Wall clock time and date at job start Tue Mar 31 2020 05:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47378 * 2 1 4 4 H 1.09011 * 109.47203 * 305.00720 * 3 2 1 5 5 C 1.52998 * 109.47071 * 65.00221 * 3 2 1 6 6 C 1.52997 * 109.47545 * 185.00328 * 3 2 1 7 7 C 1.52996 * 109.47485 * 174.99686 * 6 3 2 8 8 H 1.09004 * 109.46828 * 55.00407 * 7 6 3 9 9 C 1.52995 * 109.47194 * 174.99772 * 7 6 3 10 10 N 1.46494 * 109.47741 * 295.00411 * 7 6 3 11 11 C 1.34778 * 120.00434 * 154.99243 * 10 7 6 12 12 O 1.21588 * 119.99613 * 0.02562 * 11 10 7 13 13 N 1.34779 * 120.00077 * 179.97438 * 11 10 7 14 14 C 1.46493 * 119.99888 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47036 * 184.79176 * 14 13 11 16 16 C 1.50692 * 115.55016 * 294.81752 * 15 14 13 17 17 H 1.08002 * 120.00113 * 99.48121 * 16 15 14 18 18 C 1.37879 * 119.99926 * 279.20564 * 16 15 14 19 19 N 1.31509 * 120.00406 * 355.32457 * 18 16 15 20 20 Si 1.86810 * 119.99823 * 175.32663 * 18 16 15 21 21 H 1.48500 * 109.46903 * 89.99877 * 20 18 16 22 22 H 1.48493 * 109.46965 * 209.99884 * 20 18 16 23 23 H 1.48497 * 109.46890 * 330.00046 * 20 18 16 24 24 C 1.52997 * 117.51909 * 80.52228 * 15 14 13 25 25 C 1.52994 * 60.00384 * 107.47928 * 24 15 14 26 26 H 1.09000 * 109.46842 * 299.99779 * 1 2 3 27 27 H 1.08994 * 109.47454 * 59.99238 * 1 2 3 28 28 H 1.08999 * 109.47309 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46287 * 240.00655 * 2 1 3 30 30 H 1.08994 * 109.47454 * 120.00762 * 2 1 3 31 31 H 1.09006 * 109.47252 * 180.02562 * 5 3 2 32 32 H 1.09005 * 109.47238 * 300.00103 * 5 3 2 33 33 H 1.08995 * 109.47082 * 60.00077 * 5 3 2 34 34 H 1.09008 * 109.46585 * 55.00160 * 6 3 2 35 35 H 1.08996 * 109.47202 * 295.00190 * 6 3 2 36 36 H 1.09000 * 109.47883 * 300.00793 * 9 7 6 37 37 H 1.09004 * 109.47240 * 60.00574 * 9 7 6 38 38 H 1.09002 * 109.47127 * 180.02562 * 9 7 6 39 39 H 0.97000 * 119.99859 * 334.99931 * 10 7 6 40 40 H 0.97003 * 119.99757 * 359.97438 * 13 11 10 41 41 H 1.08999 * 109.47688 * 64.79293 * 14 13 11 42 42 H 1.09004 * 109.47203 * 304.79117 * 14 13 11 43 43 H 0.96998 * 120.00343 * 185.00416 * 19 18 16 44 44 H 1.08997 * 117.49957 * 214.97404 * 24 15 14 45 45 H 1.09008 * 117.49760 * 359.97438 * 24 15 14 46 46 H 1.09005 * 117.49918 * 252.51013 * 25 24 15 47 47 H 1.08997 * 117.52061 * 107.47923 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6354 2.1264 1.3074 6 6 3.5649 1.4443 -0.1258 7 6 4.0646 2.8849 -0.2513 8 1 3.6973 3.4715 0.5909 9 6 5.5945 2.8958 -0.2516 10 7 3.5718 3.4656 -1.5027 11 6 3.4334 4.8013 -1.6173 12 8 3.7180 5.5244 -0.6822 13 7 2.9805 5.3356 -2.7688 14 6 2.8306 6.7875 -2.8936 15 6 2.1924 7.1201 -4.2438 16 6 3.0196 6.7771 -5.4558 17 1 2.8202 5.8697 -6.0065 18 6 4.0274 7.6245 -5.8650 19 7 4.2073 8.7753 -5.2544 20 14 5.1372 7.1378 -7.2867 21 1 4.5501 7.6232 -8.5614 22 1 6.4792 7.7446 -7.0971 23 1 5.2644 5.6590 -7.3316 24 6 0.6736 6.9784 -4.3619 25 6 1.3112 8.3685 -4.3202 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 1.9984 3.1543 1.3072 32 1 0.5490 2.1252 1.3970 33 1 2.0700 1.5874 2.1491 34 1 3.8570 0.8800 -1.0115 35 1 4.0030 0.9835 0.7595 36 1 5.9612 2.4638 0.6795 37 1 5.9618 2.3093 -1.0937 38 1 5.9504 3.9222 -0.3405 39 1 3.3449 2.8887 -2.2488 40 1 2.7545 4.7587 -3.5152 41 1 3.8102 7.2609 -2.8283 42 1 2.1940 7.1574 -2.0899 43 1 4.8678 9.4029 -5.5873 44 1 0.2727 6.6369 -5.3163 45 1 0.1287 6.6476 -3.4777 46 1 1.1857 8.9527 -3.4085 47 1 1.3301 8.9419 -5.2470 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430853116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:15 Heat of formation + Delta-G solvation = -57.760857 kcal Electronic energy + Delta-G solvation = -22960.047287 eV Core-core repulsion = 19755.708473 eV Total energy + Delta-G solvation = -3204.338814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.06320 -38.93444 -38.20518 -35.78096 -34.90812 -33.96811 -32.12321 -30.43062 -28.00122 -27.72516 -26.92515 -24.78810 -22.98010 -22.23431 -21.56778 -21.20704 -20.64280 -19.26133 -18.04697 -17.18314 -16.67059 -16.34009 -16.08839 -15.87938 -15.58977 -15.43582 -15.03275 -14.55761 -14.34120 -14.11947 -13.87752 -13.54665 -13.38550 -13.31762 -13.01637 -12.92557 -12.86901 -12.80192 -12.63344 -12.35846 -12.18479 -12.02213 -11.91300 -11.44375 -11.43578 -11.31099 -11.16681 -11.10384 -10.92893 -10.44370 -10.20611 -10.01050 -9.53842 -8.07999 -6.21711 1.42552 1.45396 1.53252 1.91361 2.32107 2.43310 3.20240 3.38201 3.64461 3.72156 3.98793 4.03453 4.25812 4.34035 4.35689 4.47029 4.54819 4.56913 4.67847 4.70649 4.74252 4.76176 4.81822 4.90001 4.94960 4.99022 5.00514 5.04052 5.13398 5.19404 5.25741 5.28132 5.28960 5.31607 5.40478 5.56191 5.56844 5.61446 5.63172 5.72790 5.78921 5.81300 6.23279 6.38494 6.85495 7.31135 7.47824 7.76382 8.99445 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.003946 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.962431 B = 7094.420474 C = 7513.618868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.091 4.091 4 H 0.059 0.941 5 C -0.149 4.149 6 C -0.110 4.110 7 C 0.156 3.844 8 H 0.066 0.934 9 C -0.161 4.161 10 N -0.726 5.726 11 C 0.696 3.304 12 O -0.647 6.647 13 N -0.718 5.718 14 C 0.201 3.799 15 C 0.006 3.994 16 C -0.502 4.502 17 H 0.064 0.936 18 C 0.024 3.976 19 N -0.908 5.908 20 Si 0.950 3.050 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.263 1.263 24 C -0.175 4.175 25 C -0.158 4.158 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.407 0.593 40 H 0.406 0.594 41 H 0.021 0.979 42 H 0.031 0.969 43 H 0.258 0.742 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.997 -19.171 8.844 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.110 4.110 4 H 0.077 0.923 5 C -0.207 4.207 6 C -0.148 4.148 7 C 0.051 3.949 8 H 0.084 0.916 9 C -0.219 4.219 10 N -0.383 5.383 11 C 0.396 3.604 12 O -0.530 6.530 13 N -0.371 5.371 14 C 0.076 3.924 15 C 0.005 3.995 16 C -0.540 4.540 17 H 0.082 0.918 18 C -0.177 4.177 19 N -0.546 5.546 20 Si 0.776 3.224 21 H -0.202 1.202 22 H -0.220 1.220 23 H -0.187 1.187 24 C -0.212 4.212 25 C -0.197 4.197 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.242 0.758 40 H 0.241 0.759 41 H 0.040 0.960 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.585 -18.387 9.730 21.110 hybrid contribution 0.574 0.333 -1.427 1.573 sum -3.011 -18.054 8.304 20.099 Atomic orbital electron populations 1.21835 0.96189 1.01741 1.01573 1.21532 0.95702 0.95265 1.02574 1.21143 0.95183 0.96704 0.97963 0.92263 1.21912 1.01271 0.99692 0.97787 1.21906 0.95334 0.93289 1.04253 1.20952 0.93522 0.94938 0.85484 0.91629 1.22178 0.95673 1.00817 1.03254 1.45082 1.71245 1.03915 1.18051 1.16235 0.78178 0.83151 0.82885 1.90829 1.59857 1.61427 1.40932 1.44929 1.69554 1.08305 1.14312 1.20334 0.97874 0.78702 0.95476 1.19062 0.88520 0.99237 0.92677 1.20652 1.15110 1.07414 1.10792 0.91762 1.25708 0.98171 0.95037 0.98743 1.70110 1.35081 1.08616 1.40770 0.85685 0.78102 0.78874 0.79766 1.20228 1.21996 1.18714 1.22952 0.96624 1.00170 1.01468 1.22422 1.06329 0.90853 1.00080 0.92852 0.93434 0.92139 0.91315 0.91230 0.94690 0.92660 0.91623 0.89779 0.88728 0.89806 0.91439 0.95611 0.75752 0.75898 0.96009 0.95087 0.93282 0.89513 0.89565 0.91374 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.67 71.98 0.70 -1.42 16 2 C -0.11 -1.45 5.40 30.59 0.17 -1.29 16 3 C -0.09 -1.49 2.33 -10.80 -0.03 -1.52 16 4 H 0.06 1.15 7.62 -2.38 -0.02 1.14 16 5 C -0.15 -2.76 8.71 71.98 0.63 -2.13 16 6 C -0.11 -1.67 4.22 30.59 0.13 -1.54 16 7 C 0.16 3.67 2.44 44.99 0.11 3.77 16 8 H 0.07 1.89 5.78 -2.39 -0.01 1.88 16 9 C -0.16 -3.73 9.48 71.98 0.68 -3.04 16 10 N -0.73 -19.87 4.45 -457.83 -2.04 -21.90 16 11 C 0.70 26.89 8.53 179.05 1.53 28.42 16 12 O -0.65 -30.84 16.00 -3.99 -0.06 -30.91 16 13 N -0.72 -28.38 5.48 -478.54 -2.62 -31.00 16 14 C 0.20 9.54 5.50 86.38 0.48 10.01 16 15 C 0.01 0.28 1.40 -52.93 -0.07 0.20 16 16 C -0.50 -25.64 8.57 25.60 0.22 -25.42 16 17 H 0.06 3.15 7.82 -2.91 -0.02 3.13 16 18 C 0.02 1.28 5.44 84.66 0.46 1.74 16 19 N -0.91 -51.86 12.85 21.45 0.28 -51.59 16 20 Si 0.95 42.31 29.54 68.60 2.03 44.33 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 24 C -0.18 -7.04 9.95 30.59 0.30 -6.74 16 25 C -0.16 -7.34 9.39 30.59 0.29 -7.05 16 26 H 0.05 0.75 6.56 -2.39 -0.02 0.73 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.03 0.82 6.46 -2.38 -0.02 0.81 16 32 H 0.05 0.99 6.57 -2.38 -0.02 0.98 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.41 8.75 8.62 -92.71 -0.80 7.95 16 40 H 0.41 14.21 8.34 -92.71 -0.77 13.44 16 41 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.03 1.47 8.09 -2.39 -0.02 1.45 16 43 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 44 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 45 H 0.09 3.12 8.14 -2.38 -0.02 3.10 16 46 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 47 H 0.06 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -65.50 377.01 2.53 -62.97 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.64 Total: 34.10 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.59 Total: -6.00 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -4.39 Total: -104.49 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.06 Total: -30.91 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -65.50 2.53 -62.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430853116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.211 kcal (2) G-P(sol) polarization free energy of solvation -65.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds