Wall clock time and date at job start Tue Mar 31 2020 05:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46904 * 2 1 4 4 H 1.09002 * 109.47399 * 305.00565 * 3 2 1 5 5 C 1.53002 * 109.46872 * 65.00234 * 3 2 1 6 6 C 1.53001 * 109.47324 * 185.00526 * 3 2 1 7 7 N 1.46491 * 109.47288 * 175.00328 * 6 3 2 8 8 C 1.46510 * 119.99903 * 269.99700 * 7 6 3 9 9 C 1.52992 * 109.47119 * 274.17127 * 8 7 6 10 10 C 1.34774 * 120.00599 * 89.99896 * 7 6 3 11 11 O 1.21588 * 119.99616 * 5.19647 * 10 7 6 12 12 N 1.34775 * 120.00599 * 185.19647 * 10 7 6 13 13 C 1.46499 * 120.00106 * 185.03724 * 12 10 7 14 14 C 1.53000 * 109.46952 * 184.98927 * 13 12 10 15 15 C 1.50700 * 115.55075 * 54.06635 * 14 13 12 16 16 H 1.07999 * 120.00058 * 215.58877 * 15 14 13 17 17 C 1.37879 * 120.00006 * 35.31746 * 15 14 13 18 18 N 1.31519 * 119.99873 * 355.88872 * 17 15 14 19 19 Si 1.86804 * 120.00138 * 175.89878 * 17 15 14 20 20 H 1.48505 * 109.47118 * 59.99590 * 19 17 15 21 21 H 1.48502 * 109.47049 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46955 * 299.99550 * 19 17 15 23 23 C 1.52998 * 117.49924 * 199.73258 * 14 13 12 24 24 C 1.53002 * 117.49986 * 268.39464 * 14 13 12 25 25 H 1.09002 * 109.46763 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46785 * 299.99101 * 1 2 3 27 27 H 1.08988 * 109.47881 * 59.99877 * 1 2 3 28 28 H 1.09005 * 109.46785 * 240.00899 * 2 1 3 29 29 H 1.08991 * 109.47499 * 120.00466 * 2 1 3 30 30 H 1.08999 * 109.46669 * 179.97438 * 5 3 2 31 31 H 1.08990 * 109.47215 * 300.00259 * 5 3 2 32 32 H 1.08999 * 109.46930 * 60.00514 * 5 3 2 33 33 H 1.09002 * 109.47012 * 54.99742 * 6 3 2 34 34 H 1.08997 * 109.46730 * 295.00523 * 6 3 2 35 35 H 1.08998 * 109.46730 * 34.17146 * 8 7 6 36 36 H 1.09000 * 109.46756 * 154.16694 * 8 7 6 37 37 H 1.08998 * 109.47336 * 299.99649 * 9 8 7 38 38 H 1.09008 * 109.47302 * 60.00148 * 9 8 7 39 39 H 1.09001 * 109.46805 * 179.97438 * 9 8 7 40 40 H 0.96997 * 119.99717 * 5.03269 * 12 10 7 41 41 H 1.08992 * 109.47383 * 64.98707 * 13 12 10 42 42 H 1.09004 * 109.47078 * 304.98529 * 13 12 10 43 43 H 0.96996 * 119.99534 * 184.99845 * 18 17 15 44 44 H 1.08997 * 117.50378 * 215.00096 * 23 14 13 45 45 H 1.09005 * 117.49680 * 0.03067 * 23 14 13 46 46 H 1.08993 * 117.49679 * 359.97438 * 24 14 13 47 47 H 1.09000 * 117.49428 * 144.97189 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4445 -0.1259 7 7 4.0431 2.8239 -0.2458 8 6 4.1783 3.4399 -1.5682 9 6 5.5460 3.0887 -2.1571 10 6 4.3589 3.5263 0.8602 11 8 4.3376 2.9869 1.9496 12 7 4.6983 4.8267 0.7586 13 6 5.1479 5.5611 1.9439 14 6 5.3491 7.0347 1.5848 15 6 4.1647 7.7165 0.9495 16 1 4.3178 8.4635 0.1848 17 6 2.8854 7.3825 1.3407 18 7 2.6953 6.4130 2.2087 19 14 1.4224 8.3069 0.6374 20 1 1.3993 8.1476 -0.8389 21 1 0.1678 7.7598 1.2136 22 1 1.5370 9.7477 0.9782 23 6 6.2342 7.8727 2.5096 24 6 6.7430 7.4657 1.1244 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8898 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8898 30 1 1.9989 3.1540 1.3076 31 1 0.5490 2.1251 1.3970 32 1 2.0699 1.5875 2.1491 33 1 3.8569 0.8802 -1.0115 34 1 4.0029 0.9836 0.7594 35 1 3.3930 3.0660 -2.2252 36 1 4.0896 4.5224 -1.4755 37 1 6.3313 3.4626 -1.5002 38 1 5.6346 2.0062 -2.2498 39 1 5.6463 3.5467 -3.1411 40 1 4.6450 5.2763 -0.0992 41 1 6.0899 5.1410 2.2959 42 1 4.3968 5.4779 2.7294 43 1 1.7943 6.1293 2.4292 44 1 5.9600 8.9170 2.6584 45 1 6.6736 7.3740 3.3735 46 1 7.5168 6.6995 1.0777 47 1 6.8034 8.2420 0.3616 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431199842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:08 Heat of formation + Delta-G solvation = -16.653673 kcal Electronic energy + Delta-G solvation = -24118.344787 eV Core-core repulsion = 20915.788515 eV Total energy + Delta-G solvation = -3202.556273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.59041 -37.09122 -36.19941 -34.87669 -32.82167 -32.10251 -30.66244 -28.98649 -26.81259 -25.66837 -24.88915 -23.33289 -22.58736 -21.20845 -19.79751 -19.21124 -18.63157 -17.54259 -16.19369 -15.74783 -15.16548 -14.82729 -14.73829 -14.00928 -13.83706 -13.67026 -13.55610 -13.20682 -13.05089 -12.67614 -12.48834 -12.21496 -11.87267 -11.74861 -11.59354 -11.49798 -11.29992 -11.05985 -11.04562 -10.89661 -10.72349 -10.62683 -10.49905 -10.34035 -10.29919 -10.19040 -9.64029 -9.11103 -8.92784 -8.79233 -8.24638 -8.14368 -7.54191 -5.92474 -4.14206 3.23413 3.31757 3.32471 3.42203 4.18158 4.32313 4.74606 5.00805 5.02256 5.09105 5.17911 5.22599 5.41551 5.46000 5.52669 5.56277 5.69830 5.76986 5.83164 5.88996 5.96336 6.03042 6.04355 6.08690 6.18421 6.24318 6.30024 6.35496 6.36992 6.45490 6.60234 6.64925 6.67259 6.79255 6.91927 6.98337 7.04700 7.20864 7.29530 7.62816 7.75365 7.90208 8.07481 8.36918 8.82069 9.06569 9.48698 9.64892 10.94742 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015121 B = 0.006082 C = 0.005174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.342301 B = 4602.280440 C = 5410.775630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.107 4.107 4 H 0.064 0.936 5 C -0.137 4.137 6 C 0.142 3.858 7 N -0.637 5.637 8 C 0.109 3.891 9 C -0.168 4.168 10 C 0.705 3.295 11 O -0.600 6.600 12 N -0.701 5.701 13 C 0.183 3.817 14 C 0.039 3.961 15 C -0.499 4.499 16 H 0.058 0.942 17 C 0.076 3.924 18 N -0.859 5.859 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.199 4.199 24 C -0.213 4.213 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.392 0.608 41 H 0.011 0.989 42 H 0.114 0.886 43 H 0.262 0.738 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.202 -9.607 -7.957 12.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.127 4.127 4 H 0.082 0.918 5 C -0.194 4.194 6 C 0.018 3.982 7 N -0.376 5.376 8 C -0.016 4.016 9 C -0.226 4.226 10 C 0.407 3.593 11 O -0.480 6.480 12 N -0.353 5.353 13 C 0.059 3.941 14 C 0.038 3.962 15 C -0.536 4.536 16 H 0.076 0.924 17 C -0.129 4.129 18 N -0.494 5.494 19 Si 0.718 3.282 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.238 4.238 24 C -0.250 4.250 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.227 0.773 41 H 0.029 0.971 42 H 0.132 0.868 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.344 -10.027 -6.967 12.214 hybrid contribution -0.825 0.873 -0.900 1.501 sum -1.169 -9.154 -7.867 12.126 Atomic orbital electron populations 1.21795 0.96088 1.00985 1.02011 1.21498 0.95815 0.96487 1.01564 1.21597 0.96162 0.95650 0.99329 0.91770 1.21782 0.99367 1.02139 0.96145 1.21208 0.92985 0.82139 1.01858 1.47093 1.71425 1.14060 1.04984 1.21373 0.96890 0.98801 0.84498 1.22191 0.98153 1.01517 1.00789 1.15829 0.77977 0.82086 0.83431 1.90821 1.61094 1.70461 1.25616 1.44925 1.69417 1.07735 1.13222 1.20880 0.96717 0.87980 0.88504 1.19242 0.88237 0.91744 0.96976 1.20413 0.89103 1.22487 1.21646 0.92373 1.24984 0.98694 0.94831 0.94356 1.69874 1.21565 1.26347 1.31602 0.86693 0.82019 0.80387 0.79082 1.20366 1.21290 1.20236 1.22935 1.07985 1.00856 0.92040 1.22939 1.00713 1.03448 0.97928 0.93237 0.92347 0.93041 0.92459 0.91946 0.91449 0.94036 0.92610 0.91807 0.90136 0.91280 0.90319 0.92257 0.92831 0.92002 0.77288 0.97107 0.86849 0.92709 0.90309 0.91522 0.91457 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.67 37.16 0.36 -1.26 16 2 C -0.12 -1.31 5.40 -26.73 -0.14 -1.46 16 3 C -0.11 -1.51 2.59 -90.62 -0.24 -1.74 16 4 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.14 -2.37 7.79 37.16 0.29 -2.08 16 6 C 0.14 2.08 5.02 -4.05 -0.02 2.06 16 7 N -0.64 -10.70 2.36 -179.43 -0.42 -11.12 16 8 C 0.11 1.50 6.14 -4.04 -0.02 1.48 16 9 C -0.17 -2.00 10.24 37.15 0.38 -1.62 16 10 C 0.71 14.99 6.68 -86.92 -0.58 14.41 16 11 O -0.60 -14.73 14.54 5.29 0.08 -14.66 16 12 N -0.70 -15.27 4.90 -65.23 -0.32 -15.59 16 13 C 0.18 4.40 4.62 -4.04 -0.02 4.38 16 14 C 0.04 0.92 2.04 -155.66 -0.32 0.60 16 15 C -0.50 -12.66 8.43 -34.44 -0.29 -12.95 16 16 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 17 C 0.08 1.96 5.31 -17.82 -0.09 1.86 16 18 N -0.86 -22.94 10.11 55.43 0.56 -22.38 16 19 Si 0.89 20.26 29.54 -169.99 -5.02 15.23 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 C -0.20 -4.40 9.96 -26.69 -0.27 -4.66 16 24 C -0.21 -4.45 9.92 -26.69 -0.26 -4.71 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.67 6.57 -51.93 -0.34 0.33 16 27 H 0.05 0.53 8.14 -51.94 -0.42 0.11 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.44 6.16 -51.93 -0.32 1.12 16 31 H 0.04 0.65 6.56 -51.93 -0.34 0.31 16 32 H 0.05 1.02 8.09 -51.93 -0.42 0.60 16 33 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 34 H 0.08 1.32 7.36 -51.93 -0.38 0.94 16 35 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.08 1.19 5.93 -51.93 -0.31 0.88 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.39 8.17 5.68 -40.82 -0.23 7.94 16 41 H 0.01 0.26 8.09 -51.93 -0.42 -0.16 16 42 H 0.11 3.13 5.90 -51.93 -0.31 2.82 16 43 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 44 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 45 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -28.02 366.92 -9.35 -37.37 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -8.53 Total: 11.31 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.23 Total: -5.70 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: -0.18 Total: -49.09 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.08 Total: -14.66 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.02 -9.35 -37.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431199842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.720 kcal (2) G-P(sol) polarization free energy of solvation -28.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds