Wall clock time and date at job start Tue Mar 31 2020 06:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52992 * 109.47202 * 2 1 4 4 N 1.46497 * 109.47383 * 184.85352 * 3 2 1 5 5 C 1.46506 * 119.99957 * 263.45385 * 4 3 2 6 6 C 1.52996 * 109.47200 * 269.99896 * 5 4 3 7 7 C 1.52997 * 109.47184 * 174.99918 * 6 5 4 8 8 C 1.53005 * 109.47191 * 295.00072 * 6 5 4 9 9 C 1.34781 * 120.00168 * 83.45246 * 4 3 2 10 10 O 1.21588 * 119.99931 * 185.09564 * 9 4 3 11 11 N 1.34774 * 119.99889 * 5.09534 * 9 4 3 12 12 C 1.46501 * 119.99789 * 175.08746 * 11 9 4 13 13 C 1.52996 * 109.46964 * 184.40005 * 12 11 9 14 14 C 1.50706 * 115.55178 * 298.75356 * 13 12 11 15 15 H 1.07993 * 119.99989 * 115.07190 * 14 13 12 16 16 C 1.37882 * 119.99759 * 295.06799 * 14 13 12 17 17 N 1.31508 * 119.99906 * 191.63749 * 16 14 13 18 18 Si 1.86807 * 119.99803 * 11.64536 * 16 14 13 19 19 H 1.48492 * 109.47261 * 95.50066 * 18 16 14 20 20 H 1.48499 * 109.46548 * 215.50136 * 18 16 14 21 21 H 1.48495 * 109.46808 * 335.49588 * 18 16 14 22 22 C 1.52997 * 117.49917 * 153.08110 * 13 12 11 23 23 C 1.52995 * 117.49960 * 84.42297 * 13 12 11 24 24 H 1.09004 * 109.47165 * 64.92428 * 1 2 3 25 25 H 1.09005 * 109.46917 * 184.92341 * 1 2 3 26 26 H 1.09004 * 109.47288 * 304.92551 * 1 2 3 27 27 H 1.08995 * 109.47091 * 239.99682 * 2 1 3 28 28 H 1.09005 * 109.47185 * 119.99635 * 2 1 3 29 29 H 1.09003 * 109.47733 * 64.85286 * 3 2 1 30 30 H 1.09004 * 109.47489 * 304.85066 * 3 2 1 31 31 H 1.08995 * 109.47122 * 29.99779 * 5 4 3 32 32 H 1.09004 * 109.46923 * 149.99490 * 5 4 3 33 33 H 1.09003 * 109.47414 * 54.99710 * 6 5 4 34 34 H 1.09010 * 109.47073 * 60.00007 * 7 6 5 35 35 H 1.09004 * 109.46956 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47372 * 299.99843 * 7 6 5 37 37 H 1.09003 * 109.46647 * 300.00109 * 8 6 5 38 38 H 1.09001 * 109.47324 * 59.99815 * 8 6 5 39 39 H 1.08999 * 109.46946 * 180.02562 * 8 6 5 40 40 H 0.96998 * 120.00254 * 354.81780 * 11 9 4 41 41 H 1.08993 * 109.47585 * 304.40377 * 12 11 9 42 42 H 1.09007 * 109.46837 * 64.40361 * 12 11 9 43 43 H 0.97008 * 119.99903 * 180.02562 * 17 16 14 44 44 H 1.09003 * 117.49934 * 0.02562 * 22 13 12 45 45 H 1.09003 * 117.49781 * 145.02132 * 22 13 12 46 46 H 1.09011 * 117.50198 * 214.98213 * 23 13 12 47 47 H 1.09002 * 117.49678 * 359.97255 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5003 1.4441 -0.1169 5 6 4.3312 1.5540 1.0848 6 6 4.6089 3.0294 1.3796 7 6 5.3701 3.1508 2.7012 8 6 5.4506 3.6257 0.2496 9 6 4.0794 1.3446 -1.3298 10 8 5.2884 1.2526 -1.4205 11 7 3.3184 1.3469 -2.4421 12 6 3.9519 1.3474 -3.7631 13 6 2.8758 1.4608 -4.8447 14 6 1.8717 0.3377 -4.8830 15 1 0.8327 0.5345 -4.6639 16 6 2.2796 -0.9412 -5.1980 17 7 1.3865 -1.8713 -5.4563 18 14 4.1008 -1.3526 -5.2575 19 1 4.5204 -1.9314 -3.9560 20 1 4.3506 -2.3373 -6.3407 21 1 4.8791 -0.1162 -5.5234 22 6 3.2783 2.0944 -6.1779 23 6 2.3812 2.8632 -5.2047 24 1 -0.3634 0.4356 -0.9308 25 1 -0.3633 -1.0239 0.0882 26 1 -0.3634 0.5884 0.8426 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7494 1.9307 0.9302 30 1 1.6074 1.9808 -0.8434 31 1 3.8084 1.1067 1.9301 32 1 5.2743 1.0319 0.9233 33 1 3.6648 3.5692 1.4532 34 1 6.3143 2.6110 2.6277 35 1 5.5683 4.2020 2.9111 36 1 4.7705 2.7261 3.5063 37 1 6.3947 3.0858 0.1761 38 1 4.9083 3.5392 -0.6920 39 1 5.6488 4.6767 0.4599 40 1 2.3512 1.3444 -2.3681 41 1 4.6339 2.1942 -3.8387 42 1 4.5080 0.4198 -3.8996 43 1 1.6735 -2.7712 -5.6775 44 1 4.3099 2.4300 -6.2846 45 1 2.8166 1.6991 -7.0827 46 1 1.3295 2.9734 -5.4697 47 1 2.8221 3.7049 -4.6706 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431114088.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:28 Heat of formation + Delta-G solvation = -36.305295 kcal Electronic energy + Delta-G solvation = -24002.411352 eV Core-core repulsion = 20799.002921 eV Total energy + Delta-G solvation = -3203.408431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.40771 -38.98263 -37.57521 -36.34988 -34.62863 -34.27944 -33.28639 -28.93618 -28.01877 -27.74800 -27.21022 -25.70469 -23.19875 -22.74065 -21.45981 -21.20032 -20.28082 -19.22330 -18.24553 -17.50538 -17.19223 -16.56846 -15.99950 -15.67862 -15.48812 -15.36498 -15.10325 -14.92685 -14.56174 -14.22615 -14.04465 -13.85277 -13.75170 -13.22176 -13.10212 -13.05399 -12.78315 -12.63193 -12.51230 -12.36165 -12.13998 -11.97452 -11.95622 -11.79406 -11.68274 -11.58211 -11.53936 -11.14496 -10.90919 -10.71176 -10.40270 -9.95602 -9.37176 -8.34821 -6.34520 1.26820 1.34532 1.41025 1.76802 2.21245 2.29745 2.90584 3.08367 3.38239 3.91752 3.96649 3.98661 4.03462 4.15091 4.20570 4.31272 4.38273 4.47981 4.51468 4.55449 4.58455 4.68343 4.72851 4.79028 4.82140 4.87214 4.90999 4.95853 5.03202 5.06362 5.09616 5.16325 5.23236 5.25393 5.28344 5.41244 5.44389 5.47986 5.51390 5.63870 5.69046 5.75769 6.04679 6.28796 6.70577 7.09554 7.32700 7.66207 8.79530 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.005892 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.973278 B = 4751.344669 C = 5344.474795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.112 3.888 4 N -0.625 5.625 5 C 0.133 3.867 6 C -0.105 4.105 7 C -0.138 4.138 8 C -0.132 4.132 9 C 0.698 3.302 10 O -0.636 6.636 11 N -0.722 5.722 12 C 0.176 3.824 13 C -0.042 4.042 14 C -0.471 4.471 15 H 0.049 0.951 16 C 0.044 3.956 17 N -0.932 5.932 18 Si 0.915 3.085 19 H -0.297 1.297 20 H -0.296 1.296 21 H -0.234 1.234 22 C -0.184 4.184 23 C -0.152 4.152 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.026 0.974 39 H 0.059 0.941 40 H 0.406 0.594 41 H 0.054 0.946 42 H 0.028 0.972 43 H 0.264 0.736 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.596 10.537 15.754 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C -0.011 4.011 4 N -0.361 5.361 5 C 0.011 3.989 6 C -0.124 4.124 7 C -0.196 4.196 8 C -0.190 4.190 9 C 0.399 3.601 10 O -0.518 6.518 11 N -0.377 5.377 12 C 0.051 3.949 13 C -0.043 4.043 14 C -0.509 4.509 15 H 0.067 0.933 16 C -0.155 4.155 17 N -0.571 5.571 18 Si 0.744 3.256 19 H -0.225 1.225 20 H -0.224 1.224 21 H -0.157 1.157 22 C -0.222 4.222 23 C -0.189 4.189 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.243 0.757 41 H 0.072 0.928 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.429 10.311 15.623 18.875 hybrid contribution 0.371 -1.077 -0.614 1.294 sum 2.800 9.234 15.009 17.843 Atomic orbital electron populations 1.21646 0.93763 1.02219 1.02504 1.21938 0.97399 0.97315 1.01450 1.21749 0.78120 0.96702 1.04494 1.47201 1.07316 1.77095 1.04473 1.21573 0.95088 0.96805 0.85477 1.21498 0.99685 0.95579 0.95680 1.21725 0.99997 1.02406 0.95431 1.21699 0.99346 1.00074 0.97846 1.16123 0.84887 0.77638 0.81444 1.90823 1.14204 1.60179 1.86591 1.45127 1.10254 1.78172 1.04194 1.20924 0.93891 0.98725 0.81382 1.19439 0.97031 0.94172 0.93643 1.20300 0.93628 0.90961 1.46007 0.93258 1.25389 0.99612 0.96576 0.93948 1.70014 1.35228 1.03763 1.48109 0.86392 0.83912 0.78860 0.76446 1.22483 1.22383 1.15702 1.23067 0.99397 1.05272 0.94473 1.22800 0.99256 0.93766 1.03092 0.93374 0.92949 0.89970 0.95243 0.90879 0.86439 0.91178 0.87874 0.92458 0.90030 0.93262 0.91712 0.90834 0.94422 0.95485 0.92230 0.75683 0.92773 0.95422 0.92641 0.89077 0.89966 0.89467 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 9.91 71.98 0.71 -2.42 16 2 C -0.14 -3.58 6.17 30.59 0.19 -3.39 16 3 C 0.11 2.53 5.11 86.38 0.44 2.97 16 4 N -0.63 -17.93 2.38 -839.83 -2.00 -19.92 16 5 C 0.13 3.14 4.97 86.38 0.43 3.57 16 6 C -0.10 -2.11 3.13 -10.79 -0.03 -2.14 16 7 C -0.14 -2.08 9.19 71.98 0.66 -1.41 16 8 C -0.13 -3.47 8.03 71.98 0.58 -2.89 16 9 C 0.70 26.88 6.63 179.05 1.19 28.07 16 10 O -0.64 -28.84 14.56 -3.99 -0.06 -28.89 16 11 N -0.72 -28.73 5.31 -478.54 -2.54 -31.28 16 12 C 0.18 7.65 4.72 86.38 0.41 8.06 16 13 C -0.04 -1.82 0.88 -52.93 -0.05 -1.87 16 14 C -0.47 -24.89 9.00 25.60 0.23 -24.65 16 15 H 0.05 2.83 8.06 -2.91 -0.02 2.81 16 16 C 0.04 2.49 5.47 84.66 0.46 2.95 16 17 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 18 Si 0.92 46.20 25.11 68.60 1.72 47.93 16 19 H -0.30 -15.77 7.11 99.48 0.71 -15.06 16 20 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 21 H -0.23 -10.97 5.65 99.48 0.56 -10.41 16 22 C -0.18 -7.21 9.46 30.62 0.29 -6.92 16 23 C -0.15 -5.53 9.95 30.61 0.30 -5.23 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.12 1.77 8.02 -2.39 -0.02 1.75 16 30 H 0.07 1.67 6.60 -2.38 -0.02 1.66 16 31 H 0.10 1.76 8.07 -2.39 -0.02 1.74 16 32 H 0.06 1.67 7.36 -2.38 -0.02 1.65 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.04 1.12 8.09 -2.39 -0.02 1.10 16 38 H 0.03 0.85 6.16 -2.39 -0.01 0.84 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.41 15.36 6.01 -92.71 -0.56 14.80 16 41 H 0.05 2.25 8.11 -2.39 -0.02 2.23 16 42 H 0.03 1.36 3.66 -2.38 -0.01 1.35 16 43 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 44 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 46 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 47 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -67.91 366.23 3.46 -64.45 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.22 Total: 28.89 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 5.82 Total: -5.32 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -4.24 Total: -107.05 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.06 Total: -28.89 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.72 Total: 47.93 kcal Total: -67.91 3.46 -64.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431114088.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.146 kcal (2) G-P(sol) polarization free energy of solvation -67.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds