Wall clock time and date at job start Tue Mar 31 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47202 * 2 1 4 4 N 1.46497 * 109.47383 * 184.85352 * 3 2 1 5 5 C 1.46506 * 119.99957 * 263.45385 * 4 3 2 6 6 C 1.52996 * 109.47200 * 269.99896 * 5 4 3 7 7 C 1.52997 * 109.47184 * 174.99918 * 6 5 4 8 8 C 1.53005 * 109.47191 * 295.00072 * 6 5 4 9 9 C 1.34781 * 120.00168 * 83.45246 * 4 3 2 10 10 O 1.21588 * 119.99931 * 185.09564 * 9 4 3 11 11 N 1.34774 * 119.99889 * 5.09534 * 9 4 3 12 12 C 1.46501 * 119.99789 * 175.08746 * 11 9 4 13 13 C 1.52996 * 109.46964 * 184.40005 * 12 11 9 14 14 C 1.50706 * 115.55178 * 298.75356 * 13 12 11 15 15 H 1.07993 * 119.99989 * 115.07190 * 14 13 12 16 16 C 1.37882 * 119.99759 * 295.06799 * 14 13 12 17 17 N 1.31508 * 119.99906 * 191.63749 * 16 14 13 18 18 Si 1.86807 * 119.99803 * 11.64536 * 16 14 13 19 19 H 1.48492 * 109.47261 * 95.50066 * 18 16 14 20 20 H 1.48499 * 109.46548 * 215.50136 * 18 16 14 21 21 H 1.48495 * 109.46808 * 335.49588 * 18 16 14 22 22 C 1.52997 * 117.49917 * 153.08110 * 13 12 11 23 23 C 1.52995 * 117.49960 * 84.42297 * 13 12 11 24 24 H 1.09004 * 109.47165 * 64.92428 * 1 2 3 25 25 H 1.09005 * 109.46917 * 184.92341 * 1 2 3 26 26 H 1.09004 * 109.47288 * 304.92551 * 1 2 3 27 27 H 1.08995 * 109.47091 * 239.99682 * 2 1 3 28 28 H 1.09005 * 109.47185 * 119.99635 * 2 1 3 29 29 H 1.09003 * 109.47733 * 64.85286 * 3 2 1 30 30 H 1.09004 * 109.47489 * 304.85066 * 3 2 1 31 31 H 1.08995 * 109.47122 * 29.99779 * 5 4 3 32 32 H 1.09004 * 109.46923 * 149.99490 * 5 4 3 33 33 H 1.09003 * 109.47414 * 54.99710 * 6 5 4 34 34 H 1.09010 * 109.47073 * 60.00007 * 7 6 5 35 35 H 1.09004 * 109.46956 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47372 * 299.99843 * 7 6 5 37 37 H 1.09003 * 109.46647 * 300.00109 * 8 6 5 38 38 H 1.09001 * 109.47324 * 59.99815 * 8 6 5 39 39 H 1.08999 * 109.46946 * 180.02562 * 8 6 5 40 40 H 0.96998 * 120.00254 * 354.81780 * 11 9 4 41 41 H 1.08993 * 109.47585 * 304.40377 * 12 11 9 42 42 H 1.09007 * 109.46837 * 64.40361 * 12 11 9 43 43 H 0.97008 * 119.99903 * 180.02562 * 17 16 14 44 44 H 1.09003 * 117.49934 * 0.02562 * 22 13 12 45 45 H 1.09003 * 117.49781 * 145.02132 * 22 13 12 46 46 H 1.09011 * 117.50198 * 214.98213 * 23 13 12 47 47 H 1.09002 * 117.49678 * 359.97255 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5003 1.4441 -0.1169 5 6 4.3312 1.5540 1.0848 6 6 4.6089 3.0294 1.3796 7 6 5.3701 3.1508 2.7012 8 6 5.4506 3.6257 0.2496 9 6 4.0794 1.3446 -1.3298 10 8 5.2884 1.2526 -1.4205 11 7 3.3184 1.3469 -2.4421 12 6 3.9519 1.3474 -3.7631 13 6 2.8758 1.4608 -4.8447 14 6 1.8717 0.3377 -4.8830 15 1 0.8327 0.5345 -4.6639 16 6 2.2796 -0.9412 -5.1980 17 7 1.3865 -1.8713 -5.4563 18 14 4.1008 -1.3526 -5.2575 19 1 4.5204 -1.9314 -3.9560 20 1 4.3506 -2.3373 -6.3407 21 1 4.8791 -0.1162 -5.5234 22 6 3.2783 2.0944 -6.1779 23 6 2.3812 2.8632 -5.2047 24 1 -0.3634 0.4356 -0.9308 25 1 -0.3633 -1.0239 0.0882 26 1 -0.3634 0.5884 0.8426 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7494 1.9307 0.9302 30 1 1.6074 1.9808 -0.8434 31 1 3.8084 1.1067 1.9301 32 1 5.2743 1.0319 0.9233 33 1 3.6648 3.5692 1.4532 34 1 6.3143 2.6110 2.6277 35 1 5.5683 4.2020 2.9111 36 1 4.7705 2.7261 3.5063 37 1 6.3947 3.0858 0.1761 38 1 4.9083 3.5392 -0.6920 39 1 5.6488 4.6767 0.4599 40 1 2.3512 1.3444 -2.3681 41 1 4.6339 2.1942 -3.8387 42 1 4.5080 0.4198 -3.8996 43 1 1.6735 -2.7712 -5.6775 44 1 4.3099 2.4300 -6.2846 45 1 2.8166 1.6991 -7.0827 46 1 1.3295 2.9734 -5.4697 47 1 2.8221 3.7049 -4.6706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431114088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:28 Heat of formation + Delta-G solvation = -18.497494 kcal Electronic energy + Delta-G solvation = -24001.639147 eV Core-core repulsion = 20799.002921 eV Total energy + Delta-G solvation = -3202.636227 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.00936 -37.36901 -36.22921 -35.25886 -33.08598 -32.18761 -32.17446 -27.41085 -27.09119 -26.47679 -25.54802 -24.30302 -21.70206 -21.52759 -20.34625 -19.43721 -18.92705 -17.74627 -16.54904 -16.02425 -15.51946 -14.98335 -14.79674 -14.52880 -14.20264 -13.97151 -13.58370 -13.40735 -12.96271 -12.88084 -12.77811 -12.33306 -12.24521 -12.14131 -12.06263 -11.84289 -11.47385 -11.33829 -11.06731 -10.98458 -10.85352 -10.66802 -10.63237 -10.57290 -10.47761 -10.11160 -9.68566 -9.52922 -9.14616 -8.67742 -8.55053 -8.45325 -7.97353 -6.18975 -4.19481 3.06827 3.31968 3.40632 3.45374 3.70681 4.38963 4.39767 4.85491 4.91109 4.95855 5.00956 5.11335 5.16423 5.17864 5.38337 5.46741 5.52862 5.62761 5.68202 5.72216 5.75679 5.85497 5.93324 5.94741 5.97363 6.00498 6.11112 6.14535 6.18146 6.27308 6.32096 6.35145 6.43705 6.47017 6.50260 6.55874 6.73718 6.82914 6.98146 7.11189 7.27254 7.42219 7.69362 8.40803 8.55837 8.83550 9.15656 9.46438 10.91809 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.005892 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.973278 B = 4751.344669 C = 5344.474795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.113 3.887 4 N -0.633 5.633 5 C 0.138 3.862 6 C -0.112 4.112 7 C -0.143 4.143 8 C -0.136 4.136 9 C 0.702 3.298 10 O -0.600 6.600 11 N -0.720 5.720 12 C 0.167 3.833 13 C -0.015 4.015 14 C -0.490 4.490 15 H 0.077 0.923 16 C 0.087 3.913 17 N -0.889 5.889 18 Si 0.870 3.130 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.252 1.252 22 C -0.187 4.187 23 C -0.180 4.180 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.042 0.958 40 H 0.403 0.597 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.265 0.735 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 8.329 13.744 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C -0.011 4.011 4 N -0.370 5.370 5 C 0.015 3.985 6 C -0.132 4.132 7 C -0.201 4.201 8 C -0.194 4.194 9 C 0.404 3.596 10 O -0.479 6.479 11 N -0.375 5.375 12 C 0.043 3.957 13 C -0.016 4.016 14 C -0.527 4.527 15 H 0.095 0.905 16 C -0.117 4.117 17 N -0.525 5.525 18 Si 0.699 3.301 19 H -0.205 1.205 20 H -0.222 1.222 21 H -0.177 1.177 22 C -0.226 4.226 23 C -0.217 4.217 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.239 0.761 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.516 8.073 13.588 16.004 hybrid contribution 0.404 -0.435 -0.052 0.596 sum 2.920 7.638 13.536 15.814 Atomic orbital electron populations 1.21679 0.95026 1.01950 1.01920 1.22000 0.96346 0.97126 1.03092 1.21549 0.79967 0.97000 1.02576 1.47111 1.05959 1.78595 1.05355 1.21335 0.95996 0.95557 0.85643 1.21537 0.99186 0.96982 0.95487 1.21767 1.00347 1.01614 0.96381 1.21753 1.00364 0.99074 0.98183 1.15926 0.85356 0.77878 0.80453 1.90854 1.12620 1.58591 1.85876 1.45205 1.10124 1.77758 1.04422 1.21163 0.94127 0.99846 0.80549 1.19563 0.96671 0.93394 0.91966 1.20182 0.94023 0.90048 1.48433 0.90498 1.24865 0.97212 0.96247 0.93359 1.69924 1.33800 1.03326 1.45448 0.87112 0.86671 0.78611 0.77689 1.20517 1.22210 1.17668 1.23029 0.97891 1.05851 0.95780 1.22760 0.99087 0.95018 1.04842 0.91933 0.92520 0.93119 0.90750 0.92104 0.90520 0.90772 0.91205 0.89914 0.91517 0.92535 0.92708 0.92851 0.92291 0.92551 0.93888 0.76076 0.93639 0.92686 0.92499 0.91145 0.89191 0.89675 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.15 -1.93 6.17 -26.74 -0.17 -2.10 16 3 C 0.11 1.40 5.11 -4.05 -0.02 1.38 16 4 N -0.63 -9.50 2.38 -179.42 -0.43 -9.92 16 5 C 0.14 1.77 4.97 -4.04 -0.02 1.75 16 6 C -0.11 -1.28 3.13 -90.62 -0.28 -1.56 16 7 C -0.14 -1.31 9.19 37.16 0.34 -0.97 16 8 C -0.14 -1.87 8.03 37.16 0.30 -1.57 16 9 C 0.70 13.53 6.63 -86.92 -0.58 12.96 16 10 O -0.60 -13.39 14.56 5.29 0.08 -13.31 16 11 N -0.72 -14.32 5.31 -65.23 -0.35 -14.67 16 12 C 0.17 3.68 4.72 -4.04 -0.02 3.66 16 13 C -0.01 -0.33 0.88 -155.66 -0.14 -0.46 16 14 C -0.49 -12.76 9.00 -34.44 -0.31 -13.07 16 15 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 16 C 0.09 2.40 5.47 -17.82 -0.10 2.30 16 17 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 18 Si 0.87 21.89 25.11 -169.99 -4.27 17.63 16 19 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.25 -6.07 5.65 56.52 0.32 -5.75 16 22 C -0.19 -3.87 9.46 -26.70 -0.25 -4.12 16 23 C -0.18 -3.49 9.95 -26.70 -0.27 -3.76 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.76 8.02 -51.93 -0.42 0.34 16 30 H 0.07 0.95 6.60 -51.93 -0.34 0.61 16 31 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 32 H 0.08 1.22 7.36 -51.93 -0.38 0.84 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.06 0.92 6.16 -51.93 -0.32 0.60 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.40 7.59 6.01 -40.82 -0.25 7.34 16 41 H 0.05 0.97 8.11 -51.93 -0.42 0.55 16 42 H 0.06 1.34 3.66 -51.93 -0.19 1.15 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 46 H 0.08 1.64 8.14 -51.92 -0.42 1.21 16 47 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -30.19 366.23 -8.53 -38.71 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.72 Total: 8.16 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -1.14 Total: -6.91 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: 0.00 Total: -49.80 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.27 Total: 17.63 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.19 -8.53 -38.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431114088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.215 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds