Wall clock time and date at job start Tue Mar 31 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46734 * 2 1 4 4 H 1.08993 * 109.47158 * 294.88213 * 3 2 1 5 5 C 1.50711 * 109.46721 * 174.88822 * 3 2 1 6 6 O 1.21276 * 119.99838 * 245.23369 * 5 3 2 7 7 N 1.34773 * 119.99960 * 65.22817 * 5 3 2 8 8 C 1.46497 * 119.99865 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.47258 * 185.18598 * 8 7 5 10 10 C 1.50697 * 115.55064 * 54.97058 * 9 8 7 11 11 H 1.07999 * 119.99936 * 272.52604 * 10 9 8 12 12 C 1.37870 * 120.00194 * 92.52583 * 10 9 8 13 13 N 1.31517 * 119.99711 * 4.28059 * 12 10 9 14 14 Si 1.86804 * 120.00346 * 184.28598 * 12 10 9 15 15 H 1.48499 * 109.46928 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47194 * 119.99657 * 14 12 10 17 17 H 1.48498 * 109.46985 * 239.99631 * 14 12 10 18 18 C 1.53004 * 117.49859 * 269.30627 * 9 8 7 19 19 C 1.52999 * 117.50135 * 200.64271 * 9 8 7 20 20 N 1.46897 * 109.47531 * 54.89139 * 3 2 1 21 21 C 1.46900 * 111.00245 * 56.13088 * 20 3 2 22 22 C 1.52997 * 109.47483 * 197.51059 * 21 20 3 23 23 C 1.46894 * 111.00109 * 180.08587 * 20 3 2 24 24 C 1.52998 * 109.46954 * 76.24311 * 23 20 3 25 25 H 1.08994 * 109.47016 * 54.94811 * 1 2 3 26 26 H 1.09001 * 109.46659 * 174.94754 * 1 2 3 27 27 H 1.09001 * 109.46740 * 294.94553 * 1 2 3 28 28 H 1.08994 * 109.46891 * 239.99833 * 2 1 3 29 29 H 1.08996 * 109.47110 * 119.99894 * 2 1 3 30 30 H 0.97002 * 119.99811 * 359.97438 * 7 5 3 31 31 H 1.08999 * 109.47516 * 305.18267 * 8 7 5 32 32 H 1.09000 * 109.47337 * 65.18647 * 8 7 5 33 33 H 0.97004 * 119.99555 * 185.00499 * 13 12 10 34 34 H 1.09009 * 117.49681 * 359.97438 * 18 9 8 35 35 H 1.08998 * 117.50283 * 145.01749 * 18 9 8 36 36 H 1.08991 * 117.50097 * 214.97546 * 19 9 8 37 37 H 1.09003 * 117.49635 * 359.97438 * 19 9 8 38 38 H 1.09005 * 109.47092 * 317.51023 * 21 20 3 39 39 H 1.09000 * 109.47149 * 77.50621 * 21 20 3 40 40 H 1.08998 * 109.47148 * 300.00407 * 22 21 20 41 41 H 1.09009 * 109.47211 * 59.99847 * 22 21 20 42 42 H 1.09001 * 109.47367 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47112 * 196.23714 * 23 20 3 44 44 H 1.08995 * 109.47448 * 316.23843 * 23 20 3 45 45 H 1.09005 * 109.47200 * 304.63820 * 24 23 20 46 46 H 1.09000 * 109.47829 * 64.64176 * 24 23 20 47 47 H 1.09000 * 109.47042 * 184.64680 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7534 1.9292 -0.9322 5 6 3.5417 1.4444 0.1266 6 8 4.0664 1.9133 1.1144 7 7 4.3016 0.9250 -0.8578 8 6 5.7614 0.9273 -0.7350 9 6 6.3832 0.4041 -2.0314 10 6 5.9669 1.1234 -3.2885 11 1 5.0794 0.8127 -3.8197 12 6 6.7190 2.1782 -3.7604 13 7 7.8443 2.5030 -3.1622 14 14 6.1395 3.1461 -5.2493 15 1 4.8537 2.5843 -5.7352 16 1 5.9468 4.5691 -4.8704 17 1 7.1578 3.0543 -6.3263 18 6 6.6460 -1.0998 -2.1322 19 6 7.8163 -0.1275 -1.9634 20 7 1.4522 2.1698 1.1330 21 6 1.7415 1.4894 2.4024 22 6 0.7835 1.9959 3.4824 23 6 1.9188 3.5623 1.1638 24 6 1.1879 4.3689 0.0886 25 1 -0.3633 0.5902 -0.8412 26 1 -0.3633 -1.0237 -0.0905 27 1 -0.3633 0.4334 0.9318 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8819 0.5495 -1.6477 31 1 6.1089 1.9437 -0.5498 32 1 6.0573 0.2854 0.0948 33 1 8.3363 3.2885 -3.4482 34 1 6.3763 -1.7164 -1.2747 35 1 6.5182 -1.5688 -3.1078 36 1 8.4578 0.0426 -2.8279 37 1 8.3163 -0.1042 -0.9951 38 1 1.6115 0.4145 2.2764 39 1 2.7688 1.6986 2.7008 40 1 0.9134 3.0707 3.6084 41 1 -0.2439 1.7867 3.1840 42 1 0.9979 1.4907 4.4242 43 1 1.7129 3.9929 2.1437 44 1 2.9915 3.5904 0.9727 45 1 1.3263 3.8908 -0.8812 46 1 0.1247 4.4100 0.3250 47 1 1.5922 5.3806 0.0558 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431147482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:21 Heat of formation + Delta-G solvation = -17.474886 kcal Electronic energy + Delta-G solvation = -23853.781602 eV Core-core repulsion = 20651.189719 eV Total energy + Delta-G solvation = -3202.591883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.17371 -37.40519 -36.30911 -33.98184 -32.88800 -31.96131 -31.68010 -29.12542 -27.14273 -25.68239 -24.69912 -22.93226 -22.03378 -21.19593 -20.69207 -19.62969 -18.88756 -16.72673 -16.37621 -15.85183 -15.62495 -14.83477 -14.72702 -14.60574 -14.33338 -13.89232 -13.59747 -13.25359 -13.04585 -12.73697 -12.64618 -12.14894 -12.08049 -11.83891 -11.79920 -11.58482 -11.51923 -11.29296 -11.12968 -11.05244 -10.94792 -10.81832 -10.54958 -10.34612 -10.32829 -10.22882 -9.81818 -9.49837 -9.12975 -8.47272 -8.35925 -8.11919 -7.80698 -6.11527 -4.21201 3.11884 3.22132 3.31478 3.32877 3.87513 4.00922 4.32446 4.89353 5.05775 5.09648 5.15267 5.19203 5.37280 5.40403 5.43869 5.55231 5.59620 5.63865 5.69037 5.78496 5.85227 5.94826 6.00730 6.01900 6.08675 6.17645 6.18630 6.23072 6.30381 6.32240 6.44942 6.46113 6.47635 6.50290 6.69790 6.82361 7.11572 7.15675 7.24298 7.26189 7.35411 7.58372 7.76350 8.25626 8.29974 8.80440 8.82992 9.46235 10.95588 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.005041 C = 0.004612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.624156 B = 5553.606190 C = 6069.802079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.063 3.937 4 H 0.105 0.895 5 C 0.478 3.522 6 O -0.557 6.557 7 N -0.696 5.696 8 C 0.163 3.837 9 C 0.018 3.982 10 C -0.496 4.496 11 H 0.060 0.940 12 C 0.074 3.926 13 N -0.875 5.875 14 Si 0.888 3.112 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.214 4.214 19 C -0.136 4.136 20 N -0.505 5.505 21 C 0.031 3.969 22 C -0.142 4.142 23 C 0.032 3.968 24 C -0.145 4.145 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.401 0.599 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.121 -2.541 6.972 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.050 4.050 4 H 0.123 0.877 5 C 0.262 3.738 6 O -0.438 6.438 7 N -0.344 5.344 8 C 0.039 3.961 9 C 0.017 3.983 10 C -0.534 4.534 11 H 0.078 0.922 12 C -0.130 4.130 13 N -0.511 5.511 14 Si 0.715 3.285 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.251 4.251 19 C -0.174 4.174 20 N -0.228 5.228 21 C -0.096 4.096 22 C -0.200 4.200 23 C -0.095 4.095 24 C -0.202 4.202 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.235 0.765 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.051 -2.102 7.561 15.228 hybrid contribution 0.639 0.519 -1.142 1.408 sum -12.412 -1.583 6.419 14.063 Atomic orbital electron populations 1.21612 0.94382 1.00622 1.02882 1.21581 0.97389 0.93650 1.02580 1.21954 0.89179 0.96695 0.97166 0.87692 1.21770 0.90392 0.78194 0.83445 1.90579 1.74999 1.47183 1.30996 1.46087 1.08145 1.59237 1.20955 1.20954 0.77995 1.00638 0.96469 1.19079 0.95878 0.89854 0.93483 1.20339 1.10124 1.15776 1.07114 0.92227 1.24977 0.94084 0.97337 0.96619 1.70022 1.13883 1.25307 1.41879 0.86616 0.78862 0.80098 0.82915 1.19647 1.20947 1.21001 1.23094 1.07436 0.94519 1.00039 1.22427 0.91953 1.02404 1.00599 1.62525 1.55944 1.02062 1.02278 1.22329 0.99565 0.98482 0.89265 1.21760 0.99783 1.00959 0.97515 1.22332 0.99832 0.87952 0.99405 1.21762 1.00477 0.99070 0.98928 0.92693 0.93423 0.91616 0.90976 0.91524 0.76484 0.91749 0.94676 0.92954 0.91900 0.90406 0.89004 0.92042 0.91088 0.91719 0.93011 0.92538 0.92859 0.91271 0.91662 0.92875 0.92587 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.56 37.16 0.36 -1.04 16 2 C -0.11 -1.34 4.90 -26.73 -0.13 -1.47 16 3 C 0.06 0.88 2.22 -68.86 -0.15 0.72 16 4 H 0.11 1.44 6.83 -51.93 -0.35 1.08 16 5 C 0.48 8.55 6.29 -10.98 -0.07 8.48 16 6 O -0.56 -11.57 11.93 5.56 0.07 -11.51 16 7 N -0.70 -13.12 5.32 -60.29 -0.32 -13.44 16 8 C 0.16 3.60 5.57 -4.04 -0.02 3.58 16 9 C 0.02 0.41 1.71 -155.66 -0.27 0.15 16 10 C -0.50 -12.55 8.28 -34.44 -0.29 -12.83 16 11 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 12 C 0.07 1.94 5.41 -17.82 -0.10 1.84 16 13 N -0.87 -24.09 12.01 55.43 0.67 -23.42 16 14 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.21 -4.44 9.93 -26.69 -0.26 -4.71 16 19 C -0.14 -3.13 8.90 -26.69 -0.24 -3.36 16 20 N -0.50 -6.82 3.59 -228.04 -0.82 -7.64 16 21 C 0.03 0.41 4.45 -3.83 -0.02 0.40 16 22 C -0.14 -1.57 10.00 37.16 0.37 -1.19 16 23 C 0.03 0.46 5.18 -3.83 -0.02 0.44 16 24 C -0.14 -1.82 10.09 37.16 0.37 -1.45 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.69 7.25 -51.93 -0.38 0.32 16 28 H 0.07 0.81 8.06 -51.93 -0.42 0.39 16 29 H 0.07 0.82 6.28 -51.93 -0.33 0.49 16 30 H 0.40 7.02 8.06 -40.82 -0.33 6.69 16 31 H 0.06 1.63 8.13 -51.93 -0.42 1.21 16 32 H 0.03 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 34 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.09 2.30 7.72 -51.93 -0.40 1.90 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.07 0.91 5.45 -51.93 -0.28 0.62 16 39 H 0.06 1.06 5.99 -51.93 -0.31 0.74 16 40 H 0.05 0.58 6.63 -51.93 -0.34 0.23 16 41 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.93 6.34 -51.93 -0.33 0.60 16 44 H 0.07 1.16 5.41 -51.93 -0.28 0.88 16 45 H 0.05 0.69 6.82 -51.93 -0.35 0.34 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 362.68 15.07 5.47 5.47 Total: -1.00 -27.76 362.68 -8.73 -36.48 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -8.30 Total: 9.15 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -0.46 Total: -10.46 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.47 Total: -44.50 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.51 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.76 -8.73 -36.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431147482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.008 kcal (2) G-P(sol) polarization free energy of solvation -27.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds