Wall clock time and date at job start Tue Mar 31 2020 05:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47378 * 2 1 4 4 H 1.09011 * 109.47203 * 305.00720 * 3 2 1 5 5 C 1.52998 * 109.47071 * 65.00221 * 3 2 1 6 6 C 1.52997 * 109.47545 * 185.00328 * 3 2 1 7 7 C 1.52996 * 109.47485 * 174.99686 * 6 3 2 8 8 H 1.09004 * 109.46828 * 55.00407 * 7 6 3 9 9 C 1.52995 * 109.47194 * 174.99772 * 7 6 3 10 10 N 1.46494 * 109.47741 * 295.00411 * 7 6 3 11 11 C 1.34778 * 120.00434 * 154.99243 * 10 7 6 12 12 O 1.21588 * 119.99613 * 0.02562 * 11 10 7 13 13 N 1.34779 * 120.00077 * 179.97438 * 11 10 7 14 14 C 1.46493 * 119.99888 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47036 * 184.79176 * 14 13 11 16 16 C 1.50692 * 115.55016 * 294.81752 * 15 14 13 17 17 H 1.08002 * 120.00113 * 99.48121 * 16 15 14 18 18 C 1.37879 * 119.99926 * 279.20564 * 16 15 14 19 19 N 1.31509 * 120.00406 * 355.32457 * 18 16 15 20 20 Si 1.86810 * 119.99823 * 175.32663 * 18 16 15 21 21 H 1.48500 * 109.46903 * 89.99877 * 20 18 16 22 22 H 1.48493 * 109.46965 * 209.99884 * 20 18 16 23 23 H 1.48497 * 109.46890 * 330.00046 * 20 18 16 24 24 C 1.52997 * 117.51909 * 80.52228 * 15 14 13 25 25 C 1.52994 * 60.00384 * 107.47928 * 24 15 14 26 26 H 1.09000 * 109.46842 * 299.99779 * 1 2 3 27 27 H 1.08994 * 109.47454 * 59.99238 * 1 2 3 28 28 H 1.08999 * 109.47309 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46287 * 240.00655 * 2 1 3 30 30 H 1.08994 * 109.47454 * 120.00762 * 2 1 3 31 31 H 1.09006 * 109.47252 * 180.02562 * 5 3 2 32 32 H 1.09005 * 109.47238 * 300.00103 * 5 3 2 33 33 H 1.08995 * 109.47082 * 60.00077 * 5 3 2 34 34 H 1.09008 * 109.46585 * 55.00160 * 6 3 2 35 35 H 1.08996 * 109.47202 * 295.00190 * 6 3 2 36 36 H 1.09000 * 109.47883 * 300.00793 * 9 7 6 37 37 H 1.09004 * 109.47240 * 60.00574 * 9 7 6 38 38 H 1.09002 * 109.47127 * 180.02562 * 9 7 6 39 39 H 0.97000 * 119.99859 * 334.99931 * 10 7 6 40 40 H 0.97003 * 119.99757 * 359.97438 * 13 11 10 41 41 H 1.08999 * 109.47688 * 64.79293 * 14 13 11 42 42 H 1.09004 * 109.47203 * 304.79117 * 14 13 11 43 43 H 0.96998 * 120.00343 * 185.00416 * 19 18 16 44 44 H 1.08997 * 117.49957 * 214.97404 * 24 15 14 45 45 H 1.09008 * 117.49760 * 359.97438 * 24 15 14 46 46 H 1.09005 * 117.49918 * 252.51013 * 25 24 15 47 47 H 1.08997 * 117.52061 * 107.47923 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6354 2.1264 1.3074 6 6 3.5649 1.4443 -0.1258 7 6 4.0646 2.8849 -0.2513 8 1 3.6973 3.4715 0.5909 9 6 5.5945 2.8958 -0.2516 10 7 3.5718 3.4656 -1.5027 11 6 3.4334 4.8013 -1.6173 12 8 3.7180 5.5244 -0.6822 13 7 2.9805 5.3356 -2.7688 14 6 2.8306 6.7875 -2.8936 15 6 2.1924 7.1201 -4.2438 16 6 3.0196 6.7771 -5.4558 17 1 2.8202 5.8697 -6.0065 18 6 4.0274 7.6245 -5.8650 19 7 4.2073 8.7753 -5.2544 20 14 5.1372 7.1378 -7.2867 21 1 4.5501 7.6232 -8.5614 22 1 6.4792 7.7446 -7.0971 23 1 5.2644 5.6590 -7.3316 24 6 0.6736 6.9784 -4.3619 25 6 1.3112 8.3685 -4.3202 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 1.9984 3.1543 1.3072 32 1 0.5490 2.1252 1.3970 33 1 2.0700 1.5874 2.1491 34 1 3.8570 0.8800 -1.0115 35 1 4.0030 0.9835 0.7595 36 1 5.9612 2.4638 0.6795 37 1 5.9618 2.3093 -1.0937 38 1 5.9504 3.9222 -0.3405 39 1 3.3449 2.8887 -2.2488 40 1 2.7545 4.7587 -3.5152 41 1 3.8102 7.2609 -2.8283 42 1 2.1940 7.1574 -2.0899 43 1 4.8678 9.4029 -5.5873 44 1 0.2727 6.6369 -5.3163 45 1 0.1287 6.6476 -3.4777 46 1 1.1857 8.9527 -3.4085 47 1 1.3301 8.9419 -5.2470 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430853116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:15 Heat of formation + Delta-G solvation = -40.651042 kcal Electronic energy + Delta-G solvation = -22959.305349 eV Core-core repulsion = 19755.708473 eV Total energy + Delta-G solvation = -3203.596877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.62476 -37.73438 -36.62907 -34.71584 -33.20110 -31.96774 -31.02310 -29.58689 -26.91672 -26.14958 -25.05906 -23.98415 -21.31664 -20.98618 -20.26840 -19.83889 -19.34126 -17.70227 -16.30327 -15.76736 -15.33941 -15.04241 -14.77190 -14.51560 -14.16490 -14.04194 -13.72790 -13.23832 -13.19635 -12.76896 -12.59739 -12.51004 -12.17954 -12.11501 -11.78553 -11.72841 -11.55101 -11.46281 -11.07700 -10.99128 -10.91426 -10.70435 -10.60140 -10.52173 -10.28677 -10.22874 -9.65730 -9.41114 -9.00788 -8.75258 -8.48391 -8.20518 -7.92051 -6.05709 -4.14850 3.26196 3.31004 3.34503 3.35601 3.87772 4.36157 4.48502 4.72278 4.75571 4.88522 5.10529 5.16247 5.23350 5.27530 5.38650 5.40530 5.46533 5.48679 5.60029 5.69963 5.75872 5.80573 5.83482 5.92515 5.93052 6.03018 6.05436 6.12381 6.29932 6.34784 6.37012 6.39036 6.51822 6.63409 6.72412 6.90722 6.94381 7.12978 7.39196 7.45993 7.48611 7.67790 7.83388 8.36454 8.74177 8.86371 9.29003 9.51919 11.01843 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.003946 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.962431 B = 7094.420474 C = 7513.618868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.093 4.093 4 H 0.074 0.926 5 C -0.151 4.151 6 C -0.122 4.122 7 C 0.160 3.840 8 H 0.088 0.912 9 C -0.165 4.165 10 N -0.747 5.747 11 C 0.698 3.302 12 O -0.605 6.605 13 N -0.722 5.722 14 C 0.183 3.817 15 C 0.027 3.973 16 C -0.499 4.499 17 H 0.059 0.941 18 C 0.074 3.926 19 N -0.874 5.874 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.210 4.210 25 C -0.147 4.147 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.391 0.609 40 H 0.396 0.604 41 H 0.066 0.934 42 H 0.036 0.964 43 H 0.261 0.739 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 -16.054 9.159 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.111 4.111 4 H 0.093 0.907 5 C -0.208 4.208 6 C -0.160 4.160 7 C 0.054 3.946 8 H 0.106 0.894 9 C -0.223 4.223 10 N -0.404 5.404 11 C 0.398 3.602 12 O -0.485 6.485 13 N -0.374 5.374 14 C 0.059 3.941 15 C 0.027 3.973 16 C -0.537 4.537 17 H 0.077 0.923 18 C -0.130 4.130 19 N -0.510 5.510 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.247 4.247 25 C -0.185 4.185 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.224 0.776 40 H 0.229 0.771 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.175 -15.195 10.067 18.502 hybrid contribution 0.479 -0.614 -1.587 1.768 sum -2.696 -15.809 8.480 18.142 Atomic orbital electron populations 1.21824 0.96017 1.01258 1.02081 1.21576 0.95881 0.96480 1.01674 1.21167 0.95084 0.95842 0.99051 0.90749 1.21930 1.01185 1.00985 0.96704 1.21958 0.95590 0.95894 1.02515 1.20759 0.93289 0.93207 0.87326 0.89362 1.22215 0.96022 1.02813 1.01289 1.45201 1.72680 1.05736 1.16767 1.16064 0.78570 0.81796 0.83773 1.90857 1.58178 1.59887 1.39585 1.45158 1.69162 1.09518 1.13590 1.20799 1.00541 0.77000 0.95725 1.19047 0.86909 0.98177 0.93208 1.20339 1.15202 1.07603 1.10520 0.92292 1.24979 0.96752 0.95010 0.96294 1.69979 1.34263 1.07544 1.39197 0.86636 0.80343 0.78811 0.82462 1.20733 1.21208 1.19862 1.22970 0.98837 1.02811 1.00098 1.22489 1.05137 0.90126 1.00784 0.92531 0.92683 0.93111 0.92166 0.92237 0.92087 0.92716 0.92973 0.91528 0.90686 0.92274 0.92803 0.91813 0.77558 0.77107 0.91604 0.94582 0.92890 0.90498 0.91697 0.91772 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 37.16 0.36 -0.86 16 2 C -0.12 -0.94 5.40 -26.73 -0.14 -1.08 16 3 C -0.09 -0.86 2.33 -90.62 -0.21 -1.07 16 4 H 0.07 0.79 7.62 -51.92 -0.40 0.39 16 5 C -0.15 -1.48 8.71 37.16 0.32 -1.16 16 6 C -0.12 -1.10 4.22 -26.73 -0.11 -1.22 16 7 C 0.16 1.97 2.44 -67.94 -0.17 1.81 16 8 H 0.09 1.27 5.78 -51.93 -0.30 0.97 16 9 C -0.16 -2.02 9.48 37.15 0.35 -1.67 16 10 N -0.75 -10.58 4.45 -58.68 -0.26 -10.84 16 11 C 0.70 13.39 8.53 -86.92 -0.74 12.65 16 12 O -0.61 -13.96 16.00 5.29 0.08 -13.87 16 13 N -0.72 -14.28 5.48 -65.23 -0.36 -14.64 16 14 C 0.18 4.25 5.50 -4.04 -0.02 4.22 16 15 C 0.03 0.65 1.40 -155.66 -0.22 0.43 16 16 C -0.50 -12.84 8.57 -34.44 -0.30 -13.14 16 17 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 18 C 0.07 1.96 5.44 -17.82 -0.10 1.86 16 19 N -0.87 -24.38 12.85 55.43 0.71 -23.67 16 20 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 C -0.21 -4.40 9.95 -26.74 -0.27 -4.67 16 25 C -0.15 -3.39 9.39 -26.73 -0.25 -3.64 16 26 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.72 6.46 -51.93 -0.34 0.38 16 32 H 0.05 0.52 6.57 -51.93 -0.34 0.18 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.39 4.61 8.62 -40.82 -0.35 4.26 16 40 H 0.40 7.14 8.34 -40.82 -0.34 6.80 16 41 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 43 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 44 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 45 H 0.06 1.26 8.14 -51.92 -0.42 0.83 16 46 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -29.62 377.01 -9.37 -38.99 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -8.71 Total: 10.27 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.49 Total: -7.52 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.09 Total: -49.15 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.08 Total: -13.87 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.62 -9.37 -38.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430853116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.665 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds