Wall clock time and date at job start Tue Mar 31 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 H 1.09004 * 109.46718 * 55.00498 * 3 2 1 5 5 C 1.52995 * 109.47597 * 295.00537 * 3 2 1 6 6 C 1.53001 * 109.47173 * 174.99981 * 3 2 1 7 7 C 1.53001 * 109.47219 * 294.12931 * 6 3 2 8 8 H 1.09010 * 109.46820 * 54.50114 * 7 6 3 9 9 C 1.52994 * 109.46984 * 174.49760 * 7 6 3 10 10 N 1.46492 * 109.47379 * 294.50433 * 7 6 3 11 11 C 1.34771 * 120.00343 * 155.00119 * 10 7 6 12 12 O 1.21586 * 120.00104 * 359.97438 * 11 10 7 13 13 N 1.34779 * 120.00553 * 179.97438 * 11 10 7 14 14 C 1.46500 * 120.00361 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47265 * 175.63870 * 14 13 11 16 16 C 1.50703 * 115.54828 * 65.02269 * 15 14 13 17 17 H 1.07995 * 120.00515 * 264.69947 * 16 15 14 18 18 C 1.37873 * 119.99823 * 84.70391 * 16 15 14 19 19 N 1.31520 * 120.00155 * 1.98128 * 18 16 15 20 20 Si 1.86805 * 120.00344 * 181.98438 * 18 16 15 21 21 H 1.48496 * 109.46953 * 89.99345 * 20 18 16 22 22 H 1.48501 * 109.47204 * 209.99862 * 20 18 16 23 23 H 1.48500 * 109.46846 * 329.99735 * 20 18 16 24 24 C 1.53005 * 117.50042 * 279.35868 * 15 14 13 25 25 C 1.52997 * 117.49964 * 210.69572 * 15 14 13 26 26 H 1.09007 * 109.46655 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46886 * 299.99229 * 1 2 3 28 28 H 1.09000 * 109.47066 * 59.99882 * 1 2 3 29 29 H 1.08999 * 109.47312 * 240.00571 * 2 1 3 30 30 H 1.08999 * 109.47532 * 120.00363 * 2 1 3 31 31 H 1.09009 * 109.46515 * 306.64568 * 5 3 2 32 32 H 1.08997 * 109.47341 * 66.64042 * 5 3 2 33 33 H 1.08996 * 109.47786 * 186.64518 * 5 3 2 34 34 H 1.09001 * 109.47020 * 54.12961 * 6 3 2 35 35 H 1.08998 * 109.46869 * 174.13280 * 6 3 2 36 36 H 1.09000 * 109.47220 * 60.00484 * 9 7 6 37 37 H 1.09002 * 109.47000 * 180.02562 * 9 7 6 38 38 H 1.09004 * 109.47868 * 300.00132 * 9 7 6 39 39 H 0.97003 * 119.99916 * 334.99456 * 10 7 6 40 40 H 0.97003 * 119.99706 * 359.97438 * 13 11 10 41 41 H 1.08999 * 109.47016 * 295.63712 * 14 13 11 42 42 H 1.08995 * 109.47118 * 55.63905 * 14 13 11 43 43 H 0.97001 * 120.00080 * 185.02632 * 19 18 16 44 44 H 1.08998 * 117.49263 * 359.97438 * 24 15 14 45 45 H 1.08997 * 117.50231 * 145.01480 * 24 15 14 46 46 H 1.08996 * 117.49852 * 214.97502 * 25 15 14 47 47 H 1.08994 * 117.50203 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 3.5648 1.4444 0.1257 7 6 3.9643 0.8939 1.4962 8 1 3.5106 -0.0868 1.6401 9 6 5.4871 0.7671 1.5708 10 7 3.4982 1.8058 2.5436 11 6 3.2694 1.3421 3.7882 12 8 3.4493 0.1666 4.0416 13 7 2.8411 2.1812 4.7520 14 6 2.5918 1.6769 6.1047 15 6 2.2226 2.8431 7.0238 16 6 0.9300 3.5451 6.6957 17 1 0.9392 4.4364 6.0860 18 6 -0.2643 3.0494 7.1741 19 7 -0.2721 1.9866 7.9488 20 14 -1.8715 3.8873 6.7219 21 1 -2.4082 3.2878 5.4739 22 1 -2.8524 3.7028 7.8215 23 1 -1.6314 5.3375 6.5110 24 6 3.3663 3.6929 7.5811 25 6 2.6101 2.7296 8.4995 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.9694 1.5236 -2.1515 32 1 0.5508 2.2311 -1.3420 33 1 2.0969 3.1126 -1.3596 34 1 3.9946 0.8188 -0.6565 35 1 3.9367 2.4637 0.0212 36 1 5.9408 1.7477 1.4269 37 1 5.7717 0.3744 2.5470 38 1 5.8339 0.0885 0.7914 39 1 3.3544 2.7436 2.3415 40 1 2.6979 3.1191 4.5500 41 1 1.7711 0.9601 6.0797 42 1 3.4901 1.1878 6.4814 43 1 -1.1150 1.5946 8.2259 44 1 4.3818 3.4209 7.2933 45 1 3.1838 4.7596 7.7108 46 1 1.9304 3.1631 9.2331 47 1 3.1277 1.8240 8.8157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430853114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:09 Heat of formation + Delta-G solvation = -40.686892 kcal Electronic energy + Delta-G solvation = -23119.488685 eV Core-core repulsion = 19915.890254 eV Total energy + Delta-G solvation = -3203.598431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.63288 -37.72188 -36.61635 -34.59693 -33.20922 -31.95035 -30.90150 -29.81463 -26.92195 -26.13423 -25.03179 -23.58113 -21.54119 -21.09666 -20.29106 -19.70625 -19.33862 -17.70310 -16.29932 -15.78165 -15.26227 -14.87912 -14.69507 -14.55284 -14.20229 -13.91504 -13.65232 -13.31754 -13.22715 -12.85716 -12.58930 -12.36562 -12.19546 -12.11055 -11.80893 -11.68536 -11.56379 -11.35928 -11.13124 -10.98761 -10.91084 -10.63261 -10.52112 -10.48504 -10.23024 -10.20915 -9.65847 -9.42081 -9.00985 -8.75472 -8.46144 -8.20537 -7.93061 -6.06336 -4.15269 3.26385 3.30441 3.34208 3.35109 3.87011 4.36418 4.59815 4.70426 4.80702 4.89857 5.13630 5.22950 5.29564 5.36212 5.40987 5.42822 5.50533 5.54995 5.58437 5.68691 5.75760 5.82466 5.90124 5.96717 6.04880 6.06160 6.11136 6.21851 6.29401 6.37485 6.39188 6.41118 6.51223 6.63291 6.73133 6.89597 6.93524 7.13983 7.38673 7.46241 7.49504 7.67561 7.82235 8.36110 8.73501 8.86206 9.28281 9.51787 11.01817 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.004827 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.330008 B = 5799.633926 C = 7033.321105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.095 4.095 4 H 0.076 0.924 5 C -0.146 4.146 6 C -0.121 4.121 7 C 0.159 3.841 8 H 0.089 0.911 9 C -0.163 4.163 10 N -0.747 5.747 11 C 0.698 3.302 12 O -0.605 6.605 13 N -0.722 5.722 14 C 0.183 3.817 15 C 0.025 3.975 16 C -0.497 4.497 17 H 0.059 0.941 18 C 0.074 3.926 19 N -0.875 5.875 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.211 4.211 25 C -0.143 4.143 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.391 0.609 40 H 0.395 0.605 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.261 0.739 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.184 0.273 -16.093 17.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.204 4.204 6 C -0.159 4.159 7 C 0.053 3.947 8 H 0.107 0.893 9 C -0.222 4.222 10 N -0.403 5.403 11 C 0.398 3.602 12 O -0.485 6.485 13 N -0.374 5.374 14 C 0.060 3.940 15 C 0.025 3.975 16 C -0.535 4.535 17 H 0.077 0.923 18 C -0.130 4.130 19 N -0.511 5.511 20 Si 0.716 3.284 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.248 4.248 25 C -0.182 4.182 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.224 0.776 40 H 0.229 0.771 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.104 0.896 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.207 -0.921 -15.654 16.865 hybrid contribution -1.107 1.245 -0.331 1.698 sum 5.100 0.323 -15.986 16.783 Atomic orbital electron populations 1.21803 0.96013 1.01442 1.01803 1.21632 0.95967 0.96288 1.01977 1.21182 0.95025 0.96663 0.98439 0.90604 1.21868 1.01337 1.00056 0.97104 1.21956 0.95947 1.01657 0.96337 1.20777 0.93801 0.94501 0.85613 0.89323 1.22208 0.96075 1.01455 1.02471 1.45195 1.73854 1.12151 1.09150 1.16061 0.78362 0.85326 0.80445 1.90857 1.60368 1.15690 1.81566 1.45157 1.70117 1.11634 1.10534 1.20805 0.98106 0.96335 0.78791 1.19056 0.92821 0.93959 0.91710 1.20339 0.89320 1.11218 1.32578 0.92325 1.24972 0.98894 0.95222 0.93934 1.69995 1.26366 1.21396 1.33326 0.86659 0.83714 0.79932 0.78105 1.20672 1.21226 1.19885 1.23006 0.95691 0.97011 1.09101 1.22472 1.01702 0.98573 0.95425 0.93041 0.92538 0.92883 0.92388 0.91396 0.92970 0.92604 0.92908 0.90708 0.91536 0.92871 0.91946 0.92243 0.77560 0.77126 0.91726 0.94589 0.92904 0.91734 0.90484 0.89640 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 37.16 0.36 -1.32 16 2 C -0.12 -1.31 5.28 -26.73 -0.14 -1.45 16 3 C -0.09 -0.95 2.33 -90.62 -0.21 -1.16 16 4 H 0.08 0.90 7.62 -51.93 -0.40 0.50 16 5 C -0.15 -1.25 8.78 37.16 0.33 -0.93 16 6 C -0.12 -1.12 4.21 -26.73 -0.11 -1.23 16 7 C 0.16 1.95 2.46 -67.94 -0.17 1.78 16 8 H 0.09 1.29 5.70 -51.92 -0.30 1.00 16 9 C -0.16 -1.88 9.48 37.15 0.35 -1.53 16 10 N -0.75 -10.49 4.46 -58.68 -0.26 -10.75 16 11 C 0.70 13.31 8.53 -86.92 -0.74 12.56 16 12 O -0.61 -13.88 16.00 5.29 0.08 -13.79 16 13 N -0.72 -14.18 5.48 -65.23 -0.36 -14.54 16 14 C 0.18 4.23 5.50 -4.04 -0.02 4.21 16 15 C 0.03 0.60 1.44 -155.66 -0.22 0.37 16 16 C -0.50 -12.77 8.59 -34.44 -0.30 -13.07 16 17 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 18 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 19 N -0.87 -24.38 12.72 55.43 0.71 -23.68 16 20 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 24 C -0.21 -4.43 9.96 -26.69 -0.27 -4.70 16 25 C -0.14 -3.32 9.23 -26.69 -0.25 -3.57 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.51 6.72 -51.93 -0.35 0.16 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.87 6.28 -51.93 -0.33 0.54 16 31 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.05 0.49 6.90 -51.93 -0.36 0.13 16 33 H 0.05 0.42 8.13 -51.93 -0.42 0.00 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.39 4.57 8.62 -40.82 -0.35 4.21 16 40 H 0.40 7.08 8.34 -40.82 -0.34 6.74 16 41 H 0.06 1.71 8.14 -51.93 -0.42 1.28 16 42 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 43 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 47 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 376.94 15.07 5.68 5.68 Total: -1.00 -29.58 376.94 -9.38 -38.96 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -8.72 Total: 10.72 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.49 Total: -8.18 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.09 Total: -48.97 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.08 Total: -13.79 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.58 -9.38 -38.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430853114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.730 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds