Wall clock time and date at job start Tue Mar 31 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47068 * 2 1 4 4 H 1.09004 * 109.47371 * 54.99613 * 3 2 1 5 5 C 1.53002 * 109.47111 * 295.00058 * 3 2 1 6 6 C 1.52999 * 109.47031 * 174.99930 * 3 2 1 7 7 C 1.52998 * 109.46951 * 184.99650 * 6 3 2 8 8 H 1.08998 * 109.47379 * 304.99927 * 7 6 3 9 9 C 1.53000 * 109.47240 * 184.99894 * 7 6 3 10 10 N 1.46507 * 109.47142 * 65.00109 * 7 6 3 11 11 C 1.34775 * 120.00086 * 204.99394 * 10 7 6 12 12 O 1.21594 * 119.99815 * 0.02562 * 11 10 7 13 13 N 1.34774 * 120.00178 * 180.02562 * 11 10 7 14 14 C 1.46499 * 120.00228 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47085 * 178.28701 * 14 13 11 16 16 C 1.50704 * 115.55025 * 65.13933 * 15 14 13 17 17 H 1.08003 * 120.00134 * 265.40571 * 16 15 14 18 18 C 1.37874 * 119.99910 * 85.40230 * 16 15 14 19 19 N 1.31517 * 120.00225 * 353.56029 * 18 16 15 20 20 Si 1.86799 * 120.00101 * 173.55568 * 18 16 15 21 21 H 1.48496 * 109.47449 * 90.00225 * 20 18 16 22 22 H 1.48503 * 109.47293 * 210.00390 * 20 18 16 23 23 H 1.48500 * 109.47122 * 329.99945 * 20 18 16 24 24 C 1.52995 * 117.49937 * 279.47185 * 15 14 13 25 25 C 1.52993 * 117.50032 * 210.80924 * 15 14 13 26 26 H 1.09002 * 109.46986 * 300.00512 * 1 2 3 27 27 H 1.08998 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47269 * 60.00101 * 1 2 3 29 29 H 1.09001 * 109.46642 * 119.99524 * 2 1 3 30 30 H 1.08994 * 109.47055 * 240.00129 * 2 1 3 31 31 H 1.08997 * 109.47177 * 59.99870 * 5 3 2 32 32 H 1.08998 * 109.47203 * 180.02562 * 5 3 2 33 33 H 1.09004 * 109.46639 * 300.00003 * 5 3 2 34 34 H 1.08996 * 109.47056 * 305.00009 * 6 3 2 35 35 H 1.08998 * 109.46913 * 64.99976 * 6 3 2 36 36 H 1.09003 * 109.47386 * 300.00154 * 9 7 6 37 37 H 1.09002 * 109.47101 * 59.99750 * 9 7 6 38 38 H 1.08998 * 109.47816 * 180.02562 * 9 7 6 39 39 H 0.96999 * 119.99872 * 24.99899 * 10 7 6 40 40 H 0.97008 * 119.99627 * 359.97438 * 13 11 10 41 41 H 1.08994 * 109.46906 * 298.28467 * 14 13 11 42 42 H 1.08998 * 109.47310 * 58.28888 * 14 13 11 43 43 H 0.96996 * 120.00600 * 185.06920 * 19 18 16 44 44 H 1.08997 * 117.50350 * 359.97438 * 24 15 14 45 45 H 1.09003 * 117.50389 * 145.02003 * 24 15 14 46 46 H 1.08999 * 117.50359 * 214.98228 * 25 15 14 47 47 H 1.09004 * 117.49879 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 6 4.0645 2.8850 0.2511 8 1 3.6971 3.4715 -0.5910 9 6 5.5944 2.8960 0.2514 10 7 3.5717 3.4656 1.5026 11 6 3.4334 4.8014 1.6173 12 8 3.7173 5.5245 0.6819 13 7 2.9806 5.3356 2.7688 14 6 2.8298 6.7875 2.8933 15 6 2.2631 7.1248 4.2739 16 6 3.1555 6.7922 5.4418 17 1 3.0409 5.8504 5.9580 18 6 4.1183 7.6901 5.8514 19 7 4.3440 8.7785 5.1485 20 14 5.1020 7.3609 7.4049 21 1 6.3230 6.5878 7.0632 22 1 5.4915 8.6518 8.0271 23 1 4.2736 6.5814 8.3595 24 6 0.7535 6.9761 4.4735 25 6 1.3814 8.3697 4.3906 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 0.5489 2.1252 -1.3969 32 1 1.9989 3.1540 -1.3076 33 1 2.0699 1.5874 -2.1492 34 1 3.8570 0.8800 1.0113 35 1 4.0029 0.9835 -0.7596 36 1 5.9618 2.3095 1.0935 37 1 5.9611 2.4639 -0.6797 38 1 5.9505 3.9223 0.3411 39 1 3.3450 2.8887 2.2487 40 1 2.7538 4.7586 3.5149 41 1 3.8020 7.2653 2.7730 42 1 2.1491 7.1495 2.1228 43 1 5.0699 9.3729 5.3945 44 1 0.1640 6.6383 3.6212 45 1 0.4057 6.6380 5.4496 46 1 1.4464 8.9479 5.3123 47 1 1.2053 8.9486 3.4840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430853115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:11 Heat of formation + Delta-G solvation = -57.575436 kcal Electronic energy + Delta-G solvation = -22939.119415 eV Core-core repulsion = 19734.788642 eV Total energy + Delta-G solvation = -3204.330773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.05628 -38.93261 -38.20627 -35.77772 -34.90839 -33.95741 -32.11953 -30.42857 -27.98188 -27.72384 -26.93451 -24.78672 -22.99509 -22.23564 -21.56470 -21.20269 -20.64139 -19.25792 -18.03415 -17.18426 -16.66216 -16.33562 -16.09289 -15.88023 -15.59113 -15.43889 -15.01908 -14.55824 -14.34764 -14.11480 -13.87223 -13.53587 -13.38385 -13.31461 -13.01498 -12.90430 -12.86709 -12.83164 -12.63358 -12.33628 -12.18257 -12.03475 -11.91190 -11.49454 -11.44137 -11.31689 -11.18218 -11.10498 -10.83566 -10.45017 -10.20440 -10.01650 -9.53186 -8.08189 -6.21322 1.42565 1.45172 1.53582 1.91782 2.32896 2.43484 3.19971 3.37554 3.64420 3.72290 3.98949 4.03584 4.26381 4.34190 4.35858 4.47203 4.54927 4.57833 4.67136 4.70731 4.74330 4.76091 4.81963 4.90121 4.94972 4.99119 5.00526 5.03775 5.13513 5.19516 5.25788 5.28300 5.28459 5.31768 5.40671 5.56361 5.60494 5.61668 5.62541 5.72586 5.78173 5.81533 6.23538 6.38438 6.85500 7.31607 7.47939 7.77069 8.99413 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.003868 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.941403 B = 7236.786456 C = 7634.028598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.091 4.091 4 H 0.059 0.941 5 C -0.150 4.150 6 C -0.110 4.110 7 C 0.156 3.844 8 H 0.065 0.935 9 C -0.161 4.161 10 N -0.726 5.726 11 C 0.696 3.304 12 O -0.648 6.648 13 N -0.717 5.717 14 C 0.201 3.799 15 C 0.006 3.994 16 C -0.503 4.503 17 H 0.064 0.936 18 C 0.024 3.976 19 N -0.909 5.909 20 Si 0.950 3.050 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.263 1.263 24 C -0.175 4.175 25 C -0.160 4.160 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.024 0.976 39 H 0.407 0.593 40 H 0.405 0.595 41 H 0.023 0.977 42 H 0.029 0.971 43 H 0.258 0.742 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.064 0.936 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.396 -19.141 -8.568 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.110 4.110 4 H 0.078 0.922 5 C -0.207 4.207 6 C -0.148 4.148 7 C 0.051 3.949 8 H 0.084 0.916 9 C -0.219 4.219 10 N -0.383 5.383 11 C 0.395 3.605 12 O -0.531 6.531 13 N -0.370 5.370 14 C 0.076 3.924 15 C 0.006 3.994 16 C -0.540 4.540 17 H 0.082 0.918 18 C -0.177 4.177 19 N -0.546 5.546 20 Si 0.776 3.224 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.187 1.187 24 C -0.212 4.212 25 C -0.198 4.198 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.044 0.956 39 H 0.242 0.758 40 H 0.241 0.759 41 H 0.041 0.959 42 H 0.048 0.952 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.079 -18.287 -9.377 20.951 hybrid contribution 0.604 0.348 1.398 1.563 sum -3.475 -17.938 -7.978 19.938 Atomic orbital electron populations 1.21837 0.96183 1.01742 1.01575 1.21532 0.95706 0.95259 1.02574 1.21144 0.95173 0.96708 0.97965 0.92250 1.21912 1.01270 0.99696 0.97788 1.21904 0.95343 0.93274 1.04254 1.20953 0.93502 0.94941 0.85489 0.91640 1.22179 0.95700 1.00802 1.03248 1.45079 1.71263 1.03906 1.18039 1.16238 0.78169 0.83146 0.82906 1.90831 1.59877 1.61434 1.40927 1.44916 1.69533 1.08305 1.14296 1.20350 0.97902 0.78669 0.95488 1.19055 0.88777 0.99217 0.92386 1.20642 1.17450 1.02867 1.13069 0.91786 1.25713 0.98190 0.94617 0.99144 1.70110 1.30240 1.13660 1.40600 0.85678 0.78942 0.77220 0.80517 1.20682 1.21617 1.18669 1.22992 0.96758 0.99912 1.01550 1.22430 1.06248 0.90882 1.00226 0.93430 0.92139 0.92848 0.91307 0.91239 0.92643 0.94696 0.91636 0.89770 0.88737 0.91447 0.89800 0.95647 0.75753 0.75948 0.95856 0.95250 0.93283 0.89462 0.89470 0.91731 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.67 71.98 0.70 -1.41 16 2 C -0.11 -1.45 5.40 30.59 0.17 -1.28 16 3 C -0.09 -1.49 2.33 -10.79 -0.03 -1.51 16 4 H 0.06 1.15 7.62 -2.38 -0.02 1.14 16 5 C -0.15 -2.76 8.71 71.98 0.63 -2.13 16 6 C -0.11 -1.68 4.22 30.59 0.13 -1.55 16 7 C 0.16 3.69 2.44 44.99 0.11 3.80 16 8 H 0.07 1.90 5.78 -2.39 -0.01 1.89 16 9 C -0.16 -3.76 9.48 71.98 0.68 -3.08 16 10 N -0.73 -19.93 4.45 -457.80 -2.04 -21.97 16 11 C 0.70 27.00 8.53 179.06 1.53 28.53 16 12 O -0.65 -31.04 16.01 -4.01 -0.06 -31.10 16 13 N -0.72 -28.38 5.48 -478.55 -2.62 -31.00 16 14 C 0.20 9.53 5.50 86.38 0.48 10.01 16 15 C 0.01 0.30 1.38 -52.93 -0.07 0.23 16 16 C -0.50 -25.73 8.63 25.60 0.22 -25.51 16 17 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 18 C 0.02 1.28 5.39 84.65 0.46 1.73 16 19 N -0.91 -52.01 12.91 21.45 0.28 -51.73 16 20 Si 0.95 42.37 29.55 68.60 2.03 44.39 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 24 C -0.18 -7.00 9.96 30.62 0.30 -6.69 16 25 C -0.16 -7.36 9.42 30.62 0.29 -7.07 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.75 6.57 -2.38 -0.02 0.73 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.99 6.56 -2.39 -0.02 0.98 16 32 H 0.03 0.82 6.46 -2.39 -0.02 0.81 16 33 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.41 8.75 8.62 -92.71 -0.80 7.95 16 40 H 0.41 14.12 8.38 -92.70 -0.78 13.35 16 41 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.03 1.39 8.09 -2.39 -0.02 1.37 16 43 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 44 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 45 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 46 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.07 3.08 8.14 -2.38 -0.02 3.06 16 Total: -1.00 -65.84 377.12 2.53 -63.32 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: -0.64 Total: 34.02 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 5.58 Total: -5.94 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -4.38 Total: -104.69 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.06 Total: -31.10 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -65.84 2.53 -63.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430853115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.743 kcal (2) G-P(sol) polarization free energy of solvation -65.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds