Wall clock time and date at job start Tue Mar 31 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47068 * 2 1 4 4 H 1.09004 * 109.47371 * 54.99613 * 3 2 1 5 5 C 1.53002 * 109.47111 * 295.00058 * 3 2 1 6 6 C 1.52999 * 109.47031 * 174.99930 * 3 2 1 7 7 C 1.52998 * 109.46951 * 184.99650 * 6 3 2 8 8 H 1.08998 * 109.47379 * 304.99927 * 7 6 3 9 9 C 1.53000 * 109.47240 * 184.99894 * 7 6 3 10 10 N 1.46507 * 109.47142 * 65.00109 * 7 6 3 11 11 C 1.34775 * 120.00086 * 204.99394 * 10 7 6 12 12 O 1.21594 * 119.99815 * 0.02562 * 11 10 7 13 13 N 1.34774 * 120.00178 * 180.02562 * 11 10 7 14 14 C 1.46499 * 120.00228 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47085 * 178.28701 * 14 13 11 16 16 C 1.50704 * 115.55025 * 65.13933 * 15 14 13 17 17 H 1.08003 * 120.00134 * 265.40571 * 16 15 14 18 18 C 1.37874 * 119.99910 * 85.40230 * 16 15 14 19 19 N 1.31517 * 120.00225 * 353.56029 * 18 16 15 20 20 Si 1.86799 * 120.00101 * 173.55568 * 18 16 15 21 21 H 1.48496 * 109.47449 * 90.00225 * 20 18 16 22 22 H 1.48503 * 109.47293 * 210.00390 * 20 18 16 23 23 H 1.48500 * 109.47122 * 329.99945 * 20 18 16 24 24 C 1.52995 * 117.49937 * 279.47185 * 15 14 13 25 25 C 1.52993 * 117.50032 * 210.80924 * 15 14 13 26 26 H 1.09002 * 109.46986 * 300.00512 * 1 2 3 27 27 H 1.08998 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47269 * 60.00101 * 1 2 3 29 29 H 1.09001 * 109.46642 * 119.99524 * 2 1 3 30 30 H 1.08994 * 109.47055 * 240.00129 * 2 1 3 31 31 H 1.08997 * 109.47177 * 59.99870 * 5 3 2 32 32 H 1.08998 * 109.47203 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.46639 * 300.00003 * 5 3 2 34 34 H 1.08996 * 109.47056 * 305.00009 * 6 3 2 35 35 H 1.08998 * 109.46913 * 64.99976 * 6 3 2 36 36 H 1.09003 * 109.47386 * 300.00154 * 9 7 6 37 37 H 1.09002 * 109.47101 * 59.99750 * 9 7 6 38 38 H 1.08998 * 109.47816 * 180.02562 * 9 7 6 39 39 H 0.96999 * 119.99872 * 24.99899 * 10 7 6 40 40 H 0.97008 * 119.99627 * 359.97438 * 13 11 10 41 41 H 1.08994 * 109.46906 * 298.28467 * 14 13 11 42 42 H 1.08998 * 109.47310 * 58.28888 * 14 13 11 43 43 H 0.96996 * 120.00600 * 185.06920 * 19 18 16 44 44 H 1.08997 * 117.50350 * 359.97438 * 24 15 14 45 45 H 1.09003 * 117.50389 * 145.02003 * 24 15 14 46 46 H 1.08999 * 117.50359 * 214.98228 * 25 15 14 47 47 H 1.09004 * 117.49879 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 6 4.0645 2.8850 0.2511 8 1 3.6971 3.4715 -0.5910 9 6 5.5944 2.8960 0.2514 10 7 3.5717 3.4656 1.5026 11 6 3.4334 4.8014 1.6173 12 8 3.7173 5.5245 0.6819 13 7 2.9806 5.3356 2.7688 14 6 2.8298 6.7875 2.8933 15 6 2.2631 7.1248 4.2739 16 6 3.1555 6.7922 5.4418 17 1 3.0409 5.8504 5.9580 18 6 4.1183 7.6901 5.8514 19 7 4.3440 8.7785 5.1485 20 14 5.1020 7.3609 7.4049 21 1 6.3230 6.5878 7.0632 22 1 5.4915 8.6518 8.0271 23 1 4.2736 6.5814 8.3595 24 6 0.7535 6.9761 4.4735 25 6 1.3814 8.3697 4.3906 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 0.5489 2.1252 -1.3969 32 1 1.9989 3.1540 -1.3076 33 1 2.0699 1.5874 -2.1492 34 1 3.8570 0.8800 1.0113 35 1 4.0029 0.9835 -0.7596 36 1 5.9618 2.3095 1.0935 37 1 5.9611 2.4639 -0.6797 38 1 5.9505 3.9223 0.3411 39 1 3.3450 2.8887 2.2487 40 1 2.7538 4.7586 3.5149 41 1 3.8020 7.2653 2.7730 42 1 2.1491 7.1495 2.1228 43 1 5.0699 9.3729 5.3945 44 1 0.1640 6.6383 3.6212 45 1 0.4057 6.6380 5.4496 46 1 1.4464 8.9479 5.3123 47 1 1.2053 8.9486 3.4840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430853115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:12 Heat of formation + Delta-G solvation = -40.339458 kcal Electronic energy + Delta-G solvation = -22938.372007 eV Core-core repulsion = 19734.788642 eV Total energy + Delta-G solvation = -3203.583365 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.61552 -37.73019 -36.63301 -34.71078 -33.19784 -31.95691 -31.01799 -29.58294 -26.91390 -26.13056 -25.06513 -23.98285 -21.32476 -20.99698 -20.26528 -19.83608 -19.33745 -17.69781 -16.28804 -15.76361 -15.33924 -15.03825 -14.76208 -14.51356 -14.16913 -14.04141 -13.73025 -13.23389 -13.18399 -12.77358 -12.59766 -12.50868 -12.17614 -12.11263 -11.77621 -11.71738 -11.54629 -11.46060 -11.07346 -10.99032 -10.90959 -10.70334 -10.60018 -10.51551 -10.28351 -10.24868 -9.67197 -9.46089 -8.93877 -8.73993 -8.47438 -8.22336 -7.91316 -6.05733 -4.14204 3.26430 3.31633 3.34380 3.36008 3.88900 4.36471 4.48730 4.72358 4.75740 4.88853 5.10718 5.16495 5.22524 5.27714 5.38763 5.39810 5.46821 5.48886 5.60330 5.70214 5.76188 5.81148 5.83574 5.92586 5.93119 6.03232 6.05608 6.12750 6.29985 6.35162 6.37371 6.39864 6.50462 6.63540 6.71914 6.90131 6.94912 7.11341 7.39180 7.46228 7.51040 7.67557 7.83138 8.36496 8.74846 8.86442 9.29938 9.52295 11.02085 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.003868 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.941403 B = 7236.786456 C = 7634.028598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.093 4.093 4 H 0.074 0.926 5 C -0.151 4.151 6 C -0.122 4.122 7 C 0.160 3.840 8 H 0.088 0.912 9 C -0.165 4.165 10 N -0.747 5.747 11 C 0.698 3.302 12 O -0.605 6.605 13 N -0.722 5.722 14 C 0.183 3.817 15 C 0.029 3.971 16 C -0.499 4.499 17 H 0.059 0.941 18 C 0.074 3.926 19 N -0.874 5.874 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.211 4.211 25 C -0.148 4.148 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.391 0.609 40 H 0.395 0.605 41 H 0.069 0.931 42 H 0.033 0.967 43 H 0.261 0.739 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.910 -16.085 -8.997 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.111 4.111 4 H 0.092 0.908 5 C -0.208 4.208 6 C -0.160 4.160 7 C 0.054 3.946 8 H 0.106 0.894 9 C -0.223 4.223 10 N -0.404 5.404 11 C 0.398 3.602 12 O -0.485 6.485 13 N -0.374 5.374 14 C 0.059 3.941 15 C 0.028 3.972 16 C -0.537 4.537 17 H 0.077 0.923 18 C -0.130 4.130 19 N -0.510 5.510 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.248 4.248 25 C -0.186 4.186 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.224 0.776 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.101 0.899 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.578 -15.157 -9.828 18.415 hybrid contribution 0.476 -0.574 1.597 1.762 sum -3.102 -15.730 -8.231 18.022 Atomic orbital electron populations 1.21826 0.96024 1.01256 1.02075 1.21576 0.95875 0.96485 1.01676 1.21168 0.95093 0.95835 0.99047 0.90757 1.21930 1.01174 1.00997 0.96706 1.21958 0.95580 0.95906 1.02515 1.20762 0.93296 0.93190 0.87326 0.89365 1.22216 0.96014 1.02835 1.01278 1.45202 1.72701 1.05735 1.16753 1.16060 0.78555 0.81785 0.83783 1.90859 1.58174 1.59878 1.39552 1.45146 1.69159 1.09507 1.13578 1.20816 1.00604 0.76983 0.95671 1.19041 0.87201 0.98071 0.92912 1.20320 1.17558 1.02968 1.12840 0.92303 1.24979 0.96864 0.94626 0.96540 1.69975 1.29525 1.12576 1.38914 0.86644 0.80305 0.77638 0.83723 1.20717 1.21178 1.19858 1.23012 0.98992 1.02564 1.00224 1.22486 1.05103 0.90144 1.00875 0.92696 0.93112 0.92525 0.92165 0.92234 0.92716 0.92081 0.92977 0.91528 0.90688 0.92808 0.92278 0.91794 0.77580 0.77212 0.91314 0.94847 0.92872 0.91677 0.90447 0.89857 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 37.16 0.36 -0.85 16 2 C -0.12 -0.94 5.40 -26.73 -0.14 -1.08 16 3 C -0.09 -0.86 2.33 -90.62 -0.21 -1.07 16 4 H 0.07 0.79 7.62 -51.93 -0.40 0.39 16 5 C -0.15 -1.48 8.71 37.16 0.32 -1.16 16 6 C -0.12 -1.10 4.22 -26.73 -0.11 -1.22 16 7 C 0.16 1.98 2.44 -67.93 -0.17 1.81 16 8 H 0.09 1.27 5.78 -51.93 -0.30 0.97 16 9 C -0.16 -2.03 9.48 37.16 0.35 -1.67 16 10 N -0.75 -10.58 4.45 -58.67 -0.26 -10.84 16 11 C 0.70 13.42 8.53 -86.92 -0.74 12.68 16 12 O -0.60 -14.00 16.01 5.28 0.08 -13.91 16 13 N -0.72 -14.27 5.48 -65.23 -0.36 -14.62 16 14 C 0.18 4.24 5.50 -4.04 -0.02 4.22 16 15 C 0.03 0.67 1.38 -155.67 -0.21 0.46 16 16 C -0.50 -12.87 8.63 -34.44 -0.30 -13.17 16 17 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 18 C 0.07 1.97 5.39 -17.82 -0.10 1.88 16 19 N -0.87 -24.42 12.91 55.43 0.72 -23.71 16 20 Si 0.89 20.63 29.55 -169.99 -5.02 15.60 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 C -0.21 -4.40 9.96 -26.70 -0.27 -4.67 16 25 C -0.15 -3.40 9.42 -26.70 -0.25 -3.66 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.45 6.57 -51.93 -0.34 0.10 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.52 6.56 -51.93 -0.34 0.17 16 32 H 0.06 0.72 6.46 -51.93 -0.34 0.38 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.39 4.60 8.62 -40.82 -0.35 4.25 16 40 H 0.39 7.09 8.38 -40.82 -0.34 6.74 16 41 H 0.07 1.84 8.14 -51.93 -0.42 1.42 16 42 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 43 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 46 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 47 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -29.71 377.12 -9.36 -39.07 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -8.71 Total: 10.22 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.49 Total: -7.49 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.10 Total: -49.18 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.08 Total: -13.91 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.71 -9.36 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430853115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.265 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds