1 1.2888 1.8379 -9.2486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430853113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:06 Heat of formation + Delta-G solvation = -39.301028 kcal Electronic energy + Delta-G solvation = -23223.006639 eV Core-core repulsion = 20019.468304 eV Total energy + Delta-G solvation = -3203.538336 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.66179 -37.72879 -36.60624 -34.55533 -33.21428 -31.94811 -30.91124 -29.78755 -26.93929 -26.14233 -25.02160 -23.53907 -21.57329 -21.10478 -20.37978 -19.57728 -19.31084 -17.71938 -16.29386 -15.77336 -15.26138 -14.90569 -14.70577 -14.55180 -14.17165 -13.93236 -13.67885 -13.32082 -13.23654 -12.85748 -12.58288 -12.30489 -12.18955 -12.05238 -11.81147 -11.69227 -11.55572 -11.32874 -11.13691 -10.99929 -10.92001 -10.63318 -10.51036 -10.44679 -10.21710 -10.18492 -9.65604 -9.41520 -9.00560 -8.75547 -8.46839 -8.20811 -7.93568 -6.05793 -4.15163 3.25079 3.30074 3.34361 3.35782 3.86769 4.35922 4.60923 4.71451 4.81652 4.89832 5.16172 5.22512 5.27009 5.37059 5.41846 5.43831 5.53546 5.57177 5.58920 5.70057 5.76842 5.82198 5.90440 5.97870 6.05785 6.06752 6.14829 6.24769 6.30418 6.37827 6.39900 6.43118 6.51519 6.63237 6.73416 6.89491 6.93018 7.14572 7.38373 7.45468 7.50215 7.67623 7.82983 8.36442 8.73175 8.86365 9.27962 9.51746 11.01560 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.005005 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.083208 B = 5592.859925 C = 6870.808197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.093 4.093 4 H 0.074 0.926 5 C -0.148 4.148 6 C -0.121 4.121 7 C 0.159 3.841 8 H 0.088 0.912 9 C -0.163 4.163 10 N -0.747 5.747 11 C 0.698 3.302 12 O -0.605 6.605 13 N -0.722 5.722 14 C 0.183 3.817 15 C 0.024 3.976 16 C -0.497 4.497 17 H 0.059 0.941 18 C 0.073 3.927 19 N -0.874 5.874 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.211 4.211 25 C -0.142 4.142 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.391 0.609 40 H 0.395 0.605 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.261 0.739 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 3.264 15.305 17.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.111 4.111 4 H 0.093 0.907 5 C -0.205 4.205 6 C -0.159 4.159 7 C 0.054 3.946 8 H 0.106 0.894 9 C -0.222 4.222 10 N -0.403 5.403 11 C 0.398 3.602 12 O -0.485 6.485 13 N -0.375 5.375 14 C 0.059 3.941 15 C 0.023 3.977 16 C -0.535 4.535 17 H 0.077 0.923 18 C -0.131 4.131 19 N -0.511 5.511 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.248 4.248 25 C -0.180 4.180 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.225 0.775 40 H 0.229 0.771 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.886 1.976 15.119 16.730 hybrid contribution -1.250 1.138 0.200 1.702 sum 5.636 3.114 15.318 16.617 Atomic orbital electron populations 1.21810 0.96029 1.01495 1.01730 1.21614 0.95942 0.96275 1.02066 1.21160 0.94944 0.96720 0.98297 0.90727 1.21889 1.01482 1.00011 0.97151 1.21956 0.95987 1.01236 0.96753 1.20757 0.91803 0.97542 0.84515 0.89369 1.22211 0.96011 1.01611 1.02379 1.45188 1.67061 1.15276 1.12789 1.16060 0.78916 0.84930 0.80271 1.90857 1.59221 1.15785 1.82616 1.45161 1.63314 1.15663 1.13329 1.20820 0.97418 0.94758 0.81060 1.19067 0.93413 0.95237 0.89945 1.20368 0.88390 1.05105 1.39594 0.92262 1.24978 0.98912 0.94479 0.94700 1.70002 1.28865 1.16878 1.35314 0.86597 0.84439 0.78822 0.78476 1.19767 1.21053 1.20981 1.23001 0.96445 0.95756 1.09593 1.22463 1.01291 0.96979 0.97315 0.93029 0.92913 0.92511 0.91242 0.92464 0.92975 0.92438 0.92979 0.90733 0.91576 0.91939 0.92875 0.92241 0.77548 0.77126 0.91814 0.94536 0.92957 0.90492 0.91761 0.91827 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.67 37.16 0.36 -1.40 16 2 C -0.12 -1.37 5.21 -26.73 -0.14 -1.51 16 3 C -0.09 -0.93 2.26 -90.61 -0.20 -1.14 16 4 H 0.07 0.85 7.22 -51.93 -0.37 0.47 16 5 C -0.15 -1.27 9.04 37.16 0.34 -0.93 16 6 C -0.12 -1.12 4.33 -26.73 -0.12 -1.24 16 7 C 0.16 1.95 2.27 -67.93 -0.15 1.79 16 8 H 0.09 1.28 5.94 -51.93 -0.31 0.97 16 9 C -0.16 -1.88 9.48 37.16 0.35 -1.52 16 10 N -0.75 -10.42 4.33 -58.68 -0.25 -10.67 16 11 C 0.70 13.24 8.53 -86.91 -0.74 12.50 16 12 O -0.61 -13.82 16.00 5.29 0.08 -13.73 16 13 N -0.72 -14.14 5.49 -65.22 -0.36 -14.50 16 14 C 0.18 4.22 5.50 -4.04 -0.02 4.20 16 15 C 0.02 0.57 1.46 -155.66 -0.23 0.34 16 16 C -0.50 -12.77 8.61 -34.44 -0.30 -13.06 16 17 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 18 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 19 N -0.87 -24.35 12.66 55.43 0.70 -23.65 16 20 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.21 -4.43 9.96 -26.69 -0.27 -4.69 16 25 C -0.14 -3.29 9.16 -26.70 -0.24 -3.54 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.53 6.48 -51.93 -0.34 0.19 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.95 6.28 -51.93 -0.33 0.62 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.50 6.38 -51.93 -0.33 0.17 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.39 4.56 8.22 -40.82 -0.34 4.23 16 40 H 0.40 7.07 8.36 -40.82 -0.34 6.73 16 41 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 42 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 43 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 44 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 47 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -29.50 375.48 -9.31 -38.81 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -8.66 Total: 10.86 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -1.46 Total: -8.35 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.09 Total: -48.83 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.08 Total: -13.73 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.50 -9.31 -38.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430853113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.495 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds