Wall clock time and date at job start Tue Mar 31 2020 05:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 H 1.09004 * 109.46718 * 55.00498 * 3 2 1 5 5 C 1.52995 * 109.47597 * 295.00537 * 3 2 1 6 6 C 1.53001 * 109.47173 * 174.99981 * 3 2 1 7 7 C 1.53001 * 109.47219 * 294.12931 * 6 3 2 8 8 H 1.09010 * 109.46820 * 54.50114 * 7 6 3 9 9 C 1.52994 * 109.46984 * 174.49760 * 7 6 3 10 10 N 1.46492 * 109.47379 * 294.50433 * 7 6 3 11 11 C 1.34771 * 120.00343 * 155.00119 * 10 7 6 12 12 O 1.21586 * 120.00104 * 359.97438 * 11 10 7 13 13 N 1.34779 * 120.00553 * 179.97438 * 11 10 7 14 14 C 1.46500 * 120.00361 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47265 * 175.63870 * 14 13 11 16 16 C 1.50703 * 115.54828 * 65.02269 * 15 14 13 17 17 H 1.07995 * 120.00515 * 264.69947 * 16 15 14 18 18 C 1.37873 * 119.99823 * 84.70391 * 16 15 14 19 19 N 1.31520 * 120.00155 * 1.98128 * 18 16 15 20 20 Si 1.86805 * 120.00344 * 181.98438 * 18 16 15 21 21 H 1.48496 * 109.46953 * 89.99345 * 20 18 16 22 22 H 1.48501 * 109.47204 * 209.99862 * 20 18 16 23 23 H 1.48500 * 109.46846 * 329.99735 * 20 18 16 24 24 C 1.53005 * 117.50042 * 279.35868 * 15 14 13 25 25 C 1.52997 * 117.49964 * 210.69572 * 15 14 13 26 26 H 1.09007 * 109.46655 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46886 * 299.99229 * 1 2 3 28 28 H 1.09000 * 109.47066 * 59.99882 * 1 2 3 29 29 H 1.08999 * 109.47312 * 240.00571 * 2 1 3 30 30 H 1.08999 * 109.47532 * 120.00363 * 2 1 3 31 31 H 1.09009 * 109.46515 * 306.64568 * 5 3 2 32 32 H 1.08997 * 109.47341 * 66.64042 * 5 3 2 33 33 H 1.08996 * 109.47786 * 186.64518 * 5 3 2 34 34 H 1.09001 * 109.47020 * 54.12961 * 6 3 2 35 35 H 1.08998 * 109.46869 * 174.13280 * 6 3 2 36 36 H 1.09000 * 109.47220 * 60.00484 * 9 7 6 37 37 H 1.09002 * 109.47000 * 180.02562 * 9 7 6 38 38 H 1.09004 * 109.47868 * 300.00132 * 9 7 6 39 39 H 0.97003 * 119.99916 * 334.99456 * 10 7 6 40 40 H 0.97003 * 119.99706 * 359.97438 * 13 11 10 41 41 H 1.08999 * 109.47016 * 295.63712 * 14 13 11 42 42 H 1.08995 * 109.47118 * 55.63905 * 14 13 11 43 43 H 0.97001 * 120.00080 * 185.02632 * 19 18 16 44 44 H 1.08998 * 117.49263 * 359.97438 * 24 15 14 45 45 H 1.08997 * 117.50231 * 145.01480 * 24 15 14 46 46 H 1.08996 * 117.49852 * 214.97502 * 25 15 14 47 47 H 1.08994 * 117.50203 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1267 -1.3072 6 6 3.5648 1.4444 0.1257 7 6 3.9643 0.8939 1.4962 8 1 3.5106 -0.0868 1.6401 9 6 5.4871 0.7671 1.5708 10 7 3.4982 1.8058 2.5436 11 6 3.2694 1.3421 3.7882 12 8 3.4493 0.1666 4.0416 13 7 2.8411 2.1812 4.7520 14 6 2.5918 1.6769 6.1047 15 6 2.2226 2.8431 7.0238 16 6 0.9300 3.5451 6.6957 17 1 0.9392 4.4364 6.0860 18 6 -0.2643 3.0494 7.1741 19 7 -0.2721 1.9866 7.9488 20 14 -1.8715 3.8873 6.7219 21 1 -2.4082 3.2878 5.4739 22 1 -2.8524 3.7028 7.8215 23 1 -1.6314 5.3375 6.5110 24 6 3.3663 3.6929 7.5811 25 6 2.6101 2.7296 8.4995 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.9694 1.5236 -2.1515 32 1 0.5508 2.2311 -1.3420 33 1 2.0969 3.1126 -1.3596 34 1 3.9946 0.8188 -0.6565 35 1 3.9367 2.4637 0.0212 36 1 5.9408 1.7477 1.4269 37 1 5.7717 0.3744 2.5470 38 1 5.8339 0.0885 0.7914 39 1 3.3544 2.7436 2.3415 40 1 2.6979 3.1191 4.5500 41 1 1.7711 0.9601 6.0797 42 1 3.4901 1.1878 6.4814 43 1 -1.1150 1.5946 8.2259 44 1 4.3818 3.4209 7.2933 45 1 3.1838 4.7596 7.7108 46 1 1.9304 3.1631 9.2331 47 1 3.1277 1.8240 8.8157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430853114.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:08 Heat of formation + Delta-G solvation = -57.833639 kcal Electronic energy + Delta-G solvation = -23120.232224 eV Core-core repulsion = 19915.890254 eV Total energy + Delta-G solvation = -3204.341970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06424 -38.95356 -38.22068 -35.72120 -34.91218 -33.95283 -32.04358 -30.71560 -28.00945 -27.68201 -26.90531 -24.45881 -23.00651 -22.53114 -21.65812 -21.22847 -20.58331 -19.25544 -18.04377 -17.20987 -16.70192 -16.33371 -16.02617 -15.77739 -15.64330 -15.46773 -14.92952 -14.57277 -14.41892 -14.19939 -13.82383 -13.69879 -13.44741 -13.17065 -13.02232 -12.92026 -12.83739 -12.82677 -12.55662 -12.35430 -12.29965 -12.04512 -12.02069 -11.45910 -11.44661 -11.32231 -11.15731 -11.08898 -10.92918 -10.42925 -10.18951 -10.02011 -9.53718 -8.09238 -6.22462 1.41931 1.43972 1.52046 1.91711 2.32277 2.42896 3.19849 3.37903 3.65205 3.77261 3.90172 4.00247 4.24195 4.26412 4.38929 4.43473 4.57185 4.63516 4.66903 4.69132 4.74179 4.75762 4.81578 4.84565 4.92711 4.97046 5.00970 5.04701 5.12699 5.15116 5.22420 5.24587 5.29249 5.36415 5.37048 5.54241 5.58261 5.59310 5.63857 5.72503 5.77783 5.80863 6.23278 6.37784 6.85048 7.31174 7.47175 7.76593 8.98819 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014562 B = 0.004827 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.330008 B = 5799.633926 C = 7033.321105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.094 4.094 4 H 0.053 0.947 5 C -0.141 4.141 6 C -0.109 4.109 7 C 0.154 3.846 8 H 0.061 0.939 9 C -0.157 4.157 10 N -0.726 5.726 11 C 0.696 3.304 12 O -0.647 6.647 13 N -0.718 5.718 14 C 0.202 3.798 15 C 0.004 3.996 16 C -0.500 4.500 17 H 0.064 0.936 18 C 0.024 3.976 19 N -0.909 5.909 20 Si 0.948 3.052 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.262 1.262 24 C -0.175 4.175 25 C -0.155 4.155 26 H 0.051 0.949 27 H 0.033 0.967 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.028 0.972 38 H 0.082 0.918 39 H 0.407 0.593 40 H 0.406 0.594 41 H 0.020 0.980 42 H 0.031 0.969 43 H 0.258 0.742 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.130 2.118 -18.679 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.113 4.113 4 H 0.072 0.928 5 C -0.199 4.199 6 C -0.147 4.147 7 C 0.049 3.951 8 H 0.079 0.921 9 C -0.216 4.216 10 N -0.383 5.383 11 C 0.396 3.604 12 O -0.530 6.530 13 N -0.371 5.371 14 C 0.076 3.924 15 C 0.003 3.997 16 C -0.537 4.537 17 H 0.082 0.918 18 C -0.176 4.176 19 N -0.547 5.547 20 Si 0.774 3.226 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.186 1.186 24 C -0.213 4.213 25 C -0.194 4.194 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.101 0.899 39 H 0.242 0.758 40 H 0.241 0.759 41 H 0.039 0.961 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.167 0.981 -18.292 19.671 hybrid contribution -1.371 0.637 0.439 1.574 sum 5.797 1.619 -17.853 18.840 Atomic orbital electron populations 1.21804 0.96353 1.01421 1.01460 1.21629 0.95706 0.97016 1.01492 1.21158 0.95555 0.95817 0.98748 0.92801 1.21819 1.01194 1.00610 0.96235 1.21908 0.95295 1.03051 0.94435 1.20976 0.94356 0.93179 0.86592 0.92063 1.22149 0.95179 1.02848 1.01412 1.45077 1.72330 1.13261 1.07598 1.16232 0.78050 0.84574 0.81594 1.90828 1.62075 1.17609 1.82523 1.44926 1.70394 1.12156 1.09641 1.20339 0.96116 0.95356 0.80548 1.19076 0.93663 0.94961 0.91994 1.20654 0.90167 1.11116 1.31792 0.91793 1.25696 1.02016 0.95797 0.94140 1.70123 1.26747 1.22964 1.34820 0.85711 0.80003 0.79499 0.77371 1.20796 1.21626 1.18587 1.22983 0.95721 0.96826 1.05721 1.22398 1.02345 0.99690 0.94918 0.92982 0.94809 0.91195 0.90536 0.94136 0.91702 0.93045 0.91827 0.88573 0.89481 0.91092 0.95237 0.89944 0.75757 0.75911 0.96111 0.95023 0.93310 0.89516 0.89569 0.91698 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.67 71.98 0.70 -2.61 16 2 C -0.12 -2.52 5.28 30.60 0.16 -2.36 16 3 C -0.09 -1.72 2.33 -10.79 -0.03 -1.74 16 4 H 0.05 1.22 7.62 -2.38 -0.02 1.20 16 5 C -0.14 -1.98 8.78 71.98 0.63 -1.35 16 6 C -0.11 -1.69 4.21 30.59 0.13 -1.57 16 7 C 0.15 3.59 2.46 44.99 0.11 3.70 16 8 H 0.06 1.81 5.70 -2.38 -0.01 1.80 16 9 C -0.16 -3.33 9.48 71.98 0.68 -2.65 16 10 N -0.73 -19.75 4.46 -457.83 -2.04 -21.79 16 11 C 0.70 26.79 8.53 179.06 1.53 28.32 16 12 O -0.65 -30.75 16.00 -3.99 -0.06 -30.81 16 13 N -0.72 -28.26 5.48 -478.54 -2.62 -30.89 16 14 C 0.20 9.52 5.50 86.38 0.48 10.00 16 15 C 0.00 0.18 1.44 -52.93 -0.08 0.11 16 16 C -0.50 -25.57 8.59 25.60 0.22 -25.35 16 17 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 18 C 0.02 1.28 5.43 84.65 0.46 1.74 16 19 N -0.91 -52.00 12.72 21.45 0.27 -51.73 16 20 Si 0.95 42.48 29.54 68.60 2.03 44.50 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 24 C -0.18 -7.07 9.96 30.62 0.30 -6.77 16 25 C -0.16 -7.22 9.23 30.62 0.28 -6.94 16 26 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.25 6.72 -2.39 -0.02 1.24 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.04 1.06 6.28 -2.39 -0.01 1.05 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.05 0.77 6.90 -2.39 -0.02 0.76 16 33 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 39 H 0.41 8.68 8.62 -92.71 -0.80 7.88 16 40 H 0.41 14.13 8.34 -92.71 -0.77 13.36 16 41 H 0.02 1.14 8.14 -2.39 -0.02 1.13 16 42 H 0.03 1.50 8.09 -2.39 -0.02 1.48 16 43 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 44 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 45 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 46 H 0.06 3.26 8.14 -2.39 -0.02 3.24 16 47 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -65.91 376.94 2.51 -63.39 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -0.64 Total: 34.81 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 5.58 Total: -7.48 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -4.39 Total: -104.40 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.06 Total: -30.81 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -65.91 2.51 -63.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430853114.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.560 kcal (2) G-P(sol) polarization free energy of solvation -65.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds