Wall clock time and date at job start Tue Mar 31 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46961 * 2 1 4 4 H 1.08993 * 109.47319 * 305.00092 * 3 2 1 5 5 C 1.53006 * 109.47201 * 65.00173 * 3 2 1 6 6 C 1.53007 * 109.46978 * 184.99862 * 3 2 1 7 7 C 1.52996 * 109.46778 * 61.37059 * 6 3 2 8 8 H 1.09000 * 109.47171 * 297.13302 * 7 6 3 9 9 C 1.53004 * 109.46965 * 177.13193 * 7 6 3 10 10 N 1.46498 * 109.47132 * 57.13281 * 7 6 3 11 11 C 1.34779 * 119.99809 * 204.99395 * 10 7 6 12 12 O 1.21582 * 120.00311 * 0.02562 * 11 10 7 13 13 N 1.34779 * 119.99601 * 179.97438 * 11 10 7 14 14 C 1.46506 * 119.99538 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47052 * 184.78160 * 14 13 11 16 16 C 1.50700 * 115.54856 * 294.49663 * 15 14 13 17 17 H 1.08005 * 119.99641 * 95.46834 * 16 15 14 18 18 C 1.37871 * 120.00170 * 275.19361 * 16 15 14 19 19 N 1.31518 * 119.99706 * 355.47412 * 18 16 15 20 20 Si 1.86798 * 120.00154 * 175.47887 * 18 16 15 21 21 H 1.48497 * 109.47025 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47232 * 119.99947 * 20 18 16 23 23 H 1.48504 * 109.46780 * 239.99725 * 20 18 16 24 24 C 1.53002 * 117.49505 * 80.16539 * 15 14 13 25 25 C 1.52991 * 117.49693 * 148.82538 * 15 14 13 26 26 H 1.08998 * 109.46834 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47036 * 299.99847 * 1 2 3 28 28 H 1.09000 * 109.47233 * 60.00034 * 1 2 3 29 29 H 1.08997 * 109.47036 * 240.00153 * 2 1 3 30 30 H 1.09000 * 109.47233 * 119.99966 * 2 1 3 31 31 H 1.08993 * 109.47644 * 184.16981 * 5 3 2 32 32 H 1.09001 * 109.47124 * 304.17741 * 5 3 2 33 33 H 1.09007 * 109.46724 * 64.16960 * 5 3 2 34 34 H 1.09001 * 109.47086 * 301.36984 * 6 3 2 35 35 H 1.09003 * 109.47027 * 181.37074 * 6 3 2 36 36 H 1.09000 * 109.46970 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47265 * 300.00052 * 9 7 6 38 38 H 1.09001 * 109.46807 * 60.00029 * 9 7 6 39 39 H 0.96994 * 120.00070 * 24.99926 * 10 7 6 40 40 H 0.96994 * 120.00278 * 0.02562 * 13 11 10 41 41 H 1.08999 * 109.46936 * 64.78029 * 14 13 11 42 42 H 1.09000 * 109.47287 * 304.77953 * 14 13 11 43 43 H 0.96999 * 119.99984 * 185.00429 * 19 18 16 44 44 H 1.09001 * 117.49414 * 215.00317 * 24 15 14 45 45 H 1.08995 * 117.50014 * 0.02562 * 24 15 14 46 46 H 1.09000 * 117.50390 * 359.97438 * 25 15 14 47 47 H 1.09006 * 117.49644 * 144.97904 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5649 1.4443 -0.1257 7 6 3.9682 0.7909 -1.4490 8 1 3.6473 -0.2508 -1.4524 9 6 5.4886 0.8567 -1.6077 10 7 3.3300 1.5021 -2.5594 11 6 3.1062 0.8668 -3.7267 12 8 3.4335 -0.2967 -3.8582 13 7 2.5186 1.5211 -4.7481 14 6 2.2748 0.8303 -6.0169 15 6 1.7123 1.8217 -7.0375 16 6 0.3505 2.3819 -6.7172 17 1 0.2627 3.3335 -6.2140 18 6 -0.7835 1.6822 -7.0715 19 7 -0.6799 0.5708 -7.7669 20 14 -2.4669 2.3129 -6.5639 21 1 -2.3117 3.5731 -5.7938 22 1 -3.2852 2.5706 -7.7760 23 1 -3.1419 1.2962 -5.7178 24 6 2.7055 2.7426 -7.7492 25 6 2.0511 1.5873 -8.5109 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.9334 3.1745 1.2767 32 1 0.5545 2.0598 1.4330 33 1 2.1294 1.6325 2.1440 34 1 3.9984 0.8846 0.7030 35 1 3.9302 2.4710 -0.1012 36 1 5.7759 0.3916 -2.5507 37 1 5.8095 1.8984 -1.6042 38 1 5.9633 0.3275 -0.7815 39 1 3.0686 2.4303 -2.4544 40 1 2.2571 2.4492 -4.6432 41 1 1.5579 0.0244 -5.8599 42 1 3.2111 0.4159 -6.3908 43 1 -1.4788 0.1173 -8.0784 44 1 2.3738 3.7536 -7.9858 45 1 3.7596 2.6418 -7.4907 46 1 2.6751 0.7270 -8.7532 47 1 1.2888 1.8379 -9.2486 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430853113.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:05 Heat of formation + Delta-G solvation = -56.348464 kcal Electronic energy + Delta-G solvation = -23223.745872 eV Core-core repulsion = 20019.468304 eV Total energy + Delta-G solvation = -3204.277568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08118 -38.97265 -38.21847 -35.67722 -34.91455 -33.94921 -32.06135 -30.70358 -28.02396 -27.69426 -26.89398 -24.43623 -23.00460 -22.55260 -21.73592 -21.23984 -20.45382 -19.26775 -18.04910 -17.18871 -16.70644 -16.34740 -16.03717 -15.78201 -15.62386 -15.48505 -14.93737 -14.63023 -14.42397 -14.20122 -13.82432 -13.69896 -13.43397 -13.15798 -12.95895 -12.91649 -12.86500 -12.79757 -12.60781 -12.33371 -12.27693 -12.06396 -12.01355 -11.46502 -11.42858 -11.28893 -11.16197 -11.07751 -10.92957 -10.44116 -10.18841 -10.01952 -9.53811 -8.08584 -6.22358 1.40200 1.44081 1.52897 1.91642 2.32606 2.42332 3.19817 3.37894 3.65471 3.78339 3.90511 4.00013 4.24510 4.26613 4.36944 4.43048 4.57196 4.62675 4.67069 4.70205 4.75110 4.76004 4.81568 4.84651 4.93041 4.97738 5.01528 5.04461 5.12208 5.14454 5.21377 5.25773 5.29700 5.36718 5.37816 5.55361 5.57400 5.59473 5.64557 5.72789 5.78417 5.80878 6.23295 6.38089 6.85303 7.31126 7.47169 7.76761 8.98874 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014594 B = 0.005005 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.083208 B = 5592.859925 C = 6870.808197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.092 4.092 4 H 0.058 0.942 5 C -0.143 4.143 6 C -0.110 4.110 7 C 0.155 3.845 8 H 0.061 0.939 9 C -0.158 4.158 10 N -0.726 5.726 11 C 0.696 3.304 12 O -0.647 6.647 13 N -0.718 5.718 14 C 0.202 3.798 15 C 0.003 3.997 16 C -0.499 4.499 17 H 0.064 0.936 18 C 0.024 3.976 19 N -0.909 5.909 20 Si 0.948 3.052 21 H -0.260 1.260 22 H -0.283 1.283 23 H -0.291 1.291 24 C -0.175 4.175 25 C -0.154 4.154 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.028 0.972 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.406 0.594 40 H 0.406 0.594 41 H 0.019 0.981 42 H 0.032 0.968 43 H 0.258 0.742 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 5.516 17.648 19.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.111 4.111 4 H 0.077 0.923 5 C -0.200 4.200 6 C -0.147 4.147 7 C 0.050 3.950 8 H 0.079 0.921 9 C -0.216 4.216 10 N -0.382 5.382 11 C 0.396 3.604 12 O -0.530 6.530 13 N -0.371 5.371 14 C 0.076 3.924 15 C 0.002 3.998 16 C -0.537 4.537 17 H 0.082 0.918 18 C -0.177 4.177 19 N -0.546 5.546 20 Si 0.774 3.226 21 H -0.184 1.184 22 H -0.209 1.209 23 H -0.217 1.217 24 C -0.212 4.212 25 C -0.192 4.192 26 H 0.066 0.934 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.242 0.758 40 H 0.241 0.759 41 H 0.038 0.962 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.682 4.292 17.506 19.593 hybrid contribution -1.460 0.410 -0.494 1.595 sum 6.222 4.702 17.012 18.714 Atomic orbital electron populations 1.21812 0.96383 1.01265 1.01574 1.21596 0.95652 0.97302 1.01254 1.21141 0.95469 0.95570 0.98875 0.92327 1.21841 1.01397 1.00547 0.96240 1.21909 0.95345 1.02408 0.95062 1.20951 0.92353 0.96402 0.85288 0.92114 1.22152 0.95183 1.02714 1.01551 1.45062 1.65876 1.15830 1.11428 1.16224 0.78538 0.84439 0.81197 1.90828 1.60854 1.17827 1.83503 1.44926 1.63654 1.15924 1.12639 1.20349 0.95777 0.93739 0.82492 1.19087 0.93858 0.96689 0.90187 1.20673 0.89329 1.04993 1.38703 0.91791 1.25698 1.02302 0.94769 0.94919 1.70126 1.29464 1.18225 1.36834 0.85661 0.80445 0.78465 0.77999 1.18361 1.20921 1.21730 1.22977 0.96907 0.95151 1.06201 1.22385 1.01549 0.98591 0.96683 0.93385 0.90992 0.94632 0.94397 0.90876 0.91875 0.92798 0.91770 0.88763 0.89406 0.95229 0.91106 0.89957 0.75775 0.75927 0.96215 0.94992 0.93282 0.89572 0.89554 0.91408 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.67 71.98 0.70 -2.77 16 2 C -0.12 -2.63 5.21 30.59 0.16 -2.47 16 3 C -0.09 -1.65 2.26 -10.79 -0.02 -1.68 16 4 H 0.06 1.24 7.22 -2.39 -0.02 1.22 16 5 C -0.14 -1.98 9.04 71.98 0.65 -1.33 16 6 C -0.11 -1.69 4.33 30.60 0.13 -1.56 16 7 C 0.15 3.59 2.27 44.99 0.10 3.69 16 8 H 0.06 1.79 5.94 -2.39 -0.01 1.78 16 9 C -0.16 -3.33 9.48 71.98 0.68 -2.64 16 10 N -0.73 -19.61 4.33 -457.81 -1.98 -21.60 16 11 C 0.70 26.69 8.53 179.05 1.53 28.22 16 12 O -0.65 -30.63 16.00 -3.98 -0.06 -30.69 16 13 N -0.72 -28.21 5.49 -478.52 -2.63 -30.83 16 14 C 0.20 9.52 5.50 86.38 0.48 9.99 16 15 C 0.00 0.12 1.46 -52.93 -0.08 0.05 16 16 C -0.50 -25.56 8.61 25.60 0.22 -25.34 16 17 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 18 C 0.02 1.26 5.43 84.65 0.46 1.72 16 19 N -0.91 -51.95 12.66 21.45 0.27 -51.68 16 20 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 21 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 24 C -0.18 -7.07 9.96 30.62 0.30 -6.77 16 25 C -0.15 -7.16 9.16 30.62 0.28 -6.88 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.33 6.48 -2.39 -0.02 1.32 16 28 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.04 1.06 6.28 -2.39 -0.01 1.05 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.79 6.38 -2.39 -0.02 0.78 16 33 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.41 8.67 8.22 -92.71 -0.76 7.91 16 40 H 0.41 14.12 8.36 -92.71 -0.77 13.34 16 41 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.03 1.51 8.09 -2.39 -0.02 1.49 16 43 H 0.26 14.21 8.32 -92.71 -0.77 13.44 16 44 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 45 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 46 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 47 H 0.07 3.30 8.14 -2.38 -0.02 3.28 16 Total: -1.00 -65.79 375.48 2.62 -63.17 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: -0.60 Total: 34.86 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 5.59 Total: -7.76 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -4.34 Total: -104.11 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.06 Total: -30.69 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -65.79 2.62 -63.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430853113.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.819 kcal (2) G-P(sol) polarization free energy of solvation -65.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds